Protein–RNA interactions for Protein: Q9Y606

PUS1, tRNA pseudouridine synthase A, humanhuman

Known RBP eCLIP

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PUS1Q9Y606 HFM1-207ENST00000481900 2020 ntTSL 52.19□□□□□ -2.068e-13■■■□□ 17.8
PUS1Q9Y606 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.218e-13■■■□□ 17.8
PUS1Q9Y606 HFM1-202ENST00000427444 672 ntTSL 51.01□□□□□ -2.258e-13■■■□□ 17.8
PUS1Q9Y606 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC12.76□□□□□ -0.375e-7■■■□□ 17
PUS1Q9Y606 C22orf34-205ENST00000416411 542 ntTSL 410.52□□□□□ -0.735e-7■■■□□ 17
PUS1Q9Y606 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.016e-6■■■□□ 16.6
PUS1Q9Y606 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC11.47□□□□□ -0.576e-6■■■□□ 16.6
PUS1Q9Y606 EIF1AX-202ENST00000379607 4427 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.996e-6■■■□□ 16.6
PUS1Q9Y606 snoU2-30.1-201ENST00000365012 70 ntBASIC0.09□□□□□ -2.46e-6■■■□□ 16.6
PUS1Q9Y606 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.96□□□□□ -0.175e-6■■■□□ 15.6
PUS1Q9Y606 CTTN-204ENST00000393747 1315 ntTSL 513.24□□□□□ -0.295e-6■■■□□ 15.6
PUS1Q9Y606 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.475e-6■■■□□ 15.6
PUS1Q9Y606 CTTN-213ENST00000529736 952 ntTSL 312.04□□□□□ -0.485e-6■■■□□ 15.6
PUS1Q9Y606 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.525e-6■■■□□ 15.6
PUS1Q9Y606 MT-TF-201ENST00000387314 71 ntBASIC-0.2□□□□□ -2.441e-323■■■□□ 14.8
PUS1Q9Y606 RNU6-9-201ENST00000384776 107 ntBASIC0.88□□□□□ -2.274e-13■■■□□ 14.7
PUS1Q9Y606 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.073e-7■■□□□ 13.3
PUS1Q9Y606 ILF3-221ENST00000591649 2579 ntTSL 212.71□□□□□ -0.383e-7■■□□□ 13.3
PUS1Q9Y606 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.653e-7■■□□□ 13.3
PUS1Q9Y606 ILF3-208ENST00000587928 4230 ntTSL 29.63□□□□□ -0.873e-7■■□□□ 13.3
PUS1Q9Y606 ILF3-205ENST00000586544 3859 ntTSL 1 (best)9.32□□□□□ -0.923e-7■■□□□ 13.3
PUS1Q9Y606 RPS7-205ENST00000462576 907 ntTSL 1 (best)19.27■□□□□ 0.682e-7■■□□□ 12.6
PUS1Q9Y606 RPS7-209ENST00000491937 987 ntTSL 219.27■□□□□ 0.682e-7■■□□□ 12.6
PUS1Q9Y606 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.772e-7■■□□□ 12.6
PUS1Q9Y606 RPS7-204ENST00000407445 833 ntTSL 2 BASIC7.07□□□□□ -1.282e-7■■□□□ 12.6
PUS1Q9Y606 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.552e-7■■□□□ 12.6
PUS1Q9Y606 SEC31A-223ENST00000507816 546 ntTSL 414.32□□□□□ -0.125e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.55e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC11.79□□□□□ -0.525e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.585e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-206ENST00000436790 1717 ntTSL 1 (best)11.35□□□□□ -0.595e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-228ENST00000509142 3861 ntAPPRIS ALT2 TSL 5 BASIC9.27□□□□□ -0.935e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-227ENST00000508502 3801 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.085e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC5.26□□□□□ -1.575e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-210ENST00000503058 706 ntTSL 55.14□□□□□ -1.595e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.12□□□□□ -1.595e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.36□□□□□ -1.715e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.34□□□□□ -1.725e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.22□□□□□ -1.735e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.95□□□□□ -1.785e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.835e-6■■□□□ 12.4
PUS1Q9Y606 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.59□□□□□ -1.845e-6■■□□□ 12.4
PUS1Q9Y606 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.36□□□□□ -1.875e-14■■□□□ 12
PUS1Q9Y606 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.413e-6■■□□□ 11.9
PUS1Q9Y606 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC17.19■□□□□ 0.343e-6■■□□□ 11.9
PUS1Q9Y606 SNRNP70-204ENST00000595231 1673 ntTSL 1 (best)17.18■□□□□ 0.343e-6■■□□□ 11.9
PUS1Q9Y606 SNRNP70-209ENST00000601065 1757 ntTSL 316.97■□□□□ 0.313e-6■■□□□ 11.9
PUS1Q9Y606 SNRNP70-202ENST00000401730 3144 ntTSL 214.71□□□□□ -0.053e-6■■□□□ 11.9
PUS1Q9Y606 SNRNP70-203ENST00000544278 3221 ntTSL 1 (best)13.36□□□□□ -0.273e-6■■□□□ 11.9
PUS1Q9Y606 RPS7-208ENST00000481006 5429 ntTSL 1 (best)14.32□□□□□ -0.123e-7■□□□□ 11.1
PUS1Q9Y606 RPS7-203ENST00000406376 704 ntAPPRIS P1 TSL 3 BASIC8.37□□□□□ -1.073e-7■□□□□ 11.1
PUS1Q9Y606 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC5.68□□□□□ -1.52e-31■□□□□ 11.1
PUS1Q9Y606 NEAT1-202ENST00000501122 22743 ntBASIC4.64□□□□□ -1.671e-9■□□□□ 10.7
PUS1Q9Y606 HIST1H4C-201ENST00000377803 435 ntAPPRIS P1 BASIC8.95□□□□□ -0.985e-7■□□□□ 10.6
PUS1Q9Y606 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.462e-8■□□□□ 10.2
PUS1Q9Y606 DGCR8-204ENST00000457069 770 ntTSL 312.09□□□□□ -0.472e-8■□□□□ 10.2
PUS1Q9Y606 DGCR8-202ENST00000383024 4419 ntTSL 5 BASIC10.44□□□□□ -0.742e-8■□□□□ 10.2
PUS1Q9Y606 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.16e-7■□□□□ 9.9
PUS1Q9Y606 FAM178B-205ENST00000494172 592 ntTSL 313.53□□□□□ -0.246e-7■□□□□ 9.9
PUS1Q9Y606 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC9.74□□□□□ -0.856e-7■□□□□ 9.9
PUS1Q9Y606 FAM178B-202ENST00000470789 722 ntTSL 1 (best)8.66□□□□□ -1.026e-7■□□□□ 9.9
PUS1Q9Y606 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.59□□□□□ -2.151e-22■□□□□ 9.8
PUS1Q9Y606 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.743e-6■□□□□ 9.1
PUS1Q9Y606 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.13e-6■□□□□ 9.1
PUS1Q9Y606 DHFR-205ENST00000511032 1474 ntTSL 2 BASIC8.31□□□□□ -1.083e-6■□□□□ 9.1
PUS1Q9Y606 DHFR-206ENST00000513048 994 ntTSL 1 (best)7.19□□□□□ -1.263e-6■□□□□ 9.1
PUS1Q9Y606 DHFR-202ENST00000504396 1447 ntTSL 2 BASIC6.54□□□□□ -1.363e-6■□□□□ 9.1
PUS1Q9Y606 DHFR-204ENST00000508282 545 ntTSL 32.76□□□□□ -1.973e-6■□□□□ 9.1
PUS1Q9Y606 DHFR-207ENST00000513314 582 ntTSL 31.36□□□□□ -2.193e-6■□□□□ 9.1
PUS1Q9Y606 ACTB-211ENST00000480301 657 ntTSL 1 (best)15.73■□□□□ 0.113e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-210ENST00000477812 820 ntTSL 215.19■□□□□ 0.023e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-212ENST00000484841 1032 ntTSL 514.88□□□□□ -0.033e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-207ENST00000462494 2245 ntTSL 514.39□□□□□ -0.113e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.123e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-205ENST00000432588 568 ntTSL 411.9□□□□□ -0.53e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-204ENST00000425660 1845 ntTSL 1 (best)11.86□□□□□ -0.513e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-206ENST00000443528 569 ntTSL 411.82□□□□□ -0.523e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-202ENST00000414620 561 ntTSL 411.48□□□□□ -0.573e-13■□□□□ 8.3
PUS1Q9Y606 ACTB-209ENST00000473257 556 ntTSL 38.14□□□□□ -1.113e-13■□□□□ 8.3
PUS1Q9Y606 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.99□□□□□ -1.771e-323■□□□□ 8.2
Retrieved 80 of 280 protein–RNA pairs in 12.3 ms