RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 NISCHQ9Y2I1 1504 aa53.95■■■■■ 6.23
CPNE1-220ENST00000458038 CCDC180Q9P1Z9 1646 aa48.48■■■■■ 5.35
CPNE1-220ENST00000458038 ABCC9O60706 1549 aa48.4■■■■■ 5.34
CPNE1-220ENST00000458038 RB1CC1Q8TDY2 1594 aa46.17■■■■■ 4.98
CPNE1-220ENST00000458038 NACADO15069 1562 aa45.87■■■■■ 4.93
CPNE1-220ENST00000458038 DCAF8L2P0C7V8 631 aa45.52■■■■■ 4.88
CPNE1-220ENST00000458038 DNAJC5BQ9UF47 199 aa45.42■■■■■ 4.86
CPNE1-220ENST00000458038 MYO15BQ96JP2 1530 aa45.27■■■■■ 4.84
CPNE1-220ENST00000458038 PABPN1Q86U42 306 aaKnown RBP eCLIP45.04■■■■■ 4.8
CPNE1-220ENST00000458038 UNC13AQ9UPW8 1703 aa45.04■■■■■ 4.8
CPNE1-220ENST00000458038 BICRAQ9NZM4 1560 aa44.73■■■■■ 4.75
CPNE1-220ENST00000458038 ZCCHC6Q5VYS8 1495 aaKnown RBP44.68■■■■■ 4.74
CPNE1-220ENST00000458038 DCAF1Q9Y4B6 1507 aa44.65■■■■■ 4.74
CPNE1-220ENST00000458038 SHROOM4Q9ULL8 1493 aa44.3■■■■■ 4.68
CPNE1-220ENST00000458038 SCRIBQ14160 1630 aa44.04■■■■■ 4.64
CPNE1-220ENST00000458038 CC2D2AQ9P2K1 1620 aa43.76■■■■■ 4.6
CPNE1-220ENST00000458038 EIF4G1Q04637 1599 aaKnown RBP43.67■■■■■ 4.58
CPNE1-220ENST00000458038 CECR2Q9BXF3 1484 aa43.65■■■■■ 4.58
CPNE1-220ENST00000458038 NCAPD3P42695 1498 aa42.33■■■■■ 4.37
CPNE1-220ENST00000458038 ATAD2BQ9ULI0 1458 aa42.15■■■■■ 4.34
CPNE1-220ENST00000458038 SMARCA2P51531 1590 aa42.09■■■■■ 4.33
CPNE1-220ENST00000458038 SMARCA4P51532 1647 aa42.07■■■■■ 4.33
CPNE1-220ENST00000458038 HMGXB3Q12766 1538 aa42■■■■■ 4.31
CPNE1-220ENST00000458038 BAZ1AQ9NRL2 1556 aaPredicted RBP41.91■■■■■ 4.3
CPNE1-220ENST00000458038 DNAJC5Q9H3Z4 198 aa41.87■■■■■ 4.29
CPNE1-220ENST00000458038 ERCC6Q03468 1493 aa41.86■■■■■ 4.29
CPNE1-220ENST00000458038 CUX2O14529 1486 aa41.85■■■■■ 4.29
CPNE1-220ENST00000458038 BAZ1BQ9UIG0 1483 aaKnown RBP41.74■■■■■ 4.27
CPNE1-220ENST00000458038 PEG3Q9GZU2 1588 aa41.73■■■■■ 4.27
CPNE1-220ENST00000458038 NESP48681 1621 aa41.54■■■■■ 4.24
CPNE1-220ENST00000458038 MROH2BQ7Z745 1585 aa41.5■■■■■ 4.23
CPNE1-220ENST00000458038 LAMC3Q9Y6N6 1575 aa41.38■■■■■ 4.22
CPNE1-220ENST00000458038 PDS5BQ9NTI5 1447 aa41.18■■■■■ 4.18
CPNE1-220ENST00000458038 THOC2Q8NI27 1593 aaKnown RBP41.16■■■■■ 4.18
CPNE1-220ENST00000458038 KIF21AQ7Z4S6 1674 aa41.04■■■■■ 4.16
CPNE1-220ENST00000458038 CADPSQ9ULU8 1353 aa41.03■■■■■ 4.16
CPNE1-220ENST00000458038 WIZO95785 1651 aa41■■■■■ 4.15
CPNE1-220ENST00000458038 MRC2Q9UBG0 1479 aa40.75■■■■■ 4.11
CPNE1-220ENST00000458038 RSF1Q96T23 1441 aaPredicted RBP40.67■■■■■ 4.1
CPNE1-220ENST00000458038 WDR62O43379 1518 aa40.64■■■■■ 4.1
CPNE1-220ENST00000458038 CEP164Q9UPV0 1460 aa40.59■■■■■ 4.09
CPNE1-220ENST00000458038 CFTRP13569 1480 aa40.54■■■■■ 4.08
CPNE1-220ENST00000458038 TOP2AP11388 1531 aaKnown RBP40.53■■■■■ 4.08
CPNE1-220ENST00000458038 FANCD2Q9BXW9 1451 aa40.52■■■■■ 4.08
CPNE1-220ENST00000458038 URB2Q14146 1524 aaKnown RBP40.16■■■■■ 4.02
CPNE1-220ENST00000458038 PRDM2Q13029 1718 aa40.15■■■■■ 4.02
CPNE1-220ENST00000458038 CCDC88BA6NC98 1476 aa40.07■■■■■ 4
CPNE1-220ENST00000458038 OSCARQ8IYS5 282 aa39.96■■■■□ 3.99
CPNE1-220ENST00000458038 TRIM41Q8WV44 630 aa39.92■■■■□ 3.98
CPNE1-220ENST00000458038 IFT140Q96RY7 1462 aa39.81■■■■□ 3.96
CPNE1-220ENST00000458038 ABCC8Q09428 1581 aa39.8■■■■□ 3.96
CPNE1-220ENST00000458038 TOPBP1Q92547 1522 aa39.75■■■■□ 3.95
CPNE1-220ENST00000458038 ZNF608Q9ULD9 1512 aaPredicted RBP39.64■■■■□ 3.94
CPNE1-220ENST00000458038 DNMBPQ6XZF7 1577 aa39.62■■■■□ 3.93
CPNE1-220ENST00000458038 EIF4G3O43432 1585 aaKnown RBP39.44■■■■□ 3.9
CPNE1-220ENST00000458038 TARBP1Q13395 1621 aaKnown RBP39.4■■■■□ 3.9
CPNE1-220ENST00000458038 RIMBP3CA6NJZ7 1639 aa39.33■■■■□ 3.89
CPNE1-220ENST00000458038 RIMBP3BA6NNM3 1639 aa39.33■■■■□ 3.89
CPNE1-220ENST00000458038 RIMBP3Q9UFD9 1639 aa39.33■■■■□ 3.89
CPNE1-220ENST00000458038 POLA1P09884 1462 aaPredicted RBP39.32■■■■□ 3.89
CPNE1-220ENST00000458038 AQRO60306 1485 aaKnown RBP eCLIP39.3■■■■□ 3.887e-7■■■■□ 21.9
CPNE1-220ENST00000458038 ARHGEF11O15085 1522 aa39.22■■■■□ 3.87
CPNE1-220ENST00000458038 SOGA1O94964 1423 aa39.19■■■■□ 3.86
CPNE1-220ENST00000458038 CHD1O14646 1710 aa39.16■■■■□ 3.86
CPNE1-220ENST00000458038 RAD54L2Q9Y4B4 1467 aa39.13■■■■□ 3.85
CPNE1-220ENST00000458038 WDR97A6NE52 1622 aa39.11■■■■□ 3.85
CPNE1-220ENST00000458038 FBLN2P98095 1184 aa39.09■■■■□ 3.85
CPNE1-220ENST00000458038 TDRD9Q8NDG6 1382 aaKnown RBP39.07■■■■□ 3.84
CPNE1-220ENST00000458038 FGD5Q6ZNL6 1462 aa39.06■■■■□ 3.84
CPNE1-220ENST00000458038 CUX1P39880 1505 aa39.01■■■■□ 3.84
CPNE1-220ENST00000458038 CYB5RLQ6IPT4 315 aa38.96■■■■□ 3.83
CPNE1-220ENST00000458038 SNAPC4Q5SXM2 1469 aa38.9■■■■□ 3.82
CPNE1-220ENST00000458038 MAGI1Q96QZ7 1491 aaPredicted RBP38.89■■■■□ 3.82
CPNE1-220ENST00000458038 GRIN2BQ13224 1484 aa38.86■■■■□ 3.81
CPNE1-220ENST00000458038 CHMP7Q8WUX9 453 aaPredicted RBP38.85■■■■□ 3.81
CPNE1-220ENST00000458038 SUPT5HO00267 1087 aaKnown RBP38.81■■■■□ 3.8
CPNE1-220ENST00000458038 ARAP1Q96P48 1450 aa38.8■■■■□ 3.8
CPNE1-220ENST00000458038 SYNJ1O43426 1573 aa38.75■■■■□ 3.79
CPNE1-220ENST00000458038 SYNJ2O15056 1496 aa38.74■■■■□ 3.79
CPNE1-220ENST00000458038 CLASP1Q7Z460 1538 aa38.73■■■■□ 3.79
CPNE1-220ENST00000458038 GAPVD1Q14C86 1478 aa38.71■■■■□ 3.79
CPNE1-220ENST00000458038 ABCA10Q8WWZ4 1543 aa38.68■■■■□ 3.78
CPNE1-220ENST00000458038 PBRM1Q86U86 1689 aa38.65■■■■□ 3.78
CPNE1-220ENST00000458038 ABCA5Q8WWZ7 1642 aa38.57■■■■□ 3.77
CPNE1-220ENST00000458038 WRNQ14191 1432 aaPredicted RBP eCLIP38.55■■■■□ 3.76
CPNE1-220ENST00000458038 TRHP20396 242 aaPredicted RBP38.54■■■■□ 3.76
CPNE1-220ENST00000458038 TOP2BQ02880 1626 aa38.43■■■■□ 3.74
CPNE1-220ENST00000458038 BIVM-ERCC5R4GMW8 1640 aa38.42■■■■□ 3.74
CPNE1-220ENST00000458038 GRIN2AQ12879 1464 aa38.34■■■■□ 3.73
CPNE1-220ENST00000458038 ADAMTS12P58397 1594 aa38.27■■■■□ 3.72
CPNE1-220ENST00000458038 FHAD1B1AJZ9 1412 aa38.24■■■■□ 3.71
CPNE1-220ENST00000458038 NUP160Q12769 1436 aa38.22■■■■□ 3.71
CPNE1-220ENST00000458038 ERICH3Q5RHP9 1530 aa38.22■■■■□ 3.71
CPNE1-220ENST00000458038 CEP170Q5SW79 1584 aa38.14■■■■□ 3.7
CPNE1-220ENST00000458038 SHROOM2Q13796 1616 aa38.05■■■■□ 3.68
CPNE1-220ENST00000458038 ERCC6L2Q5T890 1561 aa38.03■■■■□ 3.68
CPNE1-220ENST00000458038 JPH4Q96JJ6 628 aa37.87■■■■□ 3.65
CPNE1-220ENST00000458038 PRG4Q92954 1404 aaPredicted RBP37.85■■■■□ 3.65
CPNE1-220ENST00000458038 RUSC2Q8N2Y8 1516 aa37.72■■■■□ 3.63
CPNE1-220ENST00000458038 KIF27Q86VH2 1401 aa37.71■■■■□ 3.63
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms