Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 ATL2-208ENST00000449130 526 ntTSL 317.53■□□□□ 0.42e-6■□□□□ 11.2
SFPQP23246 ATL2-209ENST00000451483 576 ntTSL 415.56■□□□□ 0.082e-6■□□□□ 11.2
SFPQP23246 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.012e-6■□□□□ 11.2
SFPQP23246 ATL2-203ENST00000405384 1905 ntTSL 1 (best)14.84□□□□□ -0.032e-6■□□□□ 11.2
SFPQP23246 ATL2-206ENST00000419554 2335 ntTSL 2 BASIC13.61□□□□□ -0.232e-6■□□□□ 11.2
SFPQP23246 ATL2-207ENST00000443098 775 ntTSL 512.83□□□□□ -0.362e-6■□□□□ 11.2
SFPQP23246 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC12.53□□□□□ -0.42e-6■□□□□ 11.2
SFPQP23246 NEDD4L-215ENST00000586268 830 ntTSL 315.2■□□□□ 0.023e-7■□□□□ 11.1
SFPQP23246 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC14.62□□□□□ -0.073e-7■□□□□ 11.1
SFPQP23246 NEDD4L-210ENST00000585323 381 ntTSL 1 (best)13.83□□□□□ -0.23e-7■□□□□ 11.1
SFPQP23246 NEDD4L-216ENST00000587190 553 ntTSL 413.43□□□□□ -0.263e-7■□□□□ 11.1
SFPQP23246 NEDD4L-219ENST00000587634 628 ntTSL 412.44□□□□□ -0.423e-7■□□□□ 11.1
SFPQP23246 NEDD4L-206ENST00000431212 3338 ntTSL 1 (best) BASIC12.04□□□□□ -0.483e-7■□□□□ 11.1
SFPQP23246 NEDD4L-203ENST00000357895 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.633e-7■□□□□ 11.1
SFPQP23246 NEDD4L-214ENST00000586263 3347 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.743e-7■□□□□ 11.1
SFPQP23246 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC9.92□□□□□ -0.823e-7■□□□□ 11.1
SFPQP23246 NEDD4L-221ENST00000588066 579 ntTSL 59.82□□□□□ -0.843e-7■□□□□ 11.1
SFPQP23246 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC8.34□□□□□ -1.073e-7■□□□□ 11.1
SFPQP23246 NEDD4L-222ENST00000588494 505 ntTSL 43.38□□□□□ -1.873e-7■□□□□ 11.1
SFPQP23246 BCAR1-218ENST00000566982 3024 ntTSL 217.07■□□□□ 0.326e-8■□□□□ 11.1
SFPQP23246 MGST2-203ENST00000503816 1780 ntTSL 518.28■□□□□ 0.522e-6■□□□□ 11.1
SFPQP23246 MGST2-206ENST00000515137 1013 ntTSL 1 (best)9.93□□□□□ -0.822e-6■□□□□ 11.1
SFPQP23246 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC9.71□□□□□ -0.862e-6■□□□□ 11.1
SFPQP23246 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.89■■■□□ 2.388e-7■□□□□ 11.1
SFPQP23246 CPNE1-216ENST00000437340 1755 ntTSL 1 (best)28.94■■■□□ 2.228e-7■□□□□ 11.1
SFPQP23246 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.148e-7■□□□□ 11.1
SFPQP23246 CPNE1-205ENST00000401607 1795 ntTSL 528.37■■■□□ 2.138e-7■□□□□ 11.1
SFPQP23246 CPNE1-207ENST00000414664 1070 ntTSL 528.13■■■□□ 2.098e-7■□□□□ 11.1
SFPQP23246 CPNE1-212ENST00000430570 1332 ntTSL 527.78■■■□□ 2.048e-7■□□□□ 11.1
SFPQP23246 CPNE1-217ENST00000439669 784 ntTSL 526.78■■□□□ 1.888e-7■□□□□ 11.1
SFPQP23246 CPNE1-220ENST00000458038 596 ntTSL 324.21■■□□□ 1.478e-7■□□□□ 11.1
SFPQP23246 CPNE1-211ENST00000420363 821 ntTSL 223.8■■□□□ 1.48e-7■□□□□ 11.1
SFPQP23246 CPNE1-219ENST00000440240 746 ntTSL 523.29■■□□□ 1.328e-7■□□□□ 11.1
SFPQP23246 CPNE1-204ENST00000397443 1928 ntAPPRIS P1 TSL 523.09■■□□□ 1.298e-7■□□□□ 11.1
SFPQP23246 CPNE1-210ENST00000416778 744 ntTSL 219.97■□□□□ 0.798e-7■□□□□ 11.1
SFPQP23246 CPNE1-213ENST00000434795 831 ntTSL 319.97■□□□□ 0.798e-7■□□□□ 11.1
SFPQP23246 CPNE1-224ENST00000483359 1975 ntTSL 519.67■□□□□ 0.748e-7■□□□□ 11.1
SFPQP23246 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.26■□□□□ 0.518e-7■□□□□ 11.1
SFPQP23246 CPNE1-208ENST00000414711 673 ntTSL 517.82■□□□□ 0.448e-7■□□□□ 11.1
SFPQP23246 CPNE1-215ENST00000437100 826 ntTSL 516.31■□□□□ 0.28e-7■□□□□ 11.1
SFPQP23246 CPNE1-206ENST00000412056 998 ntTSL 315.44■□□□□ 0.068e-7■□□□□ 11.1
SFPQP23246 CPNE1-218ENST00000439806 748 ntTSL 511.88□□□□□ -0.518e-7■□□□□ 11.1
SFPQP23246 CPNE1-214ENST00000435747 400 ntTSL 311.63□□□□□ -0.558e-7■□□□□ 11.1
SFPQP23246 AL109827.1-202ENST00000441563 611 ntAPPRIS ALT2 TSL 211.11□□□□□ -0.638e-7■□□□□ 11.1
SFPQP23246 AL109827.1-201ENST00000454607 679 ntAPPRIS ALT2 TSL 211.11□□□□□ -0.638e-7■□□□□ 11.1
SFPQP23246 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.422e-8■□□□□ 11.1
SFPQP23246 HLF-202ENST00000430986 1385 ntTSL 2 BASIC14.28□□□□□ -0.122e-8■□□□□ 11.1
SFPQP23246 HLF-204ENST00000572002 1251 ntTSL 314.06□□□□□ -0.162e-8■□□□□ 11.1
SFPQP23246 HLF-203ENST00000570962 1310 ntTSL 212.71□□□□□ -0.372e-8■□□□□ 11.1
SFPQP23246 HLF-208ENST00000573945 2977 ntTSL 5 BASIC10.83□□□□□ -0.682e-8■□□□□ 11.1
SFPQP23246 HLF-210ENST00000575345 3589 ntTSL 2 BASIC8.96□□□□□ -0.982e-8■□□□□ 11.1
SFPQP23246 KANSL1-214ENST00000576739 592 ntTSL 224.21■■□□□ 1.476e-7■□□□□ 11.1
SFPQP23246 KANSL1-225ENST00000639356 1717 ntTSL 520.81■□□□□ 0.926e-7■□□□□ 11.1
SFPQP23246 KANSL1-209ENST00000574655 1681 ntTSL 517.95■□□□□ 0.466e-7■□□□□ 11.1
SFPQP23246 KANSL1-222ENST00000639099 1724 ntTSL 517.8■□□□□ 0.446e-7■□□□□ 11.1
SFPQP23246 KANSL1-221ENST00000638902 1971 ntTSL 215.07■□□□□ 06e-7■□□□□ 11.1
SFPQP23246 AMBRA1-205ENST00000526606 522 ntTSL 422.01■■□□□ 1.112e-6■□□□□ 11
SFPQP23246 AMBRA1-210ENST00000531542 561 ntTSL 314.96□□□□□ -0.012e-6■□□□□ 11
SFPQP23246 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC14.21□□□□□ -0.132e-6■□□□□ 11
SFPQP23246 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.192e-6■□□□□ 11
SFPQP23246 AMBRA1-211ENST00000533727 4817 ntTSL 1 (best) BASIC12.76□□□□□ -0.372e-6■□□□□ 11
SFPQP23246 AMBRA1-202ENST00000458649 5351 ntTSL 2 BASIC12.14□□□□□ -0.472e-6■□□□□ 11
SFPQP23246 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC10.26□□□□□ -0.772e-6■□□□□ 11
SFPQP23246 SOX5-212ENST00000541536 2365 ntTSL 2 BASIC11.09□□□□□ -0.632e-6■□□□□ 11
SFPQP23246 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.24□□□□□ -1.412e-6■□□□□ 11
SFPQP23246 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.054e-7■□□□□ 11
SFPQP23246 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.024e-7■□□□□ 11
SFPQP23246 PTPRK-203ENST00000368207 4758 ntTSL 5 BASIC14.24□□□□□ -0.134e-7■□□□□ 11
SFPQP23246 PTPRK-217ENST00000524534 2441 ntTSL 513.37□□□□□ -0.274e-7■□□□□ 11
SFPQP23246 PTPRK-216ENST00000524481 3157 ntTSL 213.28□□□□□ -0.284e-7■□□□□ 11
SFPQP23246 PTPRK-221ENST00000532331 5757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.344e-7■□□□□ 11
SFPQP23246 PTPRK-205ENST00000368213 5816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.464e-7■□□□□ 11
SFPQP23246 PTPRK-206ENST00000368215 4651 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.844e-7■□□□□ 11
SFPQP23246 NEAT1-202ENST00000501122 22743 ntBASIC5.54□□□□□ -1.525e-49■□□□□ 11
SFPQP23246 PACSIN2-210ENST00000453643 818 ntTSL 517.88■□□□□ 0.452e-6■□□□□ 11
SFPQP23246 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.432e-6■□□□□ 11
SFPQP23246 PACSIN2-208ENST00000445706 511 ntTSL 513.2□□□□□ -0.32e-6■□□□□ 11
SFPQP23246 LARP4B-203ENST00000412411 432 ntTSL 39.04□□□□□ -0.963e-6■□□□□ 11
SFPQP23246 RAB1A-205ENST00000494188 771 ntTSL 225.5■■□□□ 1.674e-7■□□□□ 11
SFPQP23246 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.63■■□□□ 1.374e-7■□□□□ 11
SFPQP23246 CHD9-208ENST00000563410 488 ntTSL 223.51■■□□□ 1.352e-7■□□□□ 11
SFPQP23246 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.37■■□□□ 1.012e-9■□□□□ 11
SFPQP23246 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.69■□□□□ 0.94e-7■□□□□ 11
SFPQP23246 COA1-212ENST00000448704 1599 ntTSL 1 (best)19.87■□□□□ 0.772e-7■□□□□ 11
SFPQP23246 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.414e-7■□□□□ 11
SFPQP23246 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.11■□□□□ 0.174e-7■□□□□ 11
SFPQP23246 NR1H4-202ENST00000321046 1779 ntTSL 1 (best)14.78□□□□□ -0.042e-7■□□□□ 11
SFPQP23246 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.042e-7■□□□□ 11
SFPQP23246 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC14.57□□□□□ -0.082e-7■□□□□ 11
SFPQP23246 STAG1-203ENST00000434713 5064 ntTSL 5 BASIC14.1□□□□□ -0.152e-7■□□□□ 11
SFPQP23246 COA1-206ENST00000418140 1372 ntTSL 1 (best)13.74□□□□□ -0.212e-7■□□□□ 11
SFPQP23246 COA1-208ENST00000431651 720 ntAPPRIS ALT2 TSL 312.28□□□□□ -0.442e-7■□□□□ 11
SFPQP23246 NR1H4-201ENST00000188403 1630 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.442e-7■□□□□ 11
SFPQP23246 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.492e-7■□□□□ 11
SFPQP23246 COA1-214ENST00000457939 406 ntTSL 311.82□□□□□ -0.522e-7■□□□□ 11
SFPQP23246 COA1-213ENST00000451651 585 ntTSL 311.73□□□□□ -0.532e-7■□□□□ 11
SFPQP23246 NR1H4-207ENST00000549996 1633 ntTSL 1 (best) BASIC11.69□□□□□ -0.542e-7■□□□□ 11
SFPQP23246 STAG1-207ENST00000483235 5206 ntTSL 1 (best)11.64□□□□□ -0.552e-7■□□□□ 11
SFPQP23246 COA1-217ENST00000478504 552 ntTSL 411.6□□□□□ -0.552e-7■□□□□ 11
SFPQP23246 STAG1-210ENST00000629124 4322 ntTSL 5 BASIC11.58□□□□□ -0.562e-7■□□□□ 11
Retrieved 100 of 4,991 protein–RNA pairs in 149.1 ms