RNA–Protein interactions for RNA: ENST00000483359.5

CPNE1-224, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,975 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-224ENST00000483359 NISCHQ9Y2I1 1504 aa42.5■■■■■ 4.39
CPNE1-224ENST00000483359 CCDC180Q9P1Z9 1646 aa37.56■■■■□ 3.6
CPNE1-224ENST00000483359 ABCC9O60706 1549 aa36.45■■■■□ 3.43
CPNE1-224ENST00000483359 ZCCHC6Q5VYS8 1495 aaKnown RBP35.51■■■■□ 3.27
CPNE1-224ENST00000483359 DCAF8L2P0C7V8 631 aa35.46■■■■□ 3.27
CPNE1-224ENST00000483359 NACADO15069 1562 aa35.19■■■■□ 3.22
CPNE1-224ENST00000483359 RB1CC1Q8TDY2 1594 aa35.17■■■■□ 3.22
CPNE1-224ENST00000483359 DCAF1Q9Y4B6 1507 aa35.1■■■■□ 3.21
CPNE1-224ENST00000483359 MYO15BQ96JP2 1530 aa35.06■■■■□ 3.2
CPNE1-224ENST00000483359 SCRIBQ14160 1630 aa34.45■■■■□ 3.11
CPNE1-224ENST00000483359 UNC13AQ9UPW8 1703 aa34.45■■■■□ 3.1
CPNE1-224ENST00000483359 PABPN1Q86U42 306 aaKnown RBP eCLIP34.14■■■■□ 3.061e-6■■□□□ 11.6
CPNE1-224ENST00000483359 BICRAQ9NZM4 1560 aa34.11■■■■□ 3.05
CPNE1-224ENST00000483359 SHROOM4Q9ULL8 1493 aa34.01■■■■□ 3.04
CPNE1-224ENST00000483359 EIF4G1Q04637 1599 aaKnown RBP33.19■■■□□ 2.9
CPNE1-224ENST00000483359 CECR2Q9BXF3 1484 aa33.12■■■□□ 2.89
CPNE1-224ENST00000483359 DNAJC5BQ9UF47 199 aa33.01■■■□□ 2.88
CPNE1-224ENST00000483359 CC2D2AQ9P2K1 1620 aa32.96■■■□□ 2.87
CPNE1-224ENST00000483359 SMARCA4P51532 1647 aa32.92■■■□□ 2.86
CPNE1-224ENST00000483359 BAZ1AQ9NRL2 1556 aaPredicted RBP32.91■■■□□ 2.86
CPNE1-224ENST00000483359 MROH2BQ7Z745 1585 aa32.81■■■□□ 2.84
CPNE1-224ENST00000483359 ATAD2BQ9ULI0 1458 aa32.59■■■□□ 2.81
CPNE1-224ENST00000483359 SMARCA2P51531 1590 aa32.56■■■□□ 2.8
CPNE1-224ENST00000483359 RSF1Q96T23 1441 aaPredicted RBP32.56■■■□□ 2.8
CPNE1-224ENST00000483359 PEG3Q9GZU2 1588 aa32.52■■■□□ 2.8
CPNE1-224ENST00000483359 WIZO95785 1651 aa32.52■■■□□ 2.8
CPNE1-224ENST00000483359 NCAPD3P42695 1498 aa32.46■■■□□ 2.79
CPNE1-224ENST00000483359 BAZ1BQ9UIG0 1483 aaKnown RBP32.39■■■□□ 2.78
CPNE1-224ENST00000483359 HMGXB3Q12766 1538 aa32.37■■■□□ 2.77
CPNE1-224ENST00000483359 SUPT5HO00267 1087 aaKnown RBP32.18■■■□□ 2.74
CPNE1-224ENST00000483359 TOP2AP11388 1531 aaKnown RBP32.13■■■□□ 2.73
CPNE1-224ENST00000483359 CCDC88BA6NC98 1476 aa31.76■■■□□ 2.67
CPNE1-224ENST00000483359 NESP48681 1621 aa31.68■■■□□ 2.66
CPNE1-224ENST00000483359 CADPSQ9ULU8 1353 aa31.57■■■□□ 2.64
CPNE1-224ENST00000483359 LAMC3Q9Y6N6 1575 aa31.57■■■□□ 2.64
CPNE1-224ENST00000483359 CFTRP13569 1480 aa31.48■■■□□ 2.63
CPNE1-224ENST00000483359 ERCC6Q03468 1493 aa31.37■■■□□ 2.61
CPNE1-224ENST00000483359 PDS5BQ9NTI5 1447 aa31.34■■■□□ 2.61
CPNE1-224ENST00000483359 KIF21AQ7Z4S6 1674 aa31.32■■■□□ 2.6
CPNE1-224ENST00000483359 PRDM2Q13029 1718 aa31.31■■■□□ 2.6
CPNE1-224ENST00000483359 FANCD2Q9BXW9 1451 aa31.26■■■□□ 2.59
CPNE1-224ENST00000483359 CEP164Q9UPV0 1460 aa31.18■■■□□ 2.58
CPNE1-224ENST00000483359 THOC2Q8NI27 1593 aaKnown RBP31.06■■■□□ 2.56
CPNE1-224ENST00000483359 MRC2Q9UBG0 1479 aa31.02■■■□□ 2.56
CPNE1-224ENST00000483359 URB2Q14146 1524 aaKnown RBP30.92■■■□□ 2.54
CPNE1-224ENST00000483359 WDR62O43379 1518 aa30.9■■■□□ 2.54
CPNE1-224ENST00000483359 ABCC8Q09428 1581 aa30.83■■■□□ 2.53
CPNE1-224ENST00000483359 TOPBP1Q92547 1522 aa30.8■■■□□ 2.52
CPNE1-224ENST00000483359 DNMBPQ6XZF7 1577 aa30.79■■■□□ 2.52
CPNE1-224ENST00000483359 CUX2O14529 1486 aa30.78■■■□□ 2.52
CPNE1-224ENST00000483359 CUX1P39880 1505 aa30.75■■■□□ 2.51
CPNE1-224ENST00000483359 WRNQ14191 1432 aaPredicted RBP eCLIP30.71■■■□□ 2.51
CPNE1-224ENST00000483359 SYNJ1O43426 1573 aa30.66■■■□□ 2.5
CPNE1-224ENST00000483359 FGD5Q6ZNL6 1462 aa30.59■■■□□ 2.49
CPNE1-224ENST00000483359 POLA1P09884 1462 aaPredicted RBP30.58■■■□□ 2.49
CPNE1-224ENST00000483359 TOP2BQ02880 1626 aa30.58■■■□□ 2.49
CPNE1-224ENST00000483359 BIVM-ERCC5R4GMW8 1640 aa30.57■■■□□ 2.48
CPNE1-224ENST00000483359 RAD54L2Q9Y4B4 1467 aa30.47■■■□□ 2.47
CPNE1-224ENST00000483359 IFT140Q96RY7 1462 aa30.46■■■□□ 2.47
CPNE1-224ENST00000483359 SOGA1O94964 1423 aa30.43■■■□□ 2.46
CPNE1-224ENST00000483359 TARBP1Q13395 1621 aaKnown RBP30.43■■■□□ 2.46
CPNE1-224ENST00000483359 ZNF608Q9ULD9 1512 aaPredicted RBP30.37■■■□□ 2.45
CPNE1-224ENST00000483359 WDR97A6NE52 1622 aa30.31■■■□□ 2.44
CPNE1-224ENST00000483359 TRIM41Q8WV44 630 aa30.3■■■□□ 2.44
CPNE1-224ENST00000483359 EIF4G3O43432 1585 aaKnown RBP30.27■■■□□ 2.44
CPNE1-224ENST00000483359 TDRD9Q8NDG6 1382 aaKnown RBP30.25■■■□□ 2.43
CPNE1-224ENST00000483359 ABCA10Q8WWZ4 1543 aa30.25■■■□□ 2.43
CPNE1-224ENST00000483359 AQRO60306 1485 aaKnown RBP eCLIP30.24■■■□□ 2.433e-7■■■■■ 27
CPNE1-224ENST00000483359 CHIC1Q5VXU3 224 aa30.21■■■□□ 2.43
CPNE1-224ENST00000483359 ABCA5Q8WWZ7 1642 aa30.13■■■□□ 2.41
CPNE1-224ENST00000483359 GAPVD1Q14C86 1478 aa30.11■■■□□ 2.41
CPNE1-224ENST00000483359 PBRM1Q86U86 1689 aa30.06■■■□□ 2.4
CPNE1-224ENST00000483359 GRIN2BQ13224 1484 aa30.02■■■□□ 2.4
CPNE1-224ENST00000483359 KIF27Q86VH2 1401 aa30.01■■■□□ 2.39
CPNE1-224ENST00000483359 SNAPC4Q5SXM2 1469 aa29.98■■■□□ 2.39
CPNE1-224ENST00000483359 RUSC2Q8N2Y8 1516 aa29.95■■■□□ 2.39
CPNE1-224ENST00000483359 ERICH3Q5RHP9 1530 aa29.9■■■□□ 2.38
CPNE1-224ENST00000483359 MAGI1Q96QZ7 1491 aaPredicted RBP29.88■■■□□ 2.37
CPNE1-224ENST00000483359 FBLN2P98095 1184 aa29.84■■■□□ 2.37
CPNE1-224ENST00000483359 ADAMTS12P58397 1594 aa29.83■■■□□ 2.37
CPNE1-224ENST00000483359 CHD1O14646 1710 aa29.81■■■□□ 2.36
CPNE1-224ENST00000483359 IGF1RP08069 1367 aa29.81■■■□□ 2.36
CPNE1-224ENST00000483359 SYNJ2O15056 1496 aa29.78■■■□□ 2.36
CPNE1-224ENST00000483359 FAM9AQ8IZU1 332 aaPredicted RBP29.77■■■□□ 2.36
CPNE1-224ENST00000483359 CHMP7Q8WUX9 453 aaPredicted RBP29.75■■■□□ 2.35
CPNE1-224ENST00000483359 FHAD1B1AJZ9 1412 aa29.74■■■□□ 2.35
CPNE1-224ENST00000483359 CUL7Q14999 1698 aa29.74■■■□□ 2.35
CPNE1-224ENST00000483359 EEA1Q15075 1411 aa29.67■■■□□ 2.34
CPNE1-224ENST00000483359 CARMIL1Q5VZK9 1371 aa29.66■■■□□ 2.34
CPNE1-224ENST00000483359 GRIN2AQ12879 1464 aa29.66■■■□□ 2.34
CPNE1-224ENST00000483359 CSRNP3Q8WYN3 585 aa29.61■■■□□ 2.33
CPNE1-224ENST00000483359 OSCARQ8IYS5 282 aa29.61■■■□□ 2.33
CPNE1-224ENST00000483359 RAPGEF2Q9Y4G8 1499 aa29.54■■■□□ 2.32
CPNE1-224ENST00000483359 PRXQ9BXM0 1461 aa29.53■■■□□ 2.32
CPNE1-224ENST00000483359 CEP170Q5SW79 1584 aa29.53■■■□□ 2.32
CPNE1-224ENST00000483359 NUP160Q12769 1436 aa29.47■■■□□ 2.31
CPNE1-224ENST00000483359 EHMT2Q96KQ7 1210 aa29.44■■■□□ 2.3
CPNE1-224ENST00000483359 CLASP1Q7Z460 1538 aa29.43■■■□□ 2.3
CPNE1-224ENST00000483359 KIF21BO75037 1637 aa29.4■■■□□ 2.3
CPNE1-224ENST00000483359 DNAJC5Q9H3Z4 198 aa29.32■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms