RNA–Protein interactions for RNA: ENST00000580446.1

CSNK1D-213, Transcript of casein kinase 1 delta, humanhuman

TSL 3

Gene CSNK1D, Length 612 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-213ENST00000580446 NISCHQ9Y2I1 1504 aa36.78■■■■□ 3.48
CSNK1D-213ENST00000580446 ABCC9O60706 1549 aa34.86■■■■□ 3.17
CSNK1D-213ENST00000580446 DNAJC5BQ9UF47 199 aa33.85■■■■□ 3.01
CSNK1D-213ENST00000580446 CCDC180Q9P1Z9 1646 aa33.34■■■□□ 2.93
CSNK1D-213ENST00000580446 RB1CC1Q8TDY2 1594 aa32.41■■■□□ 2.78
CSNK1D-213ENST00000580446 PABPN1Q86U42 306 aaKnown RBP eCLIP32.37■■■□□ 2.77
CSNK1D-213ENST00000580446 DCAF8L2P0C7V8 631 aa31.85■■■□□ 2.69
CSNK1D-213ENST00000580446 NACADO15069 1562 aa31.85■■■□□ 2.69
CSNK1D-213ENST00000580446 DNAJC5Q9H3Z4 198 aa31.75■■■□□ 2.67
CSNK1D-213ENST00000580446 UNC13AQ9UPW8 1703 aa31.66■■■□□ 2.66
CSNK1D-213ENST00000580446 BICRAQ9NZM4 1560 aa31.62■■■□□ 2.65
CSNK1D-213ENST00000580446 CECR2Q9BXF3 1484 aa31.44■■■□□ 2.62
CSNK1D-213ENST00000580446 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
CSNK1D-213ENST00000580446 EIF4G1Q04637 1599 aaKnown RBP30.92■■■□□ 2.54
CSNK1D-213ENST00000580446 MYO15BQ96JP2 1530 aa30.89■■■□□ 2.54
CSNK1D-213ENST00000580446 SHROOM4Q9ULL8 1493 aa30.78■■■□□ 2.52
CSNK1D-213ENST00000580446 SCRIBQ14160 1630 aa30.61■■■□□ 2.49
CSNK1D-213ENST00000580446 CUX2O14529 1486 aa30.29■■■□□ 2.44
CSNK1D-213ENST00000580446 ZCCHC6Q5VYS8 1495 aaKnown RBP30.23■■■□□ 2.43
CSNK1D-213ENST00000580446 DCAF1Q9Y4B6 1507 aa30.12■■■□□ 2.41
CSNK1D-213ENST00000580446 ERCC6Q03468 1493 aa30.11■■■□□ 2.41
CSNK1D-213ENST00000580446 TRIM41Q8WV44 630 aa30.1■■■□□ 2.41
CSNK1D-213ENST00000580446 NESP48681 1621 aa29.63■■■□□ 2.33
CSNK1D-213ENST00000580446 NCAPD3P42695 1498 aa29.48■■■□□ 2.31
CSNK1D-213ENST00000580446 THOC2Q8NI27 1593 aaKnown RBP29.4■■■□□ 2.3
CSNK1D-213ENST00000580446 ATAD2BQ9ULI0 1458 aa29.3■■■□□ 2.28
CSNK1D-213ENST00000580446 SMARCA2P51531 1590 aa29.3■■■□□ 2.28
CSNK1D-213ENST00000580446 HMGXB3Q12766 1538 aa29.11■■■□□ 2.25
CSNK1D-213ENST00000580446 KIF21AQ7Z4S6 1674 aa29.05■■■□□ 2.24
CSNK1D-213ENST00000580446 BAZ1BQ9UIG0 1483 aaKnown RBP28.96■■■□□ 2.23
CSNK1D-213ENST00000580446 LAMC3Q9Y6N6 1575 aa28.95■■■□□ 2.22
CSNK1D-213ENST00000580446 SMARCA4P51532 1647 aa28.94■■■□□ 2.22
CSNK1D-213ENST00000580446 BAZ1AQ9NRL2 1556 aaPredicted RBP28.88■■■□□ 2.21
CSNK1D-213ENST00000580446 PDS5BQ9NTI5 1447 aa28.88■■■□□ 2.21
CSNK1D-213ENST00000580446 OSCARQ8IYS5 282 aa28.81■■■□□ 2.2
CSNK1D-213ENST00000580446 MRC2Q9UBG0 1479 aa28.78■■■□□ 2.2
CSNK1D-213ENST00000580446 WDR62O43379 1518 aa28.7■■■□□ 2.19
CSNK1D-213ENST00000580446 RIMBP3CA6NJZ7 1639 aa28.59■■■□□ 2.17
CSNK1D-213ENST00000580446 RIMBP3BA6NNM3 1639 aa28.59■■■□□ 2.17
CSNK1D-213ENST00000580446 RIMBP3Q9UFD9 1639 aa28.59■■■□□ 2.17
CSNK1D-213ENST00000580446 CADPSQ9ULU8 1353 aa28.59■■■□□ 2.17
CSNK1D-213ENST00000580446 PEG3Q9GZU2 1588 aa28.54■■■□□ 2.16
CSNK1D-213ENST00000580446 TRHP20396 242 aaPredicted RBP28.45■■■□□ 2.14
CSNK1D-213ENST00000580446 MROH2BQ7Z745 1585 aa28.44■■■□□ 2.14
CSNK1D-213ENST00000580446 AEBP2Q6ZN18 517 aaPredicted RBP28.43■■■□□ 2.14
CSNK1D-213ENST00000580446 CEP164Q9UPV0 1460 aa28.41■■■□□ 2.14
CSNK1D-213ENST00000580446 ARHGEF11O15085 1522 aa28.38■■■□□ 2.13
CSNK1D-213ENST00000580446 CYB5RLQ6IPT4 315 aa28.36■■■□□ 2.13
CSNK1D-213ENST00000580446 FANCD2Q9BXW9 1451 aa28.31■■■□□ 2.12
CSNK1D-213ENST00000580446 URB2Q14146 1524 aaKnown RBP28.2■■■□□ 2.1
CSNK1D-213ENST00000580446 ZNF608Q9ULD9 1512 aaPredicted RBP28.11■■■□□ 2.09
CSNK1D-213ENST00000580446 ARAP1Q96P48 1450 aa28.07■■■□□ 2.08
CSNK1D-213ENST00000580446 WIZO95785 1651 aa28.01■■■□□ 2.07
CSNK1D-213ENST00000580446 CFTRP13569 1480 aa27.98■■■□□ 2.07
CSNK1D-213ENST00000580446 IFT140Q96RY7 1462 aa27.85■■■□□ 2.05
CSNK1D-213ENST00000580446 FBLN2P98095 1184 aa27.81■■■□□ 2.04
CSNK1D-213ENST00000580446 EIF4G3O43432 1585 aaKnown RBP27.77■■■□□ 2.04
CSNK1D-213ENST00000580446 CHD1O14646 1710 aa27.76■■■□□ 2.03
CSNK1D-213ENST00000580446 AQRO60306 1485 aaKnown RBP eCLIP27.7■■■□□ 2.024e-8■■■■■ 38.8
CSNK1D-213ENST00000580446 RSF1Q96T23 1441 aaPredicted RBP27.69■■■□□ 2.02
CSNK1D-213ENST00000580446 TOPBP1Q92547 1522 aa27.63■■■□□ 2.01
CSNK1D-213ENST00000580446 TOP2AP11388 1531 aaKnown RBP27.5■■□□□ 1.99
CSNK1D-213ENST00000580446 ILDR1Q86SU0 546 aaPredicted RBP27.46■■□□□ 1.99
CSNK1D-213ENST00000580446 TARBP1Q13395 1621 aaKnown RBP27.43■■□□□ 1.98
CSNK1D-213ENST00000580446 CLASP1Q7Z460 1538 aa27.41■■□□□ 1.98
CSNK1D-213ENST00000580446 PRDM2Q13029 1718 aa27.41■■□□□ 1.98
CSNK1D-213ENST00000580446 DNMBPQ6XZF7 1577 aa27.36■■□□□ 1.97
CSNK1D-213ENST00000580446 TDRD9Q8NDG6 1382 aaKnown RBP27.35■■□□□ 1.97
CSNK1D-213ENST00000580446 SNAPC4Q5SXM2 1469 aa27.33■■□□□ 1.97
CSNK1D-213ENST00000580446 RAD54L2Q9Y4B4 1467 aa27.32■■□□□ 1.96
CSNK1D-213ENST00000580446 POLA1P09884 1462 aaPredicted RBP27.29■■□□□ 1.96
CSNK1D-213ENST00000580446 ABCC8Q09428 1581 aa27.28■■□□□ 1.96
CSNK1D-213ENST00000580446 CCDC88BA6NC98 1476 aa27.28■■□□□ 1.96
CSNK1D-213ENST00000580446 CHMP7Q8WUX9 453 aaPredicted RBP27.28■■□□□ 1.96
CSNK1D-213ENST00000580446 GAPVD1Q14C86 1478 aa27.27■■□□□ 1.96
CSNK1D-213ENST00000580446 SYNJ1O43426 1573 aa27.23■■□□□ 1.95
CSNK1D-213ENST00000580446 SOGA1O94964 1423 aa27.15■■□□□ 1.94
CSNK1D-213ENST00000580446 ERCC6L2Q5T890 1561 aa27.08■■□□□ 1.93
CSNK1D-213ENST00000580446 MAGI1Q96QZ7 1491 aaPredicted RBP27.06■■□□□ 1.92
CSNK1D-213ENST00000580446 SYNJ2O15056 1496 aa27.03■■□□□ 1.92
CSNK1D-213ENST00000580446 KDM4FA0A1W2PPD8 638 aa27.02■■□□□ 1.92
CSNK1D-213ENST00000580446 GRIN2BQ13224 1484 aa26.99■■□□□ 1.91
CSNK1D-213ENST00000580446 FGD5Q6ZNL6 1462 aa26.98■■□□□ 1.91
CSNK1D-213ENST00000580446 KIF13AQ9H1H9 1805 aa26.88■■□□□ 1.89
CSNK1D-213ENST00000580446 WDR97A6NE52 1622 aa26.84■■□□□ 1.89
CSNK1D-213ENST00000580446 CEP170Q5SW79 1584 aa26.79■■□□□ 1.88
CSNK1D-213ENST00000580446 FAM69CQ0P6D2 419 aa26.78■■□□□ 1.88
CSNK1D-213ENST00000580446 CUX1P39880 1505 aa26.77■■□□□ 1.88
CSNK1D-213ENST00000580446 PBRM1Q86U86 1689 aa26.76■■□□□ 1.87
CSNK1D-213ENST00000580446 GRIN2AQ12879 1464 aa26.68■■□□□ 1.86
CSNK1D-213ENST00000580446 ABCC10Q5T3U5 1492 aa26.62■■□□□ 1.85
CSNK1D-213ENST00000580446 KDM6BO15054 1643 aa26.62■■□□□ 1.85
CSNK1D-213ENST00000580446 NUP160Q12769 1436 aa26.6■■□□□ 1.85
CSNK1D-213ENST00000580446 ABCA5Q8WWZ7 1642 aa26.57■■□□□ 1.84
CSNK1D-213ENST00000580446 SHROOM2Q13796 1616 aa26.56■■□□□ 1.84
CSNK1D-213ENST00000580446 DIP2BQ9P265 1576 aa26.54■■□□□ 1.84
CSNK1D-213ENST00000580446 PRG4Q92954 1404 aaPredicted RBP26.53■■□□□ 1.84
CSNK1D-213ENST00000580446 ADAMTS12P58397 1594 aa26.5■■□□□ 1.83
CSNK1D-213ENST00000580446 ABCA10Q8WWZ4 1543 aa26.49■■□□□ 1.83
CSNK1D-213ENST00000580446 HECW2Q9P2P5 1572 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms