RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 NISCHQ9Y2I1 1504 aa58.07■■■■■ 6.89
CPNE1-205ENST00000401607 CCDC180Q9P1Z9 1646 aa50.58■■■■■ 5.69
CPNE1-205ENST00000401607 ZCCHC6Q5VYS8 1495 aaKnown RBP48.82■■■■■ 5.41
CPNE1-205ENST00000401607 DCAF1Q9Y4B6 1507 aa48■■■■■ 5.27
CPNE1-205ENST00000401607 DCAF8L2P0C7V8 631 aa47.85■■■■■ 5.25
CPNE1-205ENST00000401607 ABCC9O60706 1549 aa47.77■■■■■ 5.24
CPNE1-205ENST00000401607 SHROOM4Q9ULL8 1493 aa47.44■■■■■ 5.18
CPNE1-205ENST00000401607 MYO15BQ96JP2 1530 aa47.38■■■■■ 5.18
CPNE1-205ENST00000401607 NACADO15069 1562 aa47.07■■■■■ 5.13
CPNE1-205ENST00000401607 RB1CC1Q8TDY2 1594 aa46.64■■■■■ 5.06
CPNE1-205ENST00000401607 SCRIBQ14160 1630 aa46.56■■■■■ 5.04
CPNE1-205ENST00000401607 UNC13AQ9UPW8 1703 aa45.79■■■■■ 4.92
CPNE1-205ENST00000401607 SUPT5HO00267 1087 aaKnown RBP45.65■■■■■ 4.9
CPNE1-205ENST00000401607 BICRAQ9NZM4 1560 aa45.32■■■■■ 4.84
CPNE1-205ENST00000401607 CECR2Q9BXF3 1484 aa45.15■■■■■ 4.82
CPNE1-205ENST00000401607 RSF1Q96T23 1441 aaPredicted RBP45.09■■■■■ 4.81
CPNE1-205ENST00000401607 PABPN1Q86U42 306 aaKnown RBP eCLIP45.05■■■■■ 4.81e-6■■□□□ 11.6
CPNE1-205ENST00000401607 MROH2BQ7Z745 1585 aa44.9■■■■■ 4.78
CPNE1-205ENST00000401607 BAZ1AQ9NRL2 1556 aaPredicted RBP44.81■■■■■ 4.76
CPNE1-205ENST00000401607 SMARCA4P51532 1647 aa44.63■■■■■ 4.74
CPNE1-205ENST00000401607 WIZO95785 1651 aa44.54■■■■■ 4.72
CPNE1-205ENST00000401607 PEG3Q9GZU2 1588 aa44.08■■■■■ 4.65
CPNE1-205ENST00000401607 TOP2AP11388 1531 aaKnown RBP44.05■■■■■ 4.64
CPNE1-205ENST00000401607 EIF4G1Q04637 1599 aaKnown RBP43.91■■■■■ 4.62
CPNE1-205ENST00000401607 ATAD2BQ9ULI0 1458 aa43.87■■■■■ 4.61
CPNE1-205ENST00000401607 SMARCA2P51531 1590 aa43.81■■■■■ 4.6
CPNE1-205ENST00000401607 CHIC1Q5VXU3 224 aa43.77■■■■■ 4.6
CPNE1-205ENST00000401607 CCDC88BA6NC98 1476 aa43.61■■■■■ 4.57
CPNE1-205ENST00000401607 BAZ1BQ9UIG0 1483 aaKnown RBP43.6■■■■■ 4.57
CPNE1-205ENST00000401607 NCAPD3P42695 1498 aa43.46■■■■■ 4.55
CPNE1-205ENST00000401607 HMGXB3Q12766 1538 aa43.41■■■■■ 4.54
CPNE1-205ENST00000401607 CC2D2AQ9P2K1 1620 aa43.24■■■■■ 4.51
CPNE1-205ENST00000401607 TRIM41Q8WV44 630 aa42.88■■■■■ 4.46
CPNE1-205ENST00000401607 ABCC8Q09428 1581 aa42.75■■■■■ 4.43
CPNE1-205ENST00000401607 CFTRP13569 1480 aa42.53■■■■■ 4.4
CPNE1-205ENST00000401607 WRNQ14191 1432 aaPredicted RBP eCLIP42.42■■■■■ 4.38
CPNE1-205ENST00000401607 CADPSQ9ULU8 1353 aa42.34■■■■■ 4.37
CPNE1-205ENST00000401607 PRDM2Q13029 1718 aa42.32■■■■■ 4.37
CPNE1-205ENST00000401607 SYNJ1O43426 1573 aa42.29■■■■■ 4.36
CPNE1-205ENST00000401607 DNAJC5BQ9UF47 199 aa42.17■■■■■ 4.34
CPNE1-205ENST00000401607 FAM9AQ8IZU1 332 aaPredicted RBP42.14■■■■■ 4.34
CPNE1-205ENST00000401607 LOC105371045A0A1W2PR82 267 aa42.11■■■■■ 4.33
CPNE1-205ENST00000401607 TOP2BQ02880 1626 aa42.08■■■■■ 4.33
CPNE1-205ENST00000401607 BIVM-ERCC5R4GMW8 1640 aa42.04■■■■■ 4.32
CPNE1-205ENST00000401607 NESP48681 1621 aa41.99■■■■■ 4.31
CPNE1-205ENST00000401607 CUX1P39880 1505 aa41.97■■■■■ 4.31
CPNE1-205ENST00000401607 LAMC3Q9Y6N6 1575 aa41.96■■■■■ 4.31
CPNE1-205ENST00000401607 SOGA1O94964 1423 aa41.96■■■■■ 4.31
CPNE1-205ENST00000401607 FANCD2Q9BXW9 1451 aa41.89■■■■■ 4.3
CPNE1-205ENST00000401607 EEA1Q15075 1411 aa41.82■■■■■ 4.29
CPNE1-205ENST00000401607 RUSC2Q8N2Y8 1516 aa41.82■■■■■ 4.28
CPNE1-205ENST00000401607 CEP164Q9UPV0 1460 aa41.6■■■■■ 4.25
CPNE1-205ENST00000401607 PDS5BQ9NTI5 1447 aa41.6■■■■■ 4.25
CPNE1-205ENST00000401607 CSRNP3Q8WYN3 585 aa41.59■■■■■ 4.25
CPNE1-205ENST00000401607 EHMT2Q96KQ7 1210 aa41.55■■■■■ 4.24
CPNE1-205ENST00000401607 DNMBPQ6XZF7 1577 aa41.54■■■■■ 4.24
CPNE1-205ENST00000401607 KIF21AQ7Z4S6 1674 aa41.48■■■■■ 4.23
CPNE1-205ENST00000401607 FGD5Q6ZNL6 1462 aa41.48■■■■■ 4.23
CPNE1-205ENST00000401607 TOPBP1Q92547 1522 aa41.46■■■■■ 4.23
CPNE1-205ENST00000401607 URB2Q14146 1524 aaKnown RBP41.4■■■■■ 4.22
CPNE1-205ENST00000401607 KIF21BO75037 1637 aa41.33■■■■■ 4.21
CPNE1-205ENST00000401607 KIF27Q86VH2 1401 aa41.31■■■■■ 4.2
CPNE1-205ENST00000401607 GOLGA3Q08378 1498 aa41.28■■■■■ 4.2
CPNE1-205ENST00000401607 POLA1P09884 1462 aaPredicted RBP41.27■■■■■ 4.2
CPNE1-205ENST00000401607 CUX2O14529 1486 aa41.22■■■■■ 4.19
CPNE1-205ENST00000401607 TNIKQ9UKE5 1360 aa41.16■■■■■ 4.18
CPNE1-205ENST00000401607 RAD54L2Q9Y4B4 1467 aa41.15■■■■■ 4.18
CPNE1-205ENST00000401607 ABCA10Q8WWZ4 1543 aa41.11■■■■■ 4.17
CPNE1-205ENST00000401607 PRXQ9BXM0 1461 aa41.1■■■■■ 4.17
CPNE1-205ENST00000401607 MRC2Q9UBG0 1479 aa41.1■■■■■ 4.17
CPNE1-205ENST00000401607 RAPGEF2Q9Y4G8 1499 aa41.09■■■■■ 4.17
CPNE1-205ENST00000401607 UBTFP17480 764 aaKnown RBP41.04■■■■■ 4.16
CPNE1-205ENST00000401607 ERICH3Q5RHP9 1530 aa41.02■■■■■ 4.16
CPNE1-205ENST00000401607 WDR97A6NE52 1622 aa41.01■■■■■ 4.16
CPNE1-205ENST00000401607 CEP162Q5TB80 1403 aa40.97■■■■■ 4.15
CPNE1-205ENST00000401607 IGF1RP08069 1367 aa40.96■■■■■ 4.15
CPNE1-205ENST00000401607 WDR62O43379 1518 aa40.9■■■■■ 4.14
CPNE1-205ENST00000401607 ERCC6Q03468 1493 aa40.89■■■■■ 4.14
CPNE1-205ENST00000401607 TARBP1Q13395 1621 aaKnown RBP40.86■■■■■ 4.13
CPNE1-205ENST00000401607 ABCA5Q8WWZ7 1642 aa40.79■■■■■ 4.12
CPNE1-205ENST00000401607 THOC2Q8NI27 1593 aaKnown RBP40.79■■■■■ 4.12
CPNE1-205ENST00000401607 CARMIL1Q5VZK9 1371 aa40.74■■■■■ 4.11
CPNE1-205ENST00000401607 TDRD9Q8NDG6 1382 aaKnown RBP40.71■■■■■ 4.11
CPNE1-205ENST00000401607 GAPVD1Q14C86 1478 aa40.66■■■■■ 4.1
CPNE1-205ENST00000401607 CUL7Q14999 1698 aa40.64■■■■■ 4.1
CPNE1-205ENST00000401607 CLIP1P30622 1438 aa40.62■■■■■ 4.09
CPNE1-205ENST00000401607 IFT140Q96RY7 1462 aa40.6■■■■■ 4.09
CPNE1-205ENST00000401607 PBRM1Q86U86 1689 aa40.46■■■■■ 4.07
CPNE1-205ENST00000401607 AQRO60306 1485 aaKnown RBP eCLIP40.45■■■■■ 4.073e-7■■■■■ 27
CPNE1-205ENST00000401607 ZNF608Q9ULD9 1512 aaPredicted RBP40.42■■■■■ 4.06
CPNE1-205ENST00000401607 RANGAP1P46060 587 aaPredicted RBP40.38■■■■■ 4.05
CPNE1-205ENST00000401607 GRIN2BQ13224 1484 aa40.32■■■■■ 4.05
CPNE1-205ENST00000401607 EIF4G3O43432 1585 aaKnown RBP40.29■■■■■ 4.04
CPNE1-205ENST00000401607 VPS8Q8N3P4 1428 aa40.28■■■■■ 4.04
CPNE1-205ENST00000401607 ARAP1Q96P48 1450 aa40.27■■■■■ 4.04
CPNE1-205ENST00000401607 ADAMTS12P58397 1594 aa40.25■■■■■ 4.03
CPNE1-205ENST00000401607 ARHGAP35Q9NRY4 1499 aa40.23■■■■■ 4.03
CPNE1-205ENST00000401607 PCGF6Q9BYE7 350 aa40.23■■■■■ 4.03
CPNE1-205ENST00000401607 CTTNBP2Q8WZ74 1663 aa40.22■■■■■ 4.03
CPNE1-205ENST00000401607 FHAD1B1AJZ9 1412 aa40.21■■■■■ 4.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms