RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 NISCHQ9Y2I1 1504 aa50.58■■■■■ 5.69
CPNE1-202ENST00000352393 CCDC180Q9P1Z9 1646 aa43.08■■■■■ 4.49
CPNE1-202ENST00000352393 SHROOM4Q9ULL8 1493 aa42.98■■■■■ 4.47
CPNE1-202ENST00000352393 ZCCHC6Q5VYS8 1495 aaKnown RBP42.9■■■■■ 4.46
CPNE1-202ENST00000352393 SUPT5HO00267 1087 aaKnown RBP42.22■■■■■ 4.35
CPNE1-202ENST00000352393 DCAF1Q9Y4B6 1507 aa41.64■■■■■ 4.26
CPNE1-202ENST00000352393 MYO15BQ96JP2 1530 aa41.37■■■■■ 4.21
CPNE1-202ENST00000352393 DCAF8L2P0C7V8 631 aa41.36■■■■■ 4.21
CPNE1-202ENST00000352393 CHIC1Q5VXU3 224 aa41.35■■■■■ 4.21
CPNE1-202ENST00000352393 ABCC9O60706 1549 aa40.59■■■■■ 4.09
CPNE1-202ENST00000352393 HRCP23327 699 aa40.55■■■■■ 4.08
CPNE1-202ENST00000352393 SCRIBQ14160 1630 aa40.19■■■■■ 4.02
CPNE1-202ENST00000352393 PCGF6Q9BYE7 350 aa40.19■■■■■ 4.02
CPNE1-202ENST00000352393 RSF1Q96T23 1441 aaPredicted RBP40.06■■■■■ 4
CPNE1-202ENST00000352393 LOC105371045A0A1W2PR82 267 aa39.98■■■■□ 3.99
CPNE1-202ENST00000352393 RB1CC1Q8TDY2 1594 aa39.77■■■■□ 3.96
CPNE1-202ENST00000352393 NACADO15069 1562 aa39.64■■■■□ 3.94
CPNE1-202ENST00000352393 PPARGC1BQ86YN6 1023 aaKnown RBP39.5■■■■□ 3.91
CPNE1-202ENST00000352393 TRIM26Q12899 539 aaPredicted RBP39.5■■■■□ 3.91
CPNE1-202ENST00000352393 TRIM41Q8WV44 630 aa39.38■■■■□ 3.9
CPNE1-202ENST00000352393 CECR2Q9BXF3 1484 aa39.33■■■■□ 3.89
CPNE1-202ENST00000352393 MROH2BQ7Z745 1585 aa39.29■■■■□ 3.88
CPNE1-202ENST00000352393 WIZO95785 1651 aa39.13■■■■□ 3.85
CPNE1-202ENST00000352393 BAZ1AQ9NRL2 1556 aaPredicted RBP39.02■■■■□ 3.84
CPNE1-202ENST00000352393 FAM9AQ8IZU1 332 aaPredicted RBP38.95■■■■□ 3.83
CPNE1-202ENST00000352393 EIF4G1Q04637 1599 aaKnown RBP38.91■■■■□ 3.82
CPNE1-202ENST00000352393 ZEB1P37275 1124 aaPredicted RBP38.8■■■■□ 3.8
CPNE1-202ENST00000352393 TOP2AP11388 1531 aaKnown RBP38.59■■■■□ 3.77
CPNE1-202ENST00000352393 SMARCA4P51532 1647 aa38.52■■■■□ 3.76
CPNE1-202ENST00000352393 EHMT2Q96KQ7 1210 aa38.5■■■■□ 3.75
CPNE1-202ENST00000352393 UNC13AQ9UPW8 1703 aa38.46■■■■□ 3.75
CPNE1-202ENST00000352393 SMARCA2P51531 1590 aa38.37■■■■□ 3.73
CPNE1-202ENST00000352393 CCDC88BA6NC98 1476 aa38.31■■■■□ 3.72
CPNE1-202ENST00000352393 ABCC8Q09428 1581 aa38.28■■■■□ 3.72
CPNE1-202ENST00000352393 WRNQ14191 1432 aaPredicted RBP eCLIP38.07■■■■□ 3.68
CPNE1-202ENST00000352393 EEA1Q15075 1411 aa37.93■■■■□ 3.66
CPNE1-202ENST00000352393 CEP162Q5TB80 1403 aa37.93■■■■□ 3.66
CPNE1-202ENST00000352393 SOGA1O94964 1423 aa37.92■■■■□ 3.66
CPNE1-202ENST00000352393 BICRAQ9NZM4 1560 aa37.88■■■■□ 3.65
CPNE1-202ENST00000352393 TNIKQ9UKE5 1360 aa37.87■■■■□ 3.65
CPNE1-202ENST00000352393 PEG3Q9GZU2 1588 aa37.84■■■■□ 3.65
CPNE1-202ENST00000352393 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.76■■■■□ 3.63
CPNE1-202ENST00000352393 RUSC2Q8N2Y8 1516 aa37.72■■■■□ 3.63
CPNE1-202ENST00000352393 CCER1Q8TC90 406 aaPredicted RBP37.69■■■■□ 3.62
CPNE1-202ENST00000352393 CSRNP3Q8WYN3 585 aa37.67■■■■□ 3.62
CPNE1-202ENST00000352393 PABPN1Q86U42 306 aaKnown RBP eCLIP37.65■■■■□ 3.621e-6■■□□□ 11.6
CPNE1-202ENST00000352393 GOLGA3Q08378 1498 aa37.64■■■■□ 3.62
CPNE1-202ENST00000352393 SYNJ1O43426 1573 aa37.51■■■■□ 3.59
CPNE1-202ENST00000352393 KIF21BO75037 1637 aa37.48■■■■□ 3.59
CPNE1-202ENST00000352393 SCAF1Q9H7N4 1312 aaKnown RBP37.46■■■■□ 3.59
CPNE1-202ENST00000352393 UBTFP17480 764 aaKnown RBP37.43■■■■□ 3.58
CPNE1-202ENST00000352393 CEP164Q9UPV0 1460 aa37.4■■■■□ 3.58
CPNE1-202ENST00000352393 TTBK1Q5TCY1 1321 aaPredicted RBP37.38■■■■□ 3.58
CPNE1-202ENST00000352393 ATAD2BQ9ULI0 1458 aa37.37■■■■□ 3.57
CPNE1-202ENST00000352393 BAZ1BQ9UIG0 1483 aaKnown RBP37.27■■■■□ 3.56
CPNE1-202ENST00000352393 CLIP1P30622 1438 aa37.15■■■■□ 3.54
CPNE1-202ENST00000352393 DIEXFQ68CQ4 756 aaKnown RBP37.13■■■■□ 3.54
CPNE1-202ENST00000352393 VPS8Q8N3P4 1428 aa37.09■■■■□ 3.53
CPNE1-202ENST00000352393 TOP2BQ02880 1626 aa37.07■■■■□ 3.52
CPNE1-202ENST00000352393 PELP1Q8IZL8 1130 aaKnown RBP37.07■■■■□ 3.52
CPNE1-202ENST00000352393 ACIN1Q9UKV3 1341 aaKnown RBP37.05■■■■□ 3.52
CPNE1-202ENST00000352393 RAPGEF2Q9Y4G8 1499 aa37.03■■■■□ 3.52
CPNE1-202ENST00000352393 BIVM-ERCC5R4GMW8 1640 aa37■■■■□ 3.51
CPNE1-202ENST00000352393 NEUROD1Q13562 356 aa36.93■■■■□ 3.5
CPNE1-202ENST00000352393 ZNF316A6NFI3 1004 aaPredicted RBP36.85■■■■□ 3.49
CPNE1-202ENST00000352393 ERICH3Q5RHP9 1530 aa36.82■■■■□ 3.48
CPNE1-202ENST00000352393 CENPBP07199 599 aaPredicted RBP36.79■■■■□ 3.48
CPNE1-202ENST00000352393 HMGXB3Q12766 1538 aa36.75■■■■□ 3.47
CPNE1-202ENST00000352393 HNRNPUL2Q1KMD3 747 aaKnown RBP36.74■■■■□ 3.47
CPNE1-202ENST00000352393 PRXQ9BXM0 1461 aa36.71■■■■□ 3.47
CPNE1-202ENST00000352393 APLP2Q06481 763 aa36.67■■■■□ 3.46
CPNE1-202ENST00000352393 NCAPD3P42695 1498 aa36.62■■■■□ 3.45
CPNE1-202ENST00000352393 ARAP1Q96P48 1450 aa36.61■■■■□ 3.45
CPNE1-202ENST00000352393 CUX1P39880 1505 aa36.59■■■■□ 3.45
CPNE1-202ENST00000352393 GTF3C3Q9Y5Q9 886 aa36.55■■■■□ 3.44
CPNE1-202ENST00000352393 RANGAP1P46060 587 aaPredicted RBP36.47■■■■□ 3.43
CPNE1-202ENST00000352393 KIF27Q86VH2 1401 aa36.42■■■■□ 3.42
CPNE1-202ENST00000352393 CFTRP13569 1480 aa36.41■■■■□ 3.42
CPNE1-202ENST00000352393 PRDM2Q13029 1718 aa36.37■■■■□ 3.41
CPNE1-202ENST00000352393 CLSPNQ9HAW4 1339 aa36.35■■■■□ 3.41
CPNE1-202ENST00000352393 MIER1Q8N108 512 aa36.29■■■■□ 3.4
CPNE1-202ENST00000352393 DHX57Q6P158 1386 aaKnown RBP36.29■■■■□ 3.4
CPNE1-202ENST00000352393 RRBP1Q9P2E9 1410 aaKnown RBP36.29■■■■□ 3.4
CPNE1-202ENST00000352393 KANK4Q5T7N3 995 aaPredicted RBP36.24■■■■□ 3.39
CPNE1-202ENST00000352393 ARHGAP35Q9NRY4 1499 aa36.22■■■■□ 3.39
CPNE1-202ENST00000352393 CUX2O14529 1486 aa36.19■■■■□ 3.38
CPNE1-202ENST00000352393 YTHDC1Q96MU7 727 aaKnown RBP36.15■■■■□ 3.38
CPNE1-202ENST00000352393 CCNB3Q8WWL7 1395 aa36.02■■■■□ 3.36
CPNE1-202ENST00000352393 MAP3K1Q13233 1512 aa35.97■■■■□ 3.35
CPNE1-202ENST00000352393 IGF1RP08069 1367 aa35.95■■■■□ 3.35
CPNE1-202ENST00000352393 TIAM1Q13009 1591 aa35.95■■■■□ 3.35
CPNE1-202ENST00000352393 FGD5Q6ZNL6 1462 aa35.86■■■■□ 3.33
CPNE1-202ENST00000352393 CADPSQ9ULU8 1353 aa35.86■■■■□ 3.33
CPNE1-202ENST00000352393 CC2D2AQ9P2K1 1620 aa35.84■■■■□ 3.33
CPNE1-202ENST00000352393 CARMIL1Q5VZK9 1371 aa35.8■■■■□ 3.32
CPNE1-202ENST00000352393 CFAP43Q8NDM7 1665 aa35.77■■■■□ 3.32
CPNE1-202ENST00000352393 LRRC9Q6ZRR7 1453 aa35.73■■■■□ 3.31
CPNE1-202ENST00000352393 MAPKBP1O60336 1514 aa35.73■■■■□ 3.31
CPNE1-202ENST00000352393 RAB3GAP2Q9H2M9 1393 aa35.71■■■■□ 3.31
CPNE1-202ENST00000352393 PCF11O94913 1555 aaKnown RBP35.66■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms