RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 NISCHQ9Y2I1 1504 aa56.91■■■■■ 6.7
CPNE1-216ENST00000437340 CCDC180Q9P1Z9 1646 aa49.89■■■■■ 5.58
CPNE1-216ENST00000437340 ZCCHC6Q5VYS8 1495 aaKnown RBP47.75■■■■■ 5.23
CPNE1-216ENST00000437340 ABCC9O60706 1549 aa47.45■■■■■ 5.19
CPNE1-216ENST00000437340 DCAF1Q9Y4B6 1507 aa47.05■■■■■ 5.12
CPNE1-216ENST00000437340 DCAF8L2P0C7V8 631 aa47■■■■■ 5.11
CPNE1-216ENST00000437340 MYO15BQ96JP2 1530 aa46.63■■■■■ 5.05
CPNE1-216ENST00000437340 SHROOM4Q9ULL8 1493 aa46.61■■■■■ 5.05
CPNE1-216ENST00000437340 NACADO15069 1562 aa46.48■■■■■ 5.03
CPNE1-216ENST00000437340 RB1CC1Q8TDY2 1594 aa46.19■■■■■ 4.99
CPNE1-216ENST00000437340 SCRIBQ14160 1630 aa45.81■■■■■ 4.92
CPNE1-216ENST00000437340 UNC13AQ9UPW8 1703 aa45.41■■■■■ 4.86
CPNE1-216ENST00000437340 SUPT5HO00267 1087 aaKnown RBP45.22■■■■■ 4.83
CPNE1-216ENST00000437340 BICRAQ9NZM4 1560 aa44.86■■■■■ 4.77
CPNE1-216ENST00000437340 PABPN1Q86U42 306 aaKnown RBP eCLIP44.61■■■■■ 4.731e-6■■□□□ 11.6
CPNE1-216ENST00000437340 CECR2Q9BXF3 1484 aa44.26■■■■■ 4.68
CPNE1-216ENST00000437340 RSF1Q96T23 1441 aaPredicted RBP44.19■■■■■ 4.66
CPNE1-216ENST00000437340 BAZ1AQ9NRL2 1556 aaPredicted RBP43.97■■■■■ 4.63
CPNE1-216ENST00000437340 MROH2BQ7Z745 1585 aa43.97■■■■■ 4.63
CPNE1-216ENST00000437340 SMARCA4P51532 1647 aa43.88■■■■■ 4.62
CPNE1-216ENST00000437340 CHIC1Q5VXU3 224 aa43.69■■■■■ 4.58
CPNE1-216ENST00000437340 WIZO95785 1651 aa43.64■■■■■ 4.58
CPNE1-216ENST00000437340 EIF4G1Q04637 1599 aaKnown RBP43.51■■■■■ 4.56
CPNE1-216ENST00000437340 PEG3Q9GZU2 1588 aa43.34■■■■■ 4.53
CPNE1-216ENST00000437340 ATAD2BQ9ULI0 1458 aa43.19■■■■■ 4.5
CPNE1-216ENST00000437340 SMARCA2P51531 1590 aa43.17■■■■■ 4.5
CPNE1-216ENST00000437340 TOP2AP11388 1531 aaKnown RBP43.14■■■■■ 4.5
CPNE1-216ENST00000437340 CC2D2AQ9P2K1 1620 aa42.98■■■■■ 4.47
CPNE1-216ENST00000437340 BAZ1BQ9UIG0 1483 aaKnown RBP42.93■■■■■ 4.46
CPNE1-216ENST00000437340 NCAPD3P42695 1498 aa42.86■■■■■ 4.45
CPNE1-216ENST00000437340 HMGXB3Q12766 1538 aa42.83■■■■■ 4.45
CPNE1-216ENST00000437340 CCDC88BA6NC98 1476 aa42.65■■■■■ 4.42
CPNE1-216ENST00000437340 TRIM41Q8WV44 630 aa42.5■■■■■ 4.39
CPNE1-216ENST00000437340 DNAJC5BQ9UF47 199 aa42.16■■■■■ 4.34
CPNE1-216ENST00000437340 LOC105371045A0A1W2PR82 267 aa42.01■■■■■ 4.32
CPNE1-216ENST00000437340 ABCC8Q09428 1581 aa41.86■■■■■ 4.29
CPNE1-216ENST00000437340 CFTRP13569 1480 aa41.82■■■■■ 4.28
CPNE1-216ENST00000437340 PRDM2Q13029 1718 aa41.76■■■■■ 4.28
CPNE1-216ENST00000437340 CADPSQ9ULU8 1353 aa41.72■■■■■ 4.27
CPNE1-216ENST00000437340 FAM9AQ8IZU1 332 aaPredicted RBP41.69■■■■■ 4.26
CPNE1-216ENST00000437340 WRNQ14191 1432 aaPredicted RBP eCLIP41.57■■■■■ 4.25
CPNE1-216ENST00000437340 NESP48681 1621 aa41.56■■■■■ 4.24
CPNE1-216ENST00000437340 LAMC3Q9Y6N6 1575 aa41.53■■■■■ 4.24
CPNE1-216ENST00000437340 EEA1Q15075 1411 aa41.38■■■■■ 4.21
CPNE1-216ENST00000437340 SYNJ1O43426 1573 aa41.33■■■■■ 4.21
CPNE1-216ENST00000437340 FANCD2Q9BXW9 1451 aa41.3■■■■■ 4.2
CPNE1-216ENST00000437340 SOGA1O94964 1423 aa41.25■■■■■ 4.19
CPNE1-216ENST00000437340 BIVM-ERCC5R4GMW8 1640 aa41.17■■■■■ 4.18
CPNE1-216ENST00000437340 TOP2BQ02880 1626 aa41.17■■■■■ 4.18
CPNE1-216ENST00000437340 KIF21AQ7Z4S6 1674 aa41.15■■■■■ 4.18
CPNE1-216ENST00000437340 CUX1P39880 1505 aa41.14■■■■■ 4.18
CPNE1-216ENST00000437340 PDS5BQ9NTI5 1447 aa41.14■■■■■ 4.18
CPNE1-216ENST00000437340 CEP164Q9UPV0 1460 aa41.09■■■■■ 4.17
CPNE1-216ENST00000437340 CSRNP3Q8WYN3 585 aa41.07■■■■■ 4.16
CPNE1-216ENST00000437340 EHMT2Q96KQ7 1210 aa41.04■■■■■ 4.16
CPNE1-216ENST00000437340 RUSC2Q8N2Y8 1516 aa41.04■■■■■ 4.16
CPNE1-216ENST00000437340 DNMBPQ6XZF7 1577 aa40.9■■■■■ 4.14
CPNE1-216ENST00000437340 URB2Q14146 1524 aaKnown RBP40.84■■■■■ 4.13
CPNE1-216ENST00000437340 TOPBP1Q92547 1522 aa40.83■■■■■ 4.13
CPNE1-216ENST00000437340 TNIKQ9UKE5 1360 aa40.83■■■■■ 4.13
CPNE1-216ENST00000437340 PCGF6Q9BYE7 350 aa40.83■■■■■ 4.13
CPNE1-216ENST00000437340 GOLGA3Q08378 1498 aa40.8■■■■■ 4.12
CPNE1-216ENST00000437340 KIF21BO75037 1637 aa40.74■■■■■ 4.11
CPNE1-216ENST00000437340 FGD5Q6ZNL6 1462 aa40.74■■■■■ 4.11
CPNE1-216ENST00000437340 TRIM26Q12899 539 aaPredicted RBP40.71■■■■■ 4.11
CPNE1-216ENST00000437340 ERCC6Q03468 1493 aa40.7■■■■■ 4.11
CPNE1-216ENST00000437340 MRC2Q9UBG0 1479 aa40.69■■■■■ 4.1
CPNE1-216ENST00000437340 CEP162Q5TB80 1403 aa40.63■■■■■ 4.09
CPNE1-216ENST00000437340 POLA1P09884 1462 aaPredicted RBP40.6■■■■■ 4.09
CPNE1-216ENST00000437340 UBTFP17480 764 aaKnown RBP40.57■■■■■ 4.09
CPNE1-216ENST00000437340 THOC2Q8NI27 1593 aaKnown RBP40.55■■■■■ 4.08
CPNE1-216ENST00000437340 WDR62O43379 1518 aa40.53■■■■■ 4.08
CPNE1-216ENST00000437340 KIF27Q86VH2 1401 aa40.46■■■■■ 4.07
CPNE1-216ENST00000437340 RAD54L2Q9Y4B4 1467 aa40.46■■■■■ 4.07
CPNE1-216ENST00000437340 RAPGEF2Q9Y4G8 1499 aa40.39■■■■■ 4.06
CPNE1-216ENST00000437340 WDR97A6NE52 1622 aa40.39■■■■■ 4.06
CPNE1-216ENST00000437340 CUX2O14529 1486 aa40.37■■■■■ 4.05
CPNE1-216ENST00000437340 PRXQ9BXM0 1461 aa40.37■■■■■ 4.05
CPNE1-216ENST00000437340 ERICH3Q5RHP9 1530 aa40.37■■■■■ 4.05
CPNE1-216ENST00000437340 ABCA10Q8WWZ4 1543 aa40.36■■■■■ 4.05
CPNE1-216ENST00000437340 TARBP1Q13395 1621 aaKnown RBP40.3■■■■■ 4.04
CPNE1-216ENST00000437340 HRCP23327 699 aa40.25■■■■■ 4.03
CPNE1-216ENST00000437340 CLIP1P30622 1438 aa40.17■■■■■ 4.02
CPNE1-216ENST00000437340 ABCA5Q8WWZ7 1642 aa40.13■■■■■ 4.02
CPNE1-216ENST00000437340 IFT140Q96RY7 1462 aa40.11■■■■■ 4.01
CPNE1-216ENST00000437340 TDRD9Q8NDG6 1382 aaKnown RBP40.06■■■■■ 4
CPNE1-216ENST00000437340 IGF1RP08069 1367 aa40.04■■■■■ 4
CPNE1-216ENST00000437340 GAPVD1Q14C86 1478 aa39.99■■■■□ 3.99
CPNE1-216ENST00000437340 ZNF608Q9ULD9 1512 aaPredicted RBP39.94■■■■□ 3.98
CPNE1-216ENST00000437340 PPARGC1BQ86YN6 1023 aaKnown RBP39.93■■■■□ 3.98
CPNE1-216ENST00000437340 VPS8Q8N3P4 1428 aa39.93■■■■□ 3.98
CPNE1-216ENST00000437340 PBRM1Q86U86 1689 aa39.93■■■■□ 3.98
CPNE1-216ENST00000437340 AQRO60306 1485 aaKnown RBP eCLIP39.89■■■■□ 3.983e-7■■■■■ 27
CPNE1-216ENST00000437340 CUL7Q14999 1698 aa39.87■■■■□ 3.97
CPNE1-216ENST00000437340 EIF4G3O43432 1585 aaKnown RBP39.86■■■■□ 3.97
CPNE1-216ENST00000437340 CARMIL1Q5VZK9 1371 aa39.85■■■■□ 3.97
CPNE1-216ENST00000437340 GRIN2BQ13224 1484 aa39.73■■■■□ 3.95
CPNE1-216ENST00000437340 ARAP1Q96P48 1450 aa39.67■■■■□ 3.94
CPNE1-216ENST00000437340 RANGAP1P46060 587 aaPredicted RBP39.64■■■■□ 3.94
CPNE1-216ENST00000437340 ADAMTS12P58397 1594 aa39.63■■■■□ 3.94
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms