RNA–Protein interactions for RNA: ENST00000368226.8

PTPRK-207, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRK, Length 6,087 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-207ENST00000368226 DCAF8L2P0C7V8 631 aa23.05■■□□□ 1.28
PTPRK-207ENST00000368226 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
PTPRK-207ENST00000368226 SHROOM4Q9ULL8 1493 aa21.41■■□□□ 1.02
PTPRK-207ENST00000368226 EHMT2Q96KQ7 1210 aa21.35■■□□□ 1.01
PTPRK-207ENST00000368226 NISCHQ9Y2I1 1504 aa21.31■■□□□ 1
PTPRK-207ENST00000368226 TTBK1Q5TCY1 1321 aaPredicted RBP20.55■□□□□ 0.88
PTPRK-207ENST00000368226 FAM9AQ8IZU1 332 aaPredicted RBP20.54■□□□□ 0.88
PTPRK-207ENST00000368226 APLP2Q06481 763 aa20.4■□□□□ 0.86
PTPRK-207ENST00000368226 RANGAP1P46060 587 aaPredicted RBP20.37■□□□□ 0.85
PTPRK-207ENST00000368226 ATP1B4Q9UN42 357 aaPredicted RBP20.07■□□□□ 0.8
PTPRK-207ENST00000368226 PCGF6Q9BYE7 350 aa20.02■□□□□ 0.8
PTPRK-207ENST00000368226 PELP1Q8IZL8 1130 aaKnown RBP19.89■□□□□ 0.77
PTPRK-207ENST00000368226 TRIM41Q8WV44 630 aa19.88■□□□□ 0.77
PTPRK-207ENST00000368226 UBTFP17480 764 aaKnown RBP19.76■□□□□ 0.75
PTPRK-207ENST00000368226 PPARGC1BQ86YN6 1023 aaKnown RBP19.68■□□□□ 0.74
PTPRK-207ENST00000368226 CCER1Q8TC90 406 aaPredicted RBP19.68■□□□□ 0.74
PTPRK-207ENST00000368226 YTHDC1Q96MU7 727 aaKnown RBP19.42■□□□□ 0.7
PTPRK-207ENST00000368226 ERICH6Q7L0X2 663 aa19.33■□□□□ 0.68
PTPRK-207ENST00000368226 ITGAEP38570 1179 aa19.32■□□□□ 0.68
PTPRK-207ENST00000368226 MYT1LQ9UL68 1186 aa19.32■□□□□ 0.68
PTPRK-207ENST00000368226 CENPBP07199 599 aaPredicted RBP19.32■□□□□ 0.68
PTPRK-207ENST00000368226 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.31■□□□□ 0.68
PTPRK-207ENST00000368226 HNRNPUL2Q1KMD3 747 aaKnown RBP19.31■□□□□ 0.68
PTPRK-207ENST00000368226 ZEB1P37275 1124 aaPredicted RBP19.27■□□□□ 0.68
PTPRK-207ENST00000368226 CHIC1Q5VXU3 224 aa19.18■□□□□ 0.66
PTPRK-207ENST00000368226 POLR3GLQ9BT43 218 aa19.18■□□□□ 0.66
PTPRK-207ENST00000368226 CNGB1Q14028 1251 aaPredicted RBP19.14■□□□□ 0.65
PTPRK-207ENST00000368226 LOC105371045A0A1W2PR82 267 aa19.12■□□□□ 0.65
PTPRK-207ENST00000368226 NEFLP07196 543 aa19.07■□□□□ 0.64
PTPRK-207ENST00000368226 PABPN1Q86U42 306 aaKnown RBP eCLIP18.99■□□□□ 0.63
PTPRK-207ENST00000368226 TRIM26Q12899 539 aaPredicted RBP18.94■□□□□ 0.62
PTPRK-207ENST00000368226 ABCC9O60706 1549 aa18.89■□□□□ 0.61
PTPRK-207ENST00000368226 SLC4A1APQ9BWU0 796 aaKnown RBP18.85■□□□□ 0.61
PTPRK-207ENST00000368226 HRCP23327 699 aa18.73■□□□□ 0.59
PTPRK-207ENST00000368226 FAM50AQ14320 339 aaKnown RBP18.71■□□□□ 0.59
PTPRK-207ENST00000368226 FBLN2P98095 1184 aa18.63■□□□□ 0.57
PTPRK-207ENST00000368226 TRIM52Q96A61 297 aa18.6■□□□□ 0.57
PTPRK-207ENST00000368226 DAXXQ9UER7 740 aaPredicted RBP18.56■□□□□ 0.56
PTPRK-207ENST00000368226 NEUROD1Q13562 356 aa18.56■□□□□ 0.56
PTPRK-207ENST00000368226 ARID3CA6NKF2 412 aa18.54■□□□□ 0.56
PTPRK-207ENST00000368226 ZNF326Q5BKZ1 582 aaKnown RBP18.49■□□□□ 0.55
PTPRK-207ENST00000368226 MYT1Q01538 1121 aa18.47■□□□□ 0.55
PTPRK-207ENST00000368226 P3H3Q8IVL6 736 aa18.43■□□□□ 0.54
PTPRK-207ENST00000368226 DIEXFQ68CQ4 756 aaKnown RBP18.36■□□□□ 0.53
PTPRK-207ENST00000368226 CLSPNQ9HAW4 1339 aa18.34■□□□□ 0.53
PTPRK-207ENST00000368226 BCL11AQ9H165 835 aa18.27■□□□□ 0.52
PTPRK-207ENST00000368226 BCANQ96GW7 911 aa18.26■□□□□ 0.51
PTPRK-207ENST00000368226 SLC24A1O60721 1099 aa18.24■□□□□ 0.51
PTPRK-207ENST00000368226 ZNF777Q9ULD5 760 aaPredicted RBP18.23■□□□□ 0.51
PTPRK-207ENST00000368226 PLPPR3Q6T4P5 718 aa18.2■□□□□ 0.5
PTPRK-207ENST00000368226 ZNF316A6NFI3 1004 aaPredicted RBP18.18■□□□□ 0.5
PTPRK-207ENST00000368226 ANP32CO43423 234 aa18.08■□□□□ 0.48
PTPRK-207ENST00000368226 SCRIBQ14160 1630 aa18.05■□□□□ 0.48
PTPRK-207ENST00000368226 CSRNP3Q8WYN3 585 aa18.01■□□□□ 0.47
PTPRK-207ENST00000368226 RTL5Q5HYW3 569 aaPredicted RBP17.99■□□□□ 0.47
PTPRK-207ENST00000368226 CANXP27824 592 aaKnown RBP17.98■□□□□ 0.47
PTPRK-207ENST00000368226 CHGAP10645 457 aaKnown RBP17.98■□□□□ 0.47
PTPRK-207ENST00000368226 ZBTB47Q9UFB7 747 aaPredicted RBP17.94■□□□□ 0.46
PTPRK-207ENST00000368226 GTF3C3Q9Y5Q9 886 aa17.94■□□□□ 0.46
PTPRK-207ENST00000368226 ESF1Q9H501 851 aaKnown RBP17.9■□□□□ 0.46
PTPRK-207ENST00000368226 STAG3Q9UJ98 1225 aa17.87■□□□□ 0.45
PTPRK-207ENST00000368226 SENP3Q9H4L4 574 aaPredicted RBP17.86■□□□□ 0.45
PTPRK-207ENST00000368226 NEFMP07197 916 aa17.85■□□□□ 0.45
PTPRK-207ENST00000368226 CHIC2Q9UKJ5 165 aa17.84■□□□□ 0.45
PTPRK-207ENST00000368226 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.83■□□□□ 0.445e-7■■□□□ 13.3
PTPRK-207ENST00000368226 CDK11AQ9UQ88 783 aaPredicted RBP17.83■□□□□ 0.44
PTPRK-207ENST00000368226 NPM1P06748 294 aaKnown RBP eCLIP17.77■□□□□ 0.43
PTPRK-207ENST00000368226 SALL2Q9Y467 1007 aaPredicted RBP17.76■□□□□ 0.43
PTPRK-207ENST00000368226 NPM2Q86SE8 214 aaKnown RBP17.72■□□□□ 0.43
PTPRK-207ENST00000368226 PLEKHG5O94827 1062 aa17.7■□□□□ 0.42
PTPRK-207ENST00000368226 TONSLQ96HA7 1378 aa17.69■□□□□ 0.42
PTPRK-207ENST00000368226 KDM2AQ9Y2K7 1162 aa17.67■□□□□ 0.42
PTPRK-207ENST00000368226 FAM9BQ8IZU0 186 aa17.67■□□□□ 0.42
PTPRK-207ENST00000368226 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
PTPRK-207ENST00000368226 DDX10Q13206 875 aaKnown RBP17.64■□□□□ 0.42
PTPRK-207ENST00000368226 CHMP7Q8WUX9 453 aaPredicted RBP17.63■□□□□ 0.41
PTPRK-207ENST00000368226 HIRIP3Q9BW71 556 aaPredicted RBP17.6■□□□□ 0.41
PTPRK-207ENST00000368226 KCNH8Q96L42 1107 aa17.58■□□□□ 0.41
PTPRK-207ENST00000368226 HNRNPUQ00839 825 aaKnown RBP eCLIP17.58■□□□□ 0.4
PTPRK-207ENST00000368226 ZCCHC6Q5VYS8 1495 aaKnown RBP17.56■□□□□ 0.4
PTPRK-207ENST00000368226 A0A0G2JS52 829 aa17.56■□□□□ 0.4
PTPRK-207ENST00000368226 FKBP8Q14318 412 aa17.55■□□□□ 0.4
PTPRK-207ENST00000368226 ZBTB7CA1YPR0 619 aa17.55■□□□□ 0.4
PTPRK-207ENST00000368226 ACIN1Q9UKV3 1341 aaKnown RBP17.52■□□□□ 0.4
PTPRK-207ENST00000368226 RRP7BPQ9NSQ0 103 aa17.51■□□□□ 0.39
PTPRK-207ENST00000368226 MTUS2Q5JR59 1369 aa17.5■□□□□ 0.39
PTPRK-207ENST00000368226 TSPY4P0CV99 314 aa17.5■□□□□ 0.39
PTPRK-207ENST00000368226 TSPY10P0CW01 314 aa17.5■□□□□ 0.39
PTPRK-207ENST00000368226 ANP32AP39687 249 aaKnown RBP17.49■□□□□ 0.39
PTPRK-207ENST00000368226 SENP3-EIF4A1A0A087X0R7 540 aa17.48■□□□□ 0.39
PTPRK-207ENST00000368226 C14orf37Q86TY3 774 aa17.45■□□□□ 0.38
PTPRK-207ENST00000368226 TMC1Q8TDI8 760 aa17.44■□□□□ 0.38
PTPRK-207ENST00000368226 HSP90AA1P07900 732 aaKnown RBP17.41■□□□□ 0.38
PTPRK-207ENST00000368226 IRX6P78412 446 aaPredicted RBP17.41■□□□□ 0.38
PTPRK-207ENST00000368226 WDR43Q15061 677 aaKnown RBP eCLIP17.4■□□□□ 0.38
PTPRK-207ENST00000368226 RGL3Q3MIN7 710 aa17.39■□□□□ 0.37
PTPRK-207ENST00000368226 PPP1R15AO75807 674 aaPredicted RBP17.37■□□□□ 0.37
PTPRK-207ENST00000368226 MRS2Q9HD23 443 aa17.37■□□□□ 0.37
PTPRK-207ENST00000368226 CLIP1P30622 1438 aa17.36■□□□□ 0.37
PTPRK-207ENST00000368226 ARID4BQ4LE39 1312 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms