RNA–Protein interactions for RNA: ENST00000259154.8

KCTD3-201, Transcript of potassium channel tetramerization domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KCTD3, Length 3,931 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCTD3-201ENST00000259154 NISCHQ9Y2I1 1504 aa28.93■■■□□ 2.22
KCTD3-201ENST00000259154 DCAF8L2P0C7V8 631 aa25.35■■□□□ 1.65
KCTD3-201ENST00000259154 SHROOM4Q9ULL8 1493 aa25.27■■□□□ 1.64
KCTD3-201ENST00000259154 CCDC180Q9P1Z9 1646 aa25.2■■□□□ 1.62
KCTD3-201ENST00000259154 SUPT5HO00267 1087 aaKnown RBP25.15■■□□□ 1.62
KCTD3-201ENST00000259154 PCGF6Q9BYE7 350 aa24.55■■□□□ 1.52
KCTD3-201ENST00000259154 ZCCHC6Q5VYS8 1495 aaKnown RBP24.48■■□□□ 1.51
KCTD3-201ENST00000259154 EHMT2Q96KQ7 1210 aa24.42■■□□□ 1.5
KCTD3-201ENST00000259154 PPARGC1BQ86YN6 1023 aaKnown RBP24.07■■□□□ 1.44
KCTD3-201ENST00000259154 DCAF1Q9Y4B6 1507 aa24.07■■□□□ 1.44
KCTD3-201ENST00000259154 HRCP23327 699 aa23.82■■□□□ 1.4
KCTD3-201ENST00000259154 MYO15BQ96JP2 1530 aa23.75■■□□□ 1.39
KCTD3-201ENST00000259154 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
KCTD3-201ENST00000259154 FAM9AQ8IZU1 332 aaPredicted RBP23.7■■□□□ 1.38
KCTD3-201ENST00000259154 TTBK1Q5TCY1 1321 aaPredicted RBP23.65■■□□□ 1.38
KCTD3-201ENST00000259154 LOC105371045A0A1W2PR82 267 aa23.44■■□□□ 1.34
KCTD3-201ENST00000259154 PELP1Q8IZL8 1130 aaKnown RBP23.31■■□□□ 1.32
KCTD3-201ENST00000259154 YTHDC1Q96MU7 727 aaKnown RBP23.23■■□□□ 1.31
KCTD3-201ENST00000259154 NACADO15069 1562 aa23.18■■□□□ 1.3
KCTD3-201ENST00000259154 CCER1Q8TC90 406 aaPredicted RBP23.08■■□□□ 1.28
KCTD3-201ENST00000259154 ABCC9O60706 1549 aa23.02■■□□□ 1.28
KCTD3-201ENST00000259154 SCRIBQ14160 1630 aa22.98■■□□□ 1.27
KCTD3-201ENST00000259154 CENPBP07199 599 aaPredicted RBP22.97■■□□□ 1.27
KCTD3-201ENST00000259154 TRIM26Q12899 539 aaPredicted RBP22.96■■□□□ 1.27
KCTD3-201ENST00000259154 ZEB1P37275 1124 aaPredicted RBP22.89■■□□□ 1.26
KCTD3-201ENST00000259154 UNC13AQ9UPW8 1703 aa22.86■■□□□ 1.25
KCTD3-201ENST00000259154 TRIM41Q8WV44 630 aa22.81■■□□□ 1.24
KCTD3-201ENST00000259154 RB1CC1Q8TDY2 1594 aa22.8■■□□□ 1.24
KCTD3-201ENST00000259154 RSF1Q96T23 1441 aaPredicted RBP22.73■■□□□ 1.23
KCTD3-201ENST00000259154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.72■■□□□ 1.23
KCTD3-201ENST00000259154 RANGAP1P46060 587 aaPredicted RBP22.71■■□□□ 1.23
KCTD3-201ENST00000259154 GTF3C3Q9Y5Q9 886 aa22.65■■□□□ 1.22
KCTD3-201ENST00000259154 CECR2Q9BXF3 1484 aa22.58■■□□□ 1.21
KCTD3-201ENST00000259154 SCAF1Q9H7N4 1312 aaKnown RBP22.57■■□□□ 1.2
KCTD3-201ENST00000259154 BICRAQ9NZM4 1560 aa22.46■■□□□ 1.19
KCTD3-201ENST00000259154 DIEXFQ68CQ4 756 aaKnown RBP22.44■■□□□ 1.18
KCTD3-201ENST00000259154 MYT1Q01538 1121 aa22.44■■□□□ 1.18
KCTD3-201ENST00000259154 MROH2BQ7Z745 1585 aa22.38■■□□□ 1.17
KCTD3-201ENST00000259154 NEUROD1Q13562 356 aa22.3■■□□□ 1.16
KCTD3-201ENST00000259154 APLP2Q06481 763 aa22.29■■□□□ 1.16
KCTD3-201ENST00000259154 ACIN1Q9UKV3 1341 aaKnown RBP22.28■■□□□ 1.16
KCTD3-201ENST00000259154 WIZO95785 1651 aa22.27■■□□□ 1.16
KCTD3-201ENST00000259154 BAZ1AQ9NRL2 1556 aaPredicted RBP22.24■■□□□ 1.15
KCTD3-201ENST00000259154 UBTFP17480 764 aaKnown RBP22.23■■□□□ 1.15
KCTD3-201ENST00000259154 HNRNPUL2Q1KMD3 747 aaKnown RBP22.21■■□□□ 1.15
KCTD3-201ENST00000259154 SMARCA4P51532 1647 aa22.21■■□□□ 1.15
KCTD3-201ENST00000259154 EIF4G1Q04637 1599 aaKnown RBP22.19■■□□□ 1.14
KCTD3-201ENST00000259154 PABPN1Q86U42 306 aaKnown RBP eCLIP22.14■■□□□ 1.14
KCTD3-201ENST00000259154 ERICH6Q7L0X2 663 aa22.12■■□□□ 1.13
KCTD3-201ENST00000259154 PEG3Q9GZU2 1588 aa22.1■■□□□ 1.13
KCTD3-201ENST00000259154 BCANQ96GW7 911 aa22.08■■□□□ 1.13
KCTD3-201ENST00000259154 TOP2AP11388 1531 aaKnown RBP21.99■■□□□ 1.11
KCTD3-201ENST00000259154 ABCC8Q09428 1581 aa21.97■■□□□ 1.11
KCTD3-201ENST00000259154 ITGAEP38570 1179 aa21.93■■□□□ 1.1
KCTD3-201ENST00000259154 SMARCA2P51531 1590 aa21.87■■□□□ 1.09
KCTD3-201ENST00000259154 CCDC88BA6NC98 1476 aa21.86■■□□□ 1.09
KCTD3-201ENST00000259154 NEFLP07196 543 aa21.86■■□□□ 1.09
KCTD3-201ENST00000259154 SOGA1O94964 1423 aa21.8■■□□□ 1.08
KCTD3-201ENST00000259154 ATP1B4Q9UN42 357 aaPredicted RBP21.77■■□□□ 1.08
KCTD3-201ENST00000259154 RUSC2Q8N2Y8 1516 aa21.76■■□□□ 1.07
KCTD3-201ENST00000259154 CNGB1Q14028 1251 aaPredicted RBP21.74■■□□□ 1.07
KCTD3-201ENST00000259154 ZNF316A6NFI3 1004 aaPredicted RBP21.71■■□□□ 1.07
KCTD3-201ENST00000259154 ATAD2BQ9ULI0 1458 aa21.63■■□□□ 1.05
KCTD3-201ENST00000259154 MIER1Q8N108 512 aa21.6■■□□□ 1.05
KCTD3-201ENST00000259154 CSRNP3Q8WYN3 585 aa21.56■■□□□ 1.04
KCTD3-201ENST00000259154 CEP162Q5TB80 1403 aa21.56■■□□□ 1.04
KCTD3-201ENST00000259154 HMGXB3Q12766 1538 aa21.48■■□□□ 1.03
KCTD3-201ENST00000259154 NCAPD3P42695 1498 aa21.39■■□□□ 1.01
KCTD3-201ENST00000259154 BAZ1BQ9UIG0 1483 aaKnown RBP21.35■■□□□ 1.01
KCTD3-201ENST00000259154 WRNQ14191 1432 aaPredicted RBP eCLIP21.35■■□□□ 1.01
KCTD3-201ENST00000259154 FKBP8Q14318 412 aa21.33■■□□□ 1
KCTD3-201ENST00000259154 TNIKQ9UKE5 1360 aa21.32■■□□□ 1
KCTD3-201ENST00000259154 POLR3GLQ9BT43 218 aa21.32■■□□□ 1
KCTD3-201ENST00000259154 PRDM2Q13029 1718 aa21.27■□□□□ 0.99
KCTD3-201ENST00000259154 SYNJ1O43426 1573 aa21.26■□□□□ 0.99
KCTD3-201ENST00000259154 GOLGA3Q08378 1498 aa21.19■□□□□ 0.98
KCTD3-201ENST00000259154 TRIM52Q96A61 297 aa21.18■□□□□ 0.98
KCTD3-201ENST00000259154 BIVM-ERCC5R4GMW8 1640 aa21.17■□□□□ 0.98
KCTD3-201ENST00000259154 RAPGEF2Q9Y4G8 1499 aa21.16■□□□□ 0.98
KCTD3-201ENST00000259154 IRX6P78412 446 aaPredicted RBP21.14■□□□□ 0.98
KCTD3-201ENST00000259154 HIRIP3Q9BW71 556 aaPredicted RBP21.14■□□□□ 0.98
KCTD3-201ENST00000259154 CLIP1P30622 1438 aa21.13■□□□□ 0.97
KCTD3-201ENST00000259154 CC2D2AQ9P2K1 1620 aa21.1■□□□□ 0.97
KCTD3-201ENST00000259154 TOP2BQ02880 1626 aa21.09■□□□□ 0.97
KCTD3-201ENST00000259154 DDX10Q13206 875 aaKnown RBP21.09■□□□□ 0.97
KCTD3-201ENST00000259154 BCL11AQ9H165 835 aa21.08■□□□□ 0.97
KCTD3-201ENST00000259154 ANP32EQ9BTT0 268 aa21.05■□□□□ 0.96
KCTD3-201ENST00000259154 EEA1Q15075 1411 aa21.04■□□□□ 0.96
KCTD3-201ENST00000259154 CFTRP13569 1480 aa21.04■□□□□ 0.96
KCTD3-201ENST00000259154 FAM50AQ14320 339 aaKnown RBP21.03■□□□□ 0.96
KCTD3-201ENST00000259154 CEP164Q9UPV0 1460 aa21.02■□□□□ 0.96
KCTD3-201ENST00000259154 KANK4Q5T7N3 995 aaPredicted RBP21.01■□□□□ 0.95
KCTD3-201ENST00000259154 NBR1Q14596 966 aa21.01■□□□□ 0.95
KCTD3-201ENST00000259154 RTL5Q5HYW3 569 aaPredicted RBP21■□□□□ 0.95
KCTD3-201ENST00000259154 CDK11AQ9UQ88 783 aaPredicted RBP21■□□□□ 0.95
KCTD3-201ENST00000259154 SUPT16HQ9Y5B9 1047 aaKnown RBP20.99■□□□□ 0.95
KCTD3-201ENST00000259154 SENP3-EIF4A1A0A087X0R7 540 aa20.93■□□□□ 0.94
KCTD3-201ENST00000259154 ANP32CO43423 234 aa20.93■□□□□ 0.94
KCTD3-201ENST00000259154 CUX1P39880 1505 aa20.92■□□□□ 0.94
KCTD3-201ENST00000259154 VPS8Q8N3P4 1428 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms