RNA–Protein interactions for RNA: ENST00000368207.7

PTPRK-203, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5 BASIC

Gene PTPRK, Length 4,758 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-203ENST00000368207 DCAF8L2P0C7V8 631 aa22.06■■□□□ 1.12
PTPRK-203ENST00000368207 NISCHQ9Y2I1 1504 aa22.04■■□□□ 1.12
PTPRK-203ENST00000368207 SUPT5HO00267 1087 aaKnown RBP20.98■□□□□ 0.95
PTPRK-203ENST00000368207 SHROOM4Q9ULL8 1493 aa20.87■□□□□ 0.93
PTPRK-203ENST00000368207 EHMT2Q96KQ7 1210 aa20.13■□□□□ 0.81
PTPRK-203ENST00000368207 FAM9AQ8IZU1 332 aaPredicted RBP19.74■□□□□ 0.75
PTPRK-203ENST00000368207 TRIM41Q8WV44 630 aa19.39■□□□□ 0.7
PTPRK-203ENST00000368207 TTBK1Q5TCY1 1321 aaPredicted RBP19.39■□□□□ 0.69
PTPRK-203ENST00000368207 APLP2Q06481 763 aa19.38■□□□□ 0.69
PTPRK-203ENST00000368207 PCGF6Q9BYE7 350 aa19.32■□□□□ 0.68
PTPRK-203ENST00000368207 RANGAP1P46060 587 aaPredicted RBP19.27■□□□□ 0.68
PTPRK-203ENST00000368207 UBTFP17480 764 aaKnown RBP19.05■□□□□ 0.64
PTPRK-203ENST00000368207 ATP1B4Q9UN42 357 aaPredicted RBP18.94■□□□□ 0.62
PTPRK-203ENST00000368207 ABCC9O60706 1549 aa18.92■□□□□ 0.62
PTPRK-203ENST00000368207 PPARGC1BQ86YN6 1023 aaKnown RBP18.88■□□□□ 0.61
PTPRK-203ENST00000368207 CHIC1Q5VXU3 224 aa18.87■□□□□ 0.61
PTPRK-203ENST00000368207 CCER1Q8TC90 406 aaPredicted RBP18.82■□□□□ 0.6
PTPRK-203ENST00000368207 LOC105371045A0A1W2PR82 267 aa18.81■□□□□ 0.6
PTPRK-203ENST00000368207 PABPN1Q86U42 306 aaKnown RBP eCLIP18.73■□□□□ 0.59
PTPRK-203ENST00000368207 ZEB1P37275 1124 aaPredicted RBP18.65■□□□□ 0.58
PTPRK-203ENST00000368207 TRIM26Q12899 539 aaPredicted RBP18.54■□□□□ 0.56
PTPRK-203ENST00000368207 PELP1Q8IZL8 1130 aaKnown RBP18.45■□□□□ 0.54
PTPRK-203ENST00000368207 ITGAEP38570 1179 aa18.41■□□□□ 0.54
PTPRK-203ENST00000368207 CCDC180Q9P1Z9 1646 aa18.37■□□□□ 0.53
PTPRK-203ENST00000368207 CENPBP07199 599 aaPredicted RBP18.32■□□□□ 0.52
PTPRK-203ENST00000368207 HNRNPUL2Q1KMD3 747 aaKnown RBP18.32■□□□□ 0.52
PTPRK-203ENST00000368207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.31■□□□□ 0.52
PTPRK-203ENST00000368207 HRCP23327 699 aa18.3■□□□□ 0.52
PTPRK-203ENST00000368207 ZCCHC6Q5VYS8 1495 aaKnown RBP18.26■□□□□ 0.51
PTPRK-203ENST00000368207 YTHDC1Q96MU7 727 aaKnown RBP18.23■□□□□ 0.51
PTPRK-203ENST00000368207 SCRIBQ14160 1630 aa18.15■□□□□ 0.5
PTPRK-203ENST00000368207 MYT1LQ9UL68 1186 aa18.05■□□□□ 0.48
PTPRK-203ENST00000368207 FAM50AQ14320 339 aaKnown RBP17.96■□□□□ 0.47
PTPRK-203ENST00000368207 POLR3GLQ9BT43 218 aa17.94■□□□□ 0.46
PTPRK-203ENST00000368207 CSRNP3Q8WYN3 585 aa17.94■□□□□ 0.46
PTPRK-203ENST00000368207 NEFLP07196 543 aa17.89■□□□□ 0.45
PTPRK-203ENST00000368207 FBLN2P98095 1184 aa17.87■□□□□ 0.45
PTPRK-203ENST00000368207 CNGB1Q14028 1251 aaPredicted RBP17.86■□□□□ 0.45
PTPRK-203ENST00000368207 P3H3Q8IVL6 736 aa17.84■□□□□ 0.45
PTPRK-203ENST00000368207 RB1CC1Q8TDY2 1594 aa17.81■□□□□ 0.44
PTPRK-203ENST00000368207 TRIM52Q96A61 297 aa17.75■□□□□ 0.43
PTPRK-203ENST00000368207 ARID3CA6NKF2 412 aa17.74■□□□□ 0.43
PTPRK-203ENST00000368207 NEUROD1Q13562 356 aa17.74■□□□□ 0.43
PTPRK-203ENST00000368207 DIEXFQ68CQ4 756 aaKnown RBP17.73■□□□□ 0.43
PTPRK-203ENST00000368207 ERICH6Q7L0X2 663 aa17.71■□□□□ 0.43
PTPRK-203ENST00000368207 NACADO15069 1562 aa17.69■□□□□ 0.42
PTPRK-203ENST00000368207 RSF1Q96T23 1441 aaPredicted RBP17.65■□□□□ 0.42
PTPRK-203ENST00000368207 ZNF326Q5BKZ1 582 aaKnown RBP17.53■□□□□ 0.4
PTPRK-203ENST00000368207 SLC4A1APQ9BWU0 796 aaKnown RBP17.52■□□□□ 0.39
PTPRK-203ENST00000368207 ZNF777Q9ULD5 760 aaPredicted RBP17.47■□□□□ 0.39
PTPRK-203ENST00000368207 MYO15BQ96JP2 1530 aa17.47■□□□□ 0.39
PTPRK-203ENST00000368207 DCAF1Q9Y4B6 1507 aa17.44■□□□□ 0.38
PTPRK-203ENST00000368207 ZNF316A6NFI3 1004 aaPredicted RBP17.42■□□□□ 0.38
PTPRK-203ENST00000368207 CECR2Q9BXF3 1484 aa17.41■□□□□ 0.38
PTPRK-203ENST00000368207 CDK11AQ9UQ88 783 aaPredicted RBP17.37■□□□□ 0.37
PTPRK-203ENST00000368207 BAZ1BQ9UIG0 1483 aaKnown RBP17.33■□□□□ 0.36
PTPRK-203ENST00000368207 ANP32CO43423 234 aa17.31■□□□□ 0.36
PTPRK-203ENST00000368207 CLIP1P30622 1438 aa17.3■□□□□ 0.36
PTPRK-203ENST00000368207 WRNQ14191 1432 aaPredicted RBP eCLIP17.3■□□□□ 0.36
PTPRK-203ENST00000368207 CHIC2Q9UKJ5 165 aa17.26■□□□□ 0.35
PTPRK-203ENST00000368207 BAZ1AQ9NRL2 1556 aaPredicted RBP17.25■□□□□ 0.35
PTPRK-203ENST00000368207 GTF3C3Q9Y5Q9 886 aa17.23■□□□□ 0.35
PTPRK-203ENST00000368207 CHMP7Q8WUX9 453 aaPredicted RBP17.21■□□□□ 0.35
PTPRK-203ENST00000368207 BCANQ96GW7 911 aa17.21■□□□□ 0.35
PTPRK-203ENST00000368207 CEP162Q5TB80 1403 aa17.21■□□□□ 0.35
PTPRK-203ENST00000368207 EEA1Q15075 1411 aa17.19■□□□□ 0.34
PTPRK-203ENST00000368207 GOLGA3Q08378 1498 aa17.17■□□□□ 0.34
PTPRK-203ENST00000368207 MTUS2Q5JR59 1369 aa17.17■□□□□ 0.34
PTPRK-203ENST00000368207 TONSLQ96HA7 1378 aa17.16■□□□□ 0.34
PTPRK-203ENST00000368207 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
PTPRK-203ENST00000368207 DAXXQ9UER7 740 aaPredicted RBP17.15■□□□□ 0.34
PTPRK-203ENST00000368207 KIF27Q86VH2 1401 aa17.1■□□□□ 0.33
PTPRK-203ENST00000368207 NPM1P06748 294 aaKnown RBP eCLIP17.08■□□□□ 0.32
PTPRK-203ENST00000368207 DDX10Q13206 875 aaKnown RBP17.07■□□□□ 0.32
PTPRK-203ENST00000368207 TNIKQ9UKE5 1360 aa17.07■□□□□ 0.32
PTPRK-203ENST00000368207 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.07■□□□□ 0.325e-7■■□□□ 13.3
PTPRK-203ENST00000368207 CHGAP10645 457 aaKnown RBP17.05■□□□□ 0.32
PTPRK-203ENST00000368207 CLSPNQ9HAW4 1339 aa17.05■□□□□ 0.32
PTPRK-203ENST00000368207 SOGA1O94964 1423 aa17.05■□□□□ 0.32
PTPRK-203ENST00000368207 TSPY4P0CV99 314 aa17.04■□□□□ 0.32
PTPRK-203ENST00000368207 TSPY10P0CW01 314 aa17.04■□□□□ 0.32
PTPRK-203ENST00000368207 ACIN1Q9UKV3 1341 aaKnown RBP17.04■□□□□ 0.32
PTPRK-203ENST00000368207 CEP164Q9UPV0 1460 aa17.03■□□□□ 0.32
PTPRK-203ENST00000368207 RRP7BPQ9NSQ0 103 aa17.03■□□□□ 0.32
PTPRK-203ENST00000368207 CCDC88BA6NC98 1476 aa17.01■□□□□ 0.31
PTPRK-203ENST00000368207 HIRIP3Q9BW71 556 aaPredicted RBP16.99■□□□□ 0.31
PTPRK-203ENST00000368207 KCNH8Q96L42 1107 aa16.97■□□□□ 0.31
PTPRK-203ENST00000368207 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
PTPRK-203ENST00000368207 KDM2AQ9Y2K7 1162 aa16.95■□□□□ 0.3
PTPRK-203ENST00000368207 ESF1Q9H501 851 aaKnown RBP16.93■□□□□ 0.3
PTPRK-203ENST00000368207 PLPPR3Q6T4P5 718 aa16.93■□□□□ 0.3
PTPRK-203ENST00000368207 PLEKHD1A6NEE1 506 aa16.92■□□□□ 0.3
PTPRK-203ENST00000368207 CUX2O14529 1486 aa16.91■□□□□ 0.3
PTPRK-203ENST00000368207 STAG3Q9UJ98 1225 aa16.9■□□□□ 0.3
PTPRK-203ENST00000368207 FAM9BQ8IZU0 186 aa16.88■□□□□ 0.29
PTPRK-203ENST00000368207 CARMIL1Q5VZK9 1371 aa16.88■□□□□ 0.29
PTPRK-203ENST00000368207 WIZO95785 1651 aa16.88■□□□□ 0.29
PTPRK-203ENST00000368207 HNRNPUQ00839 825 aaKnown RBP eCLIP16.88■□□□□ 0.29
PTPRK-203ENST00000368207 ERCC6Q03468 1493 aa16.87■□□□□ 0.29
PTPRK-203ENST00000368207 MIER1Q8N108 512 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms