RNA–Protein interactions for RNA: ENST00000412056.5

CPNE1-206, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 998 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-206ENST00000412056 NISCHQ9Y2I1 1504 aa33.69■■■□□ 2.98
CPNE1-206ENST00000412056 CCDC180Q9P1Z9 1646 aa29.94■■■□□ 2.38
CPNE1-206ENST00000412056 ABCC9O60706 1549 aa29.06■■■□□ 2.24
CPNE1-206ENST00000412056 ZCCHC6Q5VYS8 1495 aaKnown RBP28.13■■■□□ 2.09
CPNE1-206ENST00000412056 RB1CC1Q8TDY2 1594 aa28.04■■■□□ 2.08
CPNE1-206ENST00000412056 NACADO15069 1562 aa28.03■■■□□ 2.08
CPNE1-206ENST00000412056 DCAF8L2P0C7V8 631 aa28■■■□□ 2.07
CPNE1-206ENST00000412056 MYO15BQ96JP2 1530 aa27.9■■■□□ 2.06
CPNE1-206ENST00000412056 DCAF1Q9Y4B6 1507 aa27.87■■■□□ 2.05
CPNE1-206ENST00000412056 UNC13AQ9UPW8 1703 aa27.55■■■□□ 2
CPNE1-206ENST00000412056 SCRIBQ14160 1630 aa27.34■■□□□ 1.97
CPNE1-206ENST00000412056 BICRAQ9NZM4 1560 aa27.22■■□□□ 1.95
CPNE1-206ENST00000412056 PABPN1Q86U42 306 aaKnown RBP eCLIP27.14■■□□□ 1.945e-6■■■■□ 22.2
CPNE1-206ENST00000412056 SHROOM4Q9ULL8 1493 aa26.87■■□□□ 1.89
CPNE1-206ENST00000412056 DNAJC5BQ9UF47 199 aa26.47■■□□□ 1.83
CPNE1-206ENST00000412056 EIF4G1Q04637 1599 aaKnown RBP26.46■■□□□ 1.83
CPNE1-206ENST00000412056 CC2D2AQ9P2K1 1620 aa26.33■■□□□ 1.81
CPNE1-206ENST00000412056 CECR2Q9BXF3 1484 aa26.24■■□□□ 1.79
CPNE1-206ENST00000412056 SMARCA4P51532 1647 aa26.15■■□□□ 1.78
CPNE1-206ENST00000412056 BAZ1AQ9NRL2 1556 aaPredicted RBP26.11■■□□□ 1.77
CPNE1-206ENST00000412056 MROH2BQ7Z745 1585 aa26■■□□□ 1.75
CPNE1-206ENST00000412056 ATAD2BQ9ULI0 1458 aa25.91■■□□□ 1.74
CPNE1-206ENST00000412056 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
CPNE1-206ENST00000412056 PEG3Q9GZU2 1588 aa25.86■■□□□ 1.73
CPNE1-206ENST00000412056 NCAPD3P42695 1498 aa25.84■■□□□ 1.73
CPNE1-206ENST00000412056 HMGXB3Q12766 1538 aa25.78■■□□□ 1.72
CPNE1-206ENST00000412056 WIZO95785 1651 aa25.77■■□□□ 1.72
CPNE1-206ENST00000412056 RSF1Q96T23 1441 aaPredicted RBP25.72■■□□□ 1.71
CPNE1-206ENST00000412056 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
CPNE1-206ENST00000412056 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
CPNE1-206ENST00000412056 NESP48681 1621 aa25.23■■□□□ 1.63
CPNE1-206ENST00000412056 SUPT5HO00267 1087 aaKnown RBP25.2■■□□□ 1.62
CPNE1-206ENST00000412056 LAMC3Q9Y6N6 1575 aa25.18■■□□□ 1.62
CPNE1-206ENST00000412056 CCDC88BA6NC98 1476 aa25.13■■□□□ 1.61
CPNE1-206ENST00000412056 CADPSQ9ULU8 1353 aa25.08■■□□□ 1.61
CPNE1-206ENST00000412056 ERCC6Q03468 1493 aa25.02■■□□□ 1.6
CPNE1-206ENST00000412056 KIF21AQ7Z4S6 1674 aa25.01■■□□□ 1.59
CPNE1-206ENST00000412056 CFTRP13569 1480 aa25■■□□□ 1.59
CPNE1-206ENST00000412056 PRDM2Q13029 1718 aa24.98■■□□□ 1.59
CPNE1-206ENST00000412056 PDS5BQ9NTI5 1447 aa24.94■■□□□ 1.58
CPNE1-206ENST00000412056 THOC2Q8NI27 1593 aaKnown RBP24.84■■□□□ 1.57
CPNE1-206ENST00000412056 FANCD2Q9BXW9 1451 aa24.84■■□□□ 1.57
CPNE1-206ENST00000412056 CEP164Q9UPV0 1460 aa24.79■■□□□ 1.56
CPNE1-206ENST00000412056 MRC2Q9UBG0 1479 aa24.72■■□□□ 1.55
CPNE1-206ENST00000412056 CUX2O14529 1486 aa24.68■■□□□ 1.54
CPNE1-206ENST00000412056 WDR62O43379 1518 aa24.66■■□□□ 1.54
CPNE1-206ENST00000412056 URB2Q14146 1524 aaKnown RBP24.61■■□□□ 1.53
CPNE1-206ENST00000412056 DNMBPQ6XZF7 1577 aa24.48■■□□□ 1.51
CPNE1-206ENST00000412056 TOPBP1Q92547 1522 aa24.48■■□□□ 1.51
CPNE1-206ENST00000412056 ABCC8Q09428 1581 aa24.43■■□□□ 1.5
CPNE1-206ENST00000412056 CUX1P39880 1505 aa24.39■■□□□ 1.49
CPNE1-206ENST00000412056 POLA1P09884 1462 aaPredicted RBP24.27■■□□□ 1.48
CPNE1-206ENST00000412056 FGD5Q6ZNL6 1462 aa24.26■■□□□ 1.47
CPNE1-206ENST00000412056 WRNQ14191 1432 aaPredicted RBP eCLIP24.26■■□□□ 1.47
CPNE1-206ENST00000412056 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
CPNE1-206ENST00000412056 BIVM-ERCC5R4GMW8 1640 aa24.25■■□□□ 1.47
CPNE1-206ENST00000412056 IFT140Q96RY7 1462 aa24.25■■□□□ 1.47
CPNE1-206ENST00000412056 TOP2BQ02880 1626 aa24.22■■□□□ 1.47
CPNE1-206ENST00000412056 TARBP1Q13395 1621 aaKnown RBP24.22■■□□□ 1.47
CPNE1-206ENST00000412056 RAD54L2Q9Y4B4 1467 aa24.18■■□□□ 1.46
CPNE1-206ENST00000412056 ZNF608Q9ULD9 1512 aaPredicted RBP24.15■■□□□ 1.46
CPNE1-206ENST00000412056 SOGA1O94964 1423 aa24.14■■□□□ 1.45
CPNE1-206ENST00000412056 WDR97A6NE52 1622 aa24.13■■□□□ 1.45
CPNE1-206ENST00000412056 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
CPNE1-206ENST00000412056 AQRO60306 1485 aaKnown RBP eCLIP24.01■■□□□ 1.433e-7■■■■□ 25.1
CPNE1-206ENST00000412056 ABCA10Q8WWZ4 1543 aa24.01■■□□□ 1.43
CPNE1-206ENST00000412056 TDRD9Q8NDG6 1382 aaKnown RBP23.99■■□□□ 1.43
CPNE1-206ENST00000412056 ABCA5Q8WWZ7 1642 aa23.95■■□□□ 1.43
CPNE1-206ENST00000412056 PBRM1Q86U86 1689 aa23.95■■□□□ 1.42
CPNE1-206ENST00000412056 GAPVD1Q14C86 1478 aa23.89■■□□□ 1.42
CPNE1-206ENST00000412056 GRIN2BQ13224 1484 aa23.86■■□□□ 1.41
CPNE1-206ENST00000412056 SNAPC4Q5SXM2 1469 aa23.83■■□□□ 1.41
CPNE1-206ENST00000412056 CHD1O14646 1710 aa23.83■■□□□ 1.41
CPNE1-206ENST00000412056 MAGI1Q96QZ7 1491 aaPredicted RBP23.78■■□□□ 1.4
CPNE1-206ENST00000412056 TRIM41Q8WV44 630 aa23.74■■□□□ 1.39
CPNE1-206ENST00000412056 ERICH3Q5RHP9 1530 aa23.73■■□□□ 1.39
CPNE1-206ENST00000412056 ADAMTS12P58397 1594 aa23.72■■□□□ 1.39
CPNE1-206ENST00000412056 KIF27Q86VH2 1401 aa23.71■■□□□ 1.39
CPNE1-206ENST00000412056 SYNJ2O15056 1496 aa23.68■■□□□ 1.38
CPNE1-206ENST00000412056 FBLN2P98095 1184 aa23.65■■□□□ 1.38
CPNE1-206ENST00000412056 DNAJC5Q9H3Z4 198 aa23.64■■□□□ 1.37
CPNE1-206ENST00000412056 CHIC1Q5VXU3 224 aa23.62■■□□□ 1.37
CPNE1-206ENST00000412056 OSCARQ8IYS5 282 aa23.62■■□□□ 1.37
CPNE1-206ENST00000412056 RUSC2Q8N2Y8 1516 aa23.61■■□□□ 1.37
CPNE1-206ENST00000412056 FHAD1B1AJZ9 1412 aa23.6■■□□□ 1.37
CPNE1-206ENST00000412056 CHMP7Q8WUX9 453 aaPredicted RBP23.6■■□□□ 1.37
CPNE1-206ENST00000412056 CUL7Q14999 1698 aa23.6■■□□□ 1.37
CPNE1-206ENST00000412056 IGF1RP08069 1367 aa23.57■■□□□ 1.36
CPNE1-206ENST00000412056 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
CPNE1-206ENST00000412056 CLASP1Q7Z460 1538 aa23.5■■□□□ 1.35
CPNE1-206ENST00000412056 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
CPNE1-206ENST00000412056 CARMIL1Q5VZK9 1371 aa23.45■■□□□ 1.34
CPNE1-206ENST00000412056 NUP160Q12769 1436 aa23.44■■□□□ 1.34
CPNE1-206ENST00000412056 EEA1Q15075 1411 aa23.37■■□□□ 1.33
CPNE1-206ENST00000412056 RIMBP3CA6NJZ7 1639 aa23.36■■□□□ 1.33
CPNE1-206ENST00000412056 RIMBP3BA6NNM3 1639 aa23.36■■□□□ 1.33
CPNE1-206ENST00000412056 RIMBP3Q9UFD9 1639 aa23.36■■□□□ 1.33
CPNE1-206ENST00000412056 RAPGEF2Q9Y4G8 1499 aa23.36■■□□□ 1.33
CPNE1-206ENST00000412056 ARHGEF11O15085 1522 aa23.33■■□□□ 1.33
CPNE1-206ENST00000412056 PRXQ9BXM0 1461 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms