RNA–Protein interactions for RNA: ENST00000526606.1

AMBRA1-205, Transcript of autophagy and beclin 1 regulator 1, humanhuman

TSL 4

Gene AMBRA1, Length 522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1-205ENST00000526606 NISCHQ9Y2I1 1504 aa50.3■■■■■ 5.64
AMBRA1-205ENST00000526606 ABCC9O60706 1549 aa46.21■■■■■ 4.99
AMBRA1-205ENST00000526606 CCDC180Q9P1Z9 1646 aa45.35■■■■■ 4.85
AMBRA1-205ENST00000526606 DNAJC5BQ9UF47 199 aa44.22■■■■■ 4.67
AMBRA1-205ENST00000526606 RB1CC1Q8TDY2 1594 aa43.55■■■■■ 4.56
AMBRA1-205ENST00000526606 NACADO15069 1562 aa43.1■■■■■ 4.49
AMBRA1-205ENST00000526606 PABPN1Q86U42 306 aaKnown RBP eCLIP42.97■■■■■ 4.47
AMBRA1-205ENST00000526606 DCAF8L2P0C7V8 631 aa42.78■■■■■ 4.44
AMBRA1-205ENST00000526606 UNC13AQ9UPW8 1703 aa42.65■■■■■ 4.42
AMBRA1-205ENST00000526606 BICRAQ9NZM4 1560 aa42.46■■■■■ 4.39
AMBRA1-205ENST00000526606 MYO15BQ96JP2 1530 aa42.27■■■■■ 4.36
AMBRA1-205ENST00000526606 CC2D2AQ9P2K1 1620 aa41.69■■■■■ 4.26
AMBRA1-205ENST00000526606 CECR2Q9BXF3 1484 aa41.68■■■■■ 4.26
AMBRA1-205ENST00000526606 SHROOM4Q9ULL8 1493 aa41.63■■■■■ 4.25
AMBRA1-205ENST00000526606 ZCCHC6Q5VYS8 1495 aaKnown RBP41.49■■■■■ 4.23
AMBRA1-205ENST00000526606 DCAF1Q9Y4B6 1507 aa41.46■■■■■ 4.23
AMBRA1-205ENST00000526606 EIF4G1Q04637 1599 aaKnown RBP41.4■■■■■ 4.22
AMBRA1-205ENST00000526606 SCRIBQ14160 1630 aa41.33■■■■■ 4.21
AMBRA1-205ENST00000526606 DNAJC5Q9H3Z4 198 aa41.05■■■■■ 4.16
AMBRA1-205ENST00000526606 CUX2O14529 1486 aa40.07■■■■■ 4
AMBRA1-205ENST00000526606 NCAPD3P42695 1498 aa39.88■■■■□ 3.97
AMBRA1-205ENST00000526606 ERCC6Q03468 1493 aa39.85■■■■□ 3.97
AMBRA1-205ENST00000526606 ATAD2BQ9ULI0 1458 aa39.65■■■■□ 3.94
AMBRA1-205ENST00000526606 NESP48681 1621 aa39.53■■■■□ 3.92
AMBRA1-205ENST00000526606 HMGXB3Q12766 1538 aa39.42■■■■□ 3.9
AMBRA1-205ENST00000526606 SMARCA2P51531 1590 aa39.39■■■■□ 3.9
AMBRA1-205ENST00000526606 SMARCA4P51532 1647 aa39.36■■■■□ 3.89
AMBRA1-205ENST00000526606 THOC2Q8NI27 1593 aaKnown RBP39.2■■■■□ 3.87
AMBRA1-205ENST00000526606 BAZ1BQ9UIG0 1483 aaKnown RBP39.14■■■■□ 3.86
AMBRA1-205ENST00000526606 BAZ1AQ9NRL2 1556 aaPredicted RBP39.01■■■■□ 3.84
AMBRA1-205ENST00000526606 LAMC3Q9Y6N6 1575 aa39.01■■■■□ 3.84
AMBRA1-205ENST00000526606 PEG3Q9GZU2 1588 aa39■■■■□ 3.83
AMBRA1-205ENST00000526606 KIF21AQ7Z4S6 1674 aa38.9■■■■□ 3.82
AMBRA1-205ENST00000526606 TRIM41Q8WV44 630 aa38.87■■■■□ 3.81
AMBRA1-205ENST00000526606 PDS5BQ9NTI5 1447 aa38.82■■■■□ 3.81
AMBRA1-205ENST00000526606 MROH2BQ7Z745 1585 aa38.78■■■■□ 3.8
AMBRA1-205ENST00000526606 CADPSQ9ULU8 1353 aa38.61■■■■□ 3.77
AMBRA1-205ENST00000526606 MRC2Q9UBG0 1479 aa38.54■■■■□ 3.76
AMBRA1-205ENST00000526606 WDR62O43379 1518 aa38.48■■■■□ 3.75
AMBRA1-205ENST00000526606 WIZO95785 1651 aa38.25■■■■□ 3.71
AMBRA1-205ENST00000526606 CEP164Q9UPV0 1460 aa38.22■■■■□ 3.71
AMBRA1-205ENST00000526606 OSCARQ8IYS5 282 aa38.18■■■■□ 3.7
AMBRA1-205ENST00000526606 FANCD2Q9BXW9 1451 aa38.15■■■■□ 3.7
AMBRA1-205ENST00000526606 CFTRP13569 1480 aa38.02■■■■□ 3.68
AMBRA1-205ENST00000526606 URB2Q14146 1524 aaKnown RBP37.93■■■■□ 3.66
AMBRA1-205ENST00000526606 RIMBP3CA6NJZ7 1639 aa37.74■■■■□ 3.63
AMBRA1-205ENST00000526606 RIMBP3BA6NNM3 1639 aa37.74■■■■□ 3.63
AMBRA1-205ENST00000526606 RIMBP3Q9UFD9 1639 aa37.74■■■■□ 3.63
AMBRA1-205ENST00000526606 RSF1Q96T23 1441 aaPredicted RBP37.71■■■■□ 3.63
AMBRA1-205ENST00000526606 TOP2AP11388 1531 aaKnown RBP37.66■■■■□ 3.62
AMBRA1-205ENST00000526606 ZNF608Q9ULD9 1512 aaPredicted RBP37.61■■■■□ 3.61
AMBRA1-205ENST00000526606 ARHGEF11O15085 1522 aa37.54■■■■□ 3.6
AMBRA1-205ENST00000526606 IFT140Q96RY7 1462 aa37.5■■■■□ 3.59
AMBRA1-205ENST00000526606 PRDM2Q13029 1718 aa37.44■■■■□ 3.58
AMBRA1-205ENST00000526606 CYB5RLQ6IPT4 315 aa37.37■■■■□ 3.57
AMBRA1-205ENST00000526606 TOPBP1Q92547 1522 aa37.36■■■■□ 3.57
AMBRA1-205ENST00000526606 CCDC88BA6NC98 1476 aa37.33■■■■□ 3.57
AMBRA1-205ENST00000526606 EIF4G3O43432 1585 aaKnown RBP37.25■■■■□ 3.55
AMBRA1-205ENST00000526606 AQRO60306 1485 aaKnown RBP eCLIP37.17■■■■□ 3.541e-6■■□□□ 14.5
AMBRA1-205ENST00000526606 ARAP1Q96P48 1450 aa37.15■■■■□ 3.54
AMBRA1-205ENST00000526606 ABCC8Q09428 1581 aa37.15■■■■□ 3.54
AMBRA1-205ENST00000526606 TRHP20396 242 aaPredicted RBP37.13■■■■□ 3.53
AMBRA1-205ENST00000526606 CHD1O14646 1710 aa37.13■■■■□ 3.53
AMBRA1-205ENST00000526606 TARBP1Q13395 1621 aaKnown RBP37.1■■■■□ 3.53
AMBRA1-205ENST00000526606 DNMBPQ6XZF7 1577 aa37.1■■■■□ 3.53
AMBRA1-205ENST00000526606 FBLN2P98095 1184 aa37.01■■■■□ 3.52
AMBRA1-205ENST00000526606 POLA1P09884 1462 aaPredicted RBP36.93■■■■□ 3.5
AMBRA1-205ENST00000526606 RAD54L2Q9Y4B4 1467 aa36.86■■■■□ 3.49
AMBRA1-205ENST00000526606 TDRD9Q8NDG6 1382 aaKnown RBP36.82■■■■□ 3.49
AMBRA1-205ENST00000526606 SOGA1O94964 1423 aa36.76■■■■□ 3.47
AMBRA1-205ENST00000526606 CLASP1Q7Z460 1538 aa36.73■■■■□ 3.47
AMBRA1-205ENST00000526606 SNAPC4Q5SXM2 1469 aa36.69■■■■□ 3.46
AMBRA1-205ENST00000526606 CHMP7Q8WUX9 453 aaPredicted RBP36.61■■■■□ 3.45
AMBRA1-205ENST00000526606 FGD5Q6ZNL6 1462 aa36.57■■■■□ 3.45
AMBRA1-205ENST00000526606 AEBP2Q6ZN18 517 aaPredicted RBP36.55■■■■□ 3.44
AMBRA1-205ENST00000526606 SYNJ1O43426 1573 aa36.54■■■■□ 3.44
AMBRA1-205ENST00000526606 WDR97A6NE52 1622 aa36.54■■■■□ 3.44
AMBRA1-205ENST00000526606 MAGI1Q96QZ7 1491 aaPredicted RBP36.53■■■■□ 3.44
AMBRA1-205ENST00000526606 GRIN2BQ13224 1484 aa36.48■■■■□ 3.43
AMBRA1-205ENST00000526606 CUX1P39880 1505 aa36.46■■■■□ 3.43
AMBRA1-205ENST00000526606 SYNJ2O15056 1496 aa36.45■■■■□ 3.43
AMBRA1-205ENST00000526606 GAPVD1Q14C86 1478 aa36.38■■■■□ 3.41
AMBRA1-205ENST00000526606 PBRM1Q86U86 1689 aa36.24■■■■□ 3.39
AMBRA1-205ENST00000526606 ERCC6L2Q5T890 1561 aa36.18■■■■□ 3.38
AMBRA1-205ENST00000526606 ABCA10Q8WWZ4 1543 aa36.12■■■■□ 3.37
AMBRA1-205ENST00000526606 ABCA5Q8WWZ7 1642 aa36.12■■■■□ 3.37
AMBRA1-205ENST00000526606 GRIN2AQ12879 1464 aa36.02■■■■□ 3.36
AMBRA1-205ENST00000526606 CEP170Q5SW79 1584 aa35.98■■■■□ 3.35
AMBRA1-205ENST00000526606 NUP160Q12769 1436 aa35.97■■■■□ 3.35
AMBRA1-205ENST00000526606 ADAMTS12P58397 1594 aa35.88■■■■□ 3.33
AMBRA1-205ENST00000526606 SHROOM2Q13796 1616 aa35.86■■■■□ 3.33
AMBRA1-205ENST00000526606 KIF13AQ9H1H9 1805 aa35.82■■■■□ 3.32
AMBRA1-205ENST00000526606 WRNQ14191 1432 aaPredicted RBP eCLIP35.8■■■■□ 3.32
AMBRA1-205ENST00000526606 FHAD1B1AJZ9 1412 aa35.76■■■■□ 3.32
AMBRA1-205ENST00000526606 PRG4Q92954 1404 aaPredicted RBP35.66■■■■□ 3.3
AMBRA1-205ENST00000526606 JPH4Q96JJ6 628 aa35.63■■■■□ 3.29
AMBRA1-205ENST00000526606 ERICH3Q5RHP9 1530 aa35.62■■■■□ 3.29
AMBRA1-205ENST00000526606 TOP2BQ02880 1626 aa35.61■■■■□ 3.29
AMBRA1-205ENST00000526606 BIVM-ERCC5R4GMW8 1640 aa35.61■■■■□ 3.29
AMBRA1-205ENST00000526606 FAM69CQ0P6D2 419 aa35.57■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms