RNA–Protein interactions for RNA: ENST00000440240.5

CPNE1-219, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-219ENST00000440240 NISCHQ9Y2I1 1504 aa51.68■■■■■ 5.86
CPNE1-219ENST00000440240 CCDC180Q9P1Z9 1646 aa46.26■■■■■ 5
CPNE1-219ENST00000440240 ABCC9O60706 1549 aa46.25■■■■■ 4.99
CPNE1-219ENST00000440240 RB1CC1Q8TDY2 1594 aa44.07■■■■■ 4.65
CPNE1-219ENST00000440240 NACADO15069 1562 aa43.8■■■■■ 4.6
CPNE1-219ENST00000440240 DCAF8L2P0C7V8 631 aa43.72■■■■■ 4.59
CPNE1-219ENST00000440240 DNAJC5BQ9UF47 199 aa43.36■■■■■ 4.53
CPNE1-219ENST00000440240 MYO15BQ96JP2 1530 aa43.26■■■■■ 4.52
CPNE1-219ENST00000440240 PABPN1Q86U42 306 aaKnown RBP eCLIP43.14■■■■■ 4.5
CPNE1-219ENST00000440240 UNC13AQ9UPW8 1703 aa42.91■■■■■ 4.46
CPNE1-219ENST00000440240 ZCCHC6Q5VYS8 1495 aaKnown RBP42.81■■■■■ 4.44
CPNE1-219ENST00000440240 DCAF1Q9Y4B6 1507 aa42.71■■■■■ 4.43
CPNE1-219ENST00000440240 BICRAQ9NZM4 1560 aa42.71■■■■■ 4.43
CPNE1-219ENST00000440240 SHROOM4Q9ULL8 1493 aa42.24■■■■■ 4.35
CPNE1-219ENST00000440240 SCRIBQ14160 1630 aa42.14■■■■■ 4.34
CPNE1-219ENST00000440240 CC2D2AQ9P2K1 1620 aa41.75■■■■■ 4.27
CPNE1-219ENST00000440240 EIF4G1Q04637 1599 aaKnown RBP41.69■■■■■ 4.26
CPNE1-219ENST00000440240 CECR2Q9BXF3 1484 aa41.68■■■■■ 4.26
CPNE1-219ENST00000440240 NCAPD3P42695 1498 aa40.48■■■■■ 4.07
CPNE1-219ENST00000440240 ATAD2BQ9ULI0 1458 aa40.33■■■■■ 4.05
CPNE1-219ENST00000440240 SMARCA4P51532 1647 aa40.24■■■■■ 4.03
CPNE1-219ENST00000440240 SMARCA2P51531 1590 aa40.22■■■■■ 4.03
CPNE1-219ENST00000440240 BAZ1AQ9NRL2 1556 aaPredicted RBP40.12■■■■■ 4.01
CPNE1-219ENST00000440240 HMGXB3Q12766 1538 aa40.11■■■■■ 4.01
CPNE1-219ENST00000440240 ERCC6Q03468 1493 aa39.96■■■■□ 3.99
CPNE1-219ENST00000440240 BAZ1BQ9UIG0 1483 aaKnown RBP39.94■■■■□ 3.98
CPNE1-219ENST00000440240 PEG3Q9GZU2 1588 aa39.89■■■■□ 3.98
CPNE1-219ENST00000440240 CUX2O14529 1486 aa39.86■■■■□ 3.97
CPNE1-219ENST00000440240 DNAJC5Q9H3Z4 198 aa39.83■■■■□ 3.97
CPNE1-219ENST00000440240 MROH2BQ7Z745 1585 aa39.79■■■■□ 3.96
CPNE1-219ENST00000440240 NESP48681 1621 aa39.72■■■■□ 3.95
CPNE1-219ENST00000440240 LAMC3Q9Y6N6 1575 aa39.5■■■■□ 3.91
CPNE1-219ENST00000440240 PDS5BQ9NTI5 1447 aa39.35■■■■□ 3.89
CPNE1-219ENST00000440240 WIZO95785 1651 aa39.27■■■■□ 3.88
CPNE1-219ENST00000440240 CADPSQ9ULU8 1353 aa39.27■■■■□ 3.88
CPNE1-219ENST00000440240 THOC2Q8NI27 1593 aaKnown RBP39.25■■■■□ 3.87
CPNE1-219ENST00000440240 KIF21AQ7Z4S6 1674 aa39.13■■■■□ 3.86
CPNE1-219ENST00000440240 RSF1Q96T23 1441 aaPredicted RBP39.05■■■■□ 3.84
CPNE1-219ENST00000440240 MRC2Q9UBG0 1479 aa38.92■■■■□ 3.82
CPNE1-219ENST00000440240 TOP2AP11388 1531 aaKnown RBP38.83■■■■□ 3.81
CPNE1-219ENST00000440240 CFTRP13569 1480 aa38.8■■■■□ 3.8
CPNE1-219ENST00000440240 CEP164Q9UPV0 1460 aa38.8■■■■□ 3.8
CPNE1-219ENST00000440240 WDR62O43379 1518 aa38.79■■■■□ 3.8
CPNE1-219ENST00000440240 FANCD2Q9BXW9 1451 aa38.77■■■■□ 3.8
CPNE1-219ENST00000440240 CCDC88BA6NC98 1476 aa38.43■■■■□ 3.74
CPNE1-219ENST00000440240 URB2Q14146 1524 aaKnown RBP38.4■■■■□ 3.74
CPNE1-219ENST00000440240 PRDM2Q13029 1718 aa38.26■■■■□ 3.71
CPNE1-219ENST00000440240 OSCARQ8IYS5 282 aa38.17■■■■□ 3.7
CPNE1-219ENST00000440240 TRIM41Q8WV44 630 aa38.08■■■■□ 3.69
CPNE1-219ENST00000440240 IFT140Q96RY7 1462 aa38.05■■■■□ 3.68
CPNE1-219ENST00000440240 ABCC8Q09428 1581 aa38.04■■■■□ 3.68
CPNE1-219ENST00000440240 TOPBP1Q92547 1522 aa38.02■■■■□ 3.68
CPNE1-219ENST00000440240 ZNF608Q9ULD9 1512 aaPredicted RBP37.92■■■■□ 3.66
CPNE1-219ENST00000440240 DNMBPQ6XZF7 1577 aa37.87■■■■□ 3.65
CPNE1-219ENST00000440240 EIF4G3O43432 1585 aaKnown RBP37.66■■■■□ 3.62
CPNE1-219ENST00000440240 POLA1P09884 1462 aaPredicted RBP37.64■■■■□ 3.62
CPNE1-219ENST00000440240 TARBP1Q13395 1621 aaKnown RBP37.64■■■■□ 3.62
CPNE1-219ENST00000440240 AQRO60306 1485 aaKnown RBP eCLIP37.64■■■■□ 3.627e-7■■■■□ 21.9
CPNE1-219ENST00000440240 SOGA1O94964 1423 aa37.55■■■■□ 3.6
CPNE1-219ENST00000440240 RAD54L2Q9Y4B4 1467 aa37.5■■■■□ 3.59
CPNE1-219ENST00000440240 RIMBP3CA6NJZ7 1639 aa37.47■■■■□ 3.59
CPNE1-219ENST00000440240 RIMBP3BA6NNM3 1639 aa37.47■■■■□ 3.59
CPNE1-219ENST00000440240 RIMBP3Q9UFD9 1639 aa37.47■■■■□ 3.59
CPNE1-219ENST00000440240 FBLN2P98095 1184 aa37.46■■■■□ 3.59
CPNE1-219ENST00000440240 SUPT5HO00267 1087 aaKnown RBP37.45■■■■□ 3.59
CPNE1-219ENST00000440240 TDRD9Q8NDG6 1382 aaKnown RBP37.44■■■■□ 3.58
CPNE1-219ENST00000440240 FGD5Q6ZNL6 1462 aa37.41■■■■□ 3.58
CPNE1-219ENST00000440240 ARHGEF11O15085 1522 aa37.41■■■■□ 3.58
CPNE1-219ENST00000440240 CUX1P39880 1505 aa37.36■■■■□ 3.57
CPNE1-219ENST00000440240 CHD1O14646 1710 aa37.33■■■■□ 3.57
CPNE1-219ENST00000440240 WDR97A6NE52 1622 aa37.31■■■■□ 3.56
CPNE1-219ENST00000440240 CYB5RLQ6IPT4 315 aa37.25■■■■□ 3.55
CPNE1-219ENST00000440240 SNAPC4Q5SXM2 1469 aa37.21■■■■□ 3.55
CPNE1-219ENST00000440240 CHMP7Q8WUX9 453 aaPredicted RBP37.21■■■■□ 3.55
CPNE1-219ENST00000440240 GRIN2BQ13224 1484 aa37.19■■■■□ 3.54
CPNE1-219ENST00000440240 MAGI1Q96QZ7 1491 aaPredicted RBP37.16■■■■□ 3.54
CPNE1-219ENST00000440240 GAPVD1Q14C86 1478 aa37.06■■■■□ 3.52
CPNE1-219ENST00000440240 SYNJ2O15056 1496 aa37.04■■■■□ 3.52
CPNE1-219ENST00000440240 ARAP1Q96P48 1450 aa37.02■■■■□ 3.52
CPNE1-219ENST00000440240 ABCA10Q8WWZ4 1543 aa37.02■■■■□ 3.52
CPNE1-219ENST00000440240 SYNJ1O43426 1573 aa37■■■■□ 3.51
CPNE1-219ENST00000440240 CLASP1Q7Z460 1538 aa36.97■■■■□ 3.51
CPNE1-219ENST00000440240 WRNQ14191 1432 aaPredicted RBP eCLIP36.95■■■■□ 3.51
CPNE1-219ENST00000440240 PBRM1Q86U86 1689 aa36.89■■■■□ 3.5
CPNE1-219ENST00000440240 ABCA5Q8WWZ7 1642 aa36.88■■■■□ 3.49
CPNE1-219ENST00000440240 TRHP20396 242 aaPredicted RBP36.81■■■■□ 3.48
CPNE1-219ENST00000440240 TOP2BQ02880 1626 aa36.81■■■■□ 3.48
CPNE1-219ENST00000440240 BIVM-ERCC5R4GMW8 1640 aa36.76■■■■□ 3.48
CPNE1-219ENST00000440240 GRIN2AQ12879 1464 aa36.68■■■■□ 3.46
CPNE1-219ENST00000440240 FHAD1B1AJZ9 1412 aa36.61■■■■□ 3.45
CPNE1-219ENST00000440240 ADAMTS12P58397 1594 aa36.59■■■■□ 3.45
CPNE1-219ENST00000440240 ERICH3Q5RHP9 1530 aa36.56■■■■□ 3.44
CPNE1-219ENST00000440240 NUP160Q12769 1436 aa36.56■■■■□ 3.44
CPNE1-219ENST00000440240 CEP170Q5SW79 1584 aa36.48■■■■□ 3.43
CPNE1-219ENST00000440240 ERCC6L2Q5T890 1561 aa36.37■■■■□ 3.41
CPNE1-219ENST00000440240 SHROOM2Q13796 1616 aa36.31■■■■□ 3.4
CPNE1-219ENST00000440240 JPH4Q96JJ6 628 aa36.29■■■■□ 3.4
CPNE1-219ENST00000440240 PRG4Q92954 1404 aaPredicted RBP36.23■■■■□ 3.39
CPNE1-219ENST00000440240 KIF27Q86VH2 1401 aa36.18■■■■□ 3.38
CPNE1-219ENST00000440240 IGF1RP08069 1367 aa36.17■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms