RNA–Protein interactions for RNA: ENST00000368215.7

PTPRK-206, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 4,651 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-206ENST00000368215 NISCHQ9Y2I1 1504 aa15.96■□□□□ 0.15
PTPRK-206ENST00000368215 DCAF8L2P0C7V8 631 aa15.01□□□□□ -0.01
PTPRK-206ENST00000368215 SHROOM4Q9ULL8 1493 aa14.68□□□□□ -0.06
PTPRK-206ENST00000368215 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
PTPRK-206ENST00000368215 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
PTPRK-206ENST00000368215 FAM9AQ8IZU1 332 aaPredicted RBP13.69□□□□□ -0.22
PTPRK-206ENST00000368215 PCGF6Q9BYE7 350 aa13.64□□□□□ -0.23
PTPRK-206ENST00000368215 CHIC1Q5VXU3 224 aa13.53□□□□□ -0.24
PTPRK-206ENST00000368215 TRIM41Q8WV44 630 aa13.5□□□□□ -0.25
PTPRK-206ENST00000368215 LOC105371045A0A1W2PR82 267 aa13.41□□□□□ -0.26
PTPRK-206ENST00000368215 TTBK1Q5TCY1 1321 aaPredicted RBP13.38□□□□□ -0.27
PTPRK-206ENST00000368215 ZCCHC6Q5VYS8 1495 aaKnown RBP13.34□□□□□ -0.27
PTPRK-206ENST00000368215 ABCC9O60706 1549 aa13.28□□□□□ -0.28
PTPRK-206ENST00000368215 PPARGC1BQ86YN6 1023 aaKnown RBP13.24□□□□□ -0.29
PTPRK-206ENST00000368215 RANGAP1P46060 587 aaPredicted RBP13.19□□□□□ -0.3
PTPRK-206ENST00000368215 CCDC180Q9P1Z9 1646 aa13.17□□□□□ -0.3
PTPRK-206ENST00000368215 HRCP23327 699 aa13.16□□□□□ -0.3
PTPRK-206ENST00000368215 UBTFP17480 764 aaKnown RBP13.12□□□□□ -0.31
PTPRK-206ENST00000368215 APLP2Q06481 763 aa13.12□□□□□ -0.31
PTPRK-206ENST00000368215 TRIM26Q12899 539 aaPredicted RBP13.12□□□□□ -0.31
PTPRK-206ENST00000368215 CCER1Q8TC90 406 aaPredicted RBP13.05□□□□□ -0.32
PTPRK-206ENST00000368215 PABPN1Q86U42 306 aaKnown RBP eCLIP13.03□□□□□ -0.32
PTPRK-206ENST00000368215 ZEB1P37275 1124 aaPredicted RBP13.01□□□□□ -0.33
PTPRK-206ENST00000368215 SCRIBQ14160 1630 aa13□□□□□ -0.33
PTPRK-206ENST00000368215 MYO15BQ96JP2 1530 aa12.93□□□□□ -0.34
PTPRK-206ENST00000368215 ATP1B4Q9UN42 357 aaPredicted RBP12.82□□□□□ -0.36
PTPRK-206ENST00000368215 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.8□□□□□ -0.36
PTPRK-206ENST00000368215 RSF1Q96T23 1441 aaPredicted RBP12.77□□□□□ -0.36
PTPRK-206ENST00000368215 HNRNPUL2Q1KMD3 747 aaKnown RBP12.75□□□□□ -0.37
PTPRK-206ENST00000368215 DCAF1Q9Y4B6 1507 aa12.71□□□□□ -0.37
PTPRK-206ENST00000368215 ITGAEP38570 1179 aa12.66□□□□□ -0.38
PTPRK-206ENST00000368215 YTHDC1Q96MU7 727 aaKnown RBP12.66□□□□□ -0.38
PTPRK-206ENST00000368215 CENPBP07199 599 aaPredicted RBP12.65□□□□□ -0.38
PTPRK-206ENST00000368215 CSRNP3Q8WYN3 585 aa12.62□□□□□ -0.39
PTPRK-206ENST00000368215 CECR2Q9BXF3 1484 aa12.61□□□□□ -0.39
PTPRK-206ENST00000368215 NACADO15069 1562 aa12.56□□□□□ -0.4
PTPRK-206ENST00000368215 RB1CC1Q8TDY2 1594 aa12.53□□□□□ -0.4
PTPRK-206ENST00000368215 DIEXFQ68CQ4 756 aaKnown RBP12.5□□□□□ -0.41
PTPRK-206ENST00000368215 MROH2BQ7Z745 1585 aa12.46□□□□□ -0.42
PTPRK-206ENST00000368215 PELP1Q8IZL8 1130 aaKnown RBP12.42□□□□□ -0.42
PTPRK-206ENST00000368215 FAM50AQ14320 339 aaKnown RBP12.38□□□□□ -0.43
PTPRK-206ENST00000368215 P3H3Q8IVL6 736 aa12.37□□□□□ -0.43
PTPRK-206ENST00000368215 BAZ1AQ9NRL2 1556 aaPredicted RBP12.37□□□□□ -0.43
PTPRK-206ENST00000368215 CEP162Q5TB80 1403 aa12.32□□□□□ -0.44
PTPRK-206ENST00000368215 WIZO95785 1651 aa12.31□□□□□ -0.44
PTPRK-206ENST00000368215 ZNF316A6NFI3 1004 aaPredicted RBP12.3□□□□□ -0.44
PTPRK-206ENST00000368215 WRNQ14191 1432 aaPredicted RBP eCLIP12.3□□□□□ -0.44
PTPRK-206ENST00000368215 SOGA1O94964 1423 aa12.29□□□□□ -0.44
PTPRK-206ENST00000368215 NEUROD1Q13562 356 aa12.28□□□□□ -0.44
PTPRK-206ENST00000368215 ABCC8Q09428 1581 aa12.27□□□□□ -0.44
PTPRK-206ENST00000368215 CCDC88BA6NC98 1476 aa12.27□□□□□ -0.45
PTPRK-206ENST00000368215 CLIP1P30622 1438 aa12.25□□□□□ -0.45
PTPRK-206ENST00000368215 BAZ1BQ9UIG0 1483 aaKnown RBP12.25□□□□□ -0.45
PTPRK-206ENST00000368215 GTF3C3Q9Y5Q9 886 aa12.23□□□□□ -0.45
PTPRK-206ENST00000368215 GOLGA3Q08378 1498 aa12.22□□□□□ -0.45
PTPRK-206ENST00000368215 TNIKQ9UKE5 1360 aa12.22□□□□□ -0.45
PTPRK-206ENST00000368215 EEA1Q15075 1411 aa12.21□□□□□ -0.45
PTPRK-206ENST00000368215 ARID3CA6NKF2 412 aa12.2□□□□□ -0.46
PTPRK-206ENST00000368215 CNGB1Q14028 1251 aaPredicted RBP12.17□□□□□ -0.46
PTPRK-206ENST00000368215 ACIN1Q9UKV3 1341 aaKnown RBP12.17□□□□□ -0.46
PTPRK-206ENST00000368215 NEFLP07196 543 aa12.17□□□□□ -0.46
PTPRK-206ENST00000368215 POLR3GLQ9BT43 218 aa12.16□□□□□ -0.46
PTPRK-206ENST00000368215 TRIM52Q96A61 297 aa12.15□□□□□ -0.46
PTPRK-206ENST00000368215 TOP2AP11388 1531 aaKnown RBP12.13□□□□□ -0.47
PTPRK-206ENST00000368215 CEP164Q9UPV0 1460 aa12.12□□□□□ -0.47
PTPRK-206ENST00000368215 FBLN2P98095 1184 aa12.11□□□□□ -0.47
PTPRK-206ENST00000368215 SMARCA4P51532 1647 aa12.08□□□□□ -0.48
PTPRK-206ENST00000368215 RUSC2Q8N2Y8 1516 aa12.08□□□□□ -0.48
PTPRK-206ENST00000368215 SCAF1Q9H7N4 1312 aaKnown RBP12.06□□□□□ -0.48
PTPRK-206ENST00000368215 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
PTPRK-206ENST00000368215 MIER1Q8N108 512 aa12.04□□□□□ -0.48
PTPRK-206ENST00000368215 BCANQ96GW7 911 aa12□□□□□ -0.49
PTPRK-206ENST00000368215 ATAD2BQ9ULI0 1458 aa11.99□□□□□ -0.49
PTPRK-206ENST00000368215 MYT1LQ9UL68 1186 aa11.99□□□□□ -0.49
PTPRK-206ENST00000368215 ZNF326Q5BKZ1 582 aaKnown RBP11.98□□□□□ -0.49
PTPRK-206ENST00000368215 CHIC2Q9UKJ5 165 aa11.98□□□□□ -0.49
PTPRK-206ENST00000368215 SMARCA2P51531 1590 aa11.98□□□□□ -0.49
PTPRK-206ENST00000368215 KANK4Q5T7N3 995 aaPredicted RBP11.97□□□□□ -0.49
PTPRK-206ENST00000368215 ANP32CO43423 234 aa11.96□□□□□ -0.49
PTPRK-206ENST00000368215 DDX10Q13206 875 aaKnown RBP11.96□□□□□ -0.49
PTPRK-206ENST00000368215 HIRIP3Q9BW71 556 aaPredicted RBP11.96□□□□□ -0.49
PTPRK-206ENST00000368215 VPS8Q8N3P4 1428 aa11.95□□□□□ -0.5
PTPRK-206ENST00000368215 ZNF777Q9ULD5 760 aaPredicted RBP11.95□□□□□ -0.5
PTPRK-206ENST00000368215 ERICH6Q7L0X2 663 aa11.94□□□□□ -0.5
PTPRK-206ENST00000368215 CUX2O14529 1486 aa11.94□□□□□ -0.5
PTPRK-206ENST00000368215 MTUS2Q5JR59 1369 aa11.93□□□□□ -0.5
PTPRK-206ENST00000368215 RAPGEF2Q9Y4G8 1499 aa11.93□□□□□ -0.5
PTPRK-206ENST00000368215 TONSLQ96HA7 1378 aa11.91□□□□□ -0.5
PTPRK-206ENST00000368215 CARMIL1Q5VZK9 1371 aa11.9□□□□□ -0.5
PTPRK-206ENST00000368215 RRP7BPQ9NSQ0 103 aa11.87□□□□□ -0.51
PTPRK-206ENST00000368215 SIN3AQ96ST3 1273 aa11.87□□□□□ -0.51
PTPRK-206ENST00000368215 CCNB3Q8WWL7 1395 aa11.86□□□□□ -0.51
PTPRK-206ENST00000368215 CDK11AQ9UQ88 783 aaPredicted RBP11.85□□□□□ -0.51
PTPRK-206ENST00000368215 CADPSQ9ULU8 1353 aa11.79□□□□□ -0.52
PTPRK-206ENST00000368215 CHMP7Q8WUX9 453 aaPredicted RBP11.79□□□□□ -0.52
PTPRK-206ENST00000368215 TDRD9Q8NDG6 1382 aaKnown RBP11.77□□□□□ -0.52
PTPRK-206ENST00000368215 FKBP8Q14318 412 aa11.77□□□□□ -0.53
PTPRK-206ENST00000368215 FHAD1B1AJZ9 1412 aa11.75□□□□□ -0.53
PTPRK-206ENST00000368215 CLSPNQ9HAW4 1339 aa11.75□□□□□ -0.53
PTPRK-206ENST00000368215 SYNJ1O43426 1573 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms