RNA–Protein interactions for RNA: ENST00000509142.5

SEC31A-228, Transcript of SEC31 homolog A, COPII coat complex component, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SEC31A, Length 3,861 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC31A-228ENST00000509142 NISCHQ9Y2I1 1504 aa22.89■■□□□ 1.25
SEC31A-228ENST00000509142 SHROOM4Q9ULL8 1493 aa19.51■□□□□ 0.71
SEC31A-228ENST00000509142 CCDC180Q9P1Z9 1646 aa19.49■□□□□ 0.71
SEC31A-228ENST00000509142 DCAF8L2P0C7V8 631 aa19.31■□□□□ 0.68
SEC31A-228ENST00000509142 ZCCHC6Q5VYS8 1495 aaKnown RBP19.29■□□□□ 0.68
SEC31A-228ENST00000509142 SUPT5HO00267 1087 aaKnown RBP19.12■□□□□ 0.65
SEC31A-228ENST00000509142 DCAF1Q9Y4B6 1507 aa18.75■□□□□ 0.59
SEC31A-228ENST00000509142 MYO15BQ96JP2 1530 aa18.49■□□□□ 0.55
SEC31A-228ENST00000509142 CHIC1Q5VXU3 224 aa18.42■□□□□ 0.54
SEC31A-228ENST00000509142 ABCC9O60706 1549 aa18.35■□□□□ 0.53
SEC31A-228ENST00000509142 SCRIBQ14160 1630 aa18.3■□□□□ 0.52
SEC31A-228ENST00000509142 NACADO15069 1562 aa18.14■□□□□ 0.49
SEC31A-228ENST00000509142 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
SEC31A-228ENST00000509142 HRCP23327 699 aa17.99■□□□□ 0.47
SEC31A-228ENST00000509142 LOC105371045A0A1W2PR82 267 aa17.94■□□□□ 0.46
SEC31A-228ENST00000509142 PCGF6Q9BYE7 350 aa17.93■□□□□ 0.46
SEC31A-228ENST00000509142 RB1CC1Q8TDY2 1594 aa17.9■□□□□ 0.46
SEC31A-228ENST00000509142 CECR2Q9BXF3 1484 aa17.86■□□□□ 0.45
SEC31A-228ENST00000509142 TRIM41Q8WV44 630 aa17.83■□□□□ 0.45
SEC31A-228ENST00000509142 MROH2BQ7Z745 1585 aa17.77■□□□□ 0.44
SEC31A-228ENST00000509142 PPARGC1BQ86YN6 1023 aaKnown RBP17.74■□□□□ 0.43
SEC31A-228ENST00000509142 FAM9AQ8IZU1 332 aaPredicted RBP17.69■□□□□ 0.42
SEC31A-228ENST00000509142 WIZO95785 1651 aa17.64■□□□□ 0.42
SEC31A-228ENST00000509142 BAZ1AQ9NRL2 1556 aaPredicted RBP17.62■□□□□ 0.41
SEC31A-228ENST00000509142 PABPN1Q86U42 306 aaKnown RBP eCLIP17.57■□□□□ 0.42e-7■■■■□ 22
SEC31A-228ENST00000509142 EHMT2Q96KQ7 1210 aa17.56■□□□□ 0.4
SEC31A-228ENST00000509142 TRIM26Q12899 539 aaPredicted RBP17.49■□□□□ 0.39
SEC31A-228ENST00000509142 UNC13AQ9UPW8 1703 aa17.45■□□□□ 0.38
SEC31A-228ENST00000509142 SMARCA4P51532 1647 aa17.44■□□□□ 0.38
SEC31A-228ENST00000509142 TOP2AP11388 1531 aaKnown RBP17.4■□□□□ 0.38
SEC31A-228ENST00000509142 CCDC88BA6NC98 1476 aa17.34■□□□□ 0.37
SEC31A-228ENST00000509142 BICRAQ9NZM4 1560 aa17.3■□□□□ 0.36
SEC31A-228ENST00000509142 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
SEC31A-228ENST00000509142 EIF4G1Q04637 1599 aaKnown RBP17.23■□□□□ 0.35
SEC31A-228ENST00000509142 ABCC8Q09428 1581 aa17.22■□□□□ 0.35
SEC31A-228ENST00000509142 ATAD2BQ9ULI0 1458 aa17.09■□□□□ 0.33
SEC31A-228ENST00000509142 BAZ1BQ9UIG0 1483 aaKnown RBP17.09■□□□□ 0.33
SEC31A-228ENST00000509142 PEG3Q9GZU2 1588 aa17.07■□□□□ 0.32
SEC31A-228ENST00000509142 UBTFP17480 764 aaKnown RBP17.06■□□□□ 0.32
SEC31A-228ENST00000509142 SOGA1O94964 1423 aa17.06■□□□□ 0.32
SEC31A-228ENST00000509142 CSRNP3Q8WYN3 585 aa17.06■□□□□ 0.32
SEC31A-228ENST00000509142 WRNQ14191 1432 aaPredicted RBP eCLIP17.03■□□□□ 0.32
SEC31A-228ENST00000509142 ZEB1P37275 1124 aaPredicted RBP17.03■□□□□ 0.32
SEC31A-228ENST00000509142 EEA1Q15075 1411 aa17■□□□□ 0.31
SEC31A-228ENST00000509142 RUSC2Q8N2Y8 1516 aa16.95■□□□□ 0.3
SEC31A-228ENST00000509142 TTBK1Q5TCY1 1321 aaPredicted RBP16.95■□□□□ 0.3
SEC31A-228ENST00000509142 CEP162Q5TB80 1403 aa16.92■□□□□ 0.3
SEC31A-228ENST00000509142 TNIKQ9UKE5 1360 aa16.92■□□□□ 0.3
SEC31A-228ENST00000509142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.87■□□□□ 0.29
SEC31A-228ENST00000509142 GOLGA3Q08378 1498 aa16.86■□□□□ 0.29
SEC31A-228ENST00000509142 SYNJ1O43426 1573 aa16.84■□□□□ 0.29
SEC31A-228ENST00000509142 NCAPD3P42695 1498 aa16.79■□□□□ 0.28
SEC31A-228ENST00000509142 CEP164Q9UPV0 1460 aa16.79■□□□□ 0.28
SEC31A-228ENST00000509142 CCER1Q8TC90 406 aaPredicted RBP16.78■□□□□ 0.28
SEC31A-228ENST00000509142 RANGAP1P46060 587 aaPredicted RBP16.78■□□□□ 0.28
SEC31A-228ENST00000509142 HMGXB3Q12766 1538 aa16.73■□□□□ 0.27
SEC31A-228ENST00000509142 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
SEC31A-228ENST00000509142 APLP2Q06481 763 aa16.71■□□□□ 0.27
SEC31A-228ENST00000509142 CLIP1P30622 1438 aa16.69■□□□□ 0.26
SEC31A-228ENST00000509142 KIF21BO75037 1637 aa16.67■□□□□ 0.26
SEC31A-228ENST00000509142 TOP2BQ02880 1626 aa16.67■□□□□ 0.26
SEC31A-228ENST00000509142 RAPGEF2Q9Y4G8 1499 aa16.65■□□□□ 0.26
SEC31A-228ENST00000509142 CFTRP13569 1480 aa16.6■□□□□ 0.25
SEC31A-228ENST00000509142 BIVM-ERCC5R4GMW8 1640 aa16.57■□□□□ 0.24
SEC31A-228ENST00000509142 KIF27Q86VH2 1401 aa16.56■□□□□ 0.24
SEC31A-228ENST00000509142 VPS8Q8N3P4 1428 aa16.55■□□□□ 0.24
SEC31A-228ENST00000509142 CUX1P39880 1505 aa16.55■□□□□ 0.24
SEC31A-228ENST00000509142 HNRNPUL2Q1KMD3 747 aaKnown RBP16.54■□□□□ 0.24
SEC31A-228ENST00000509142 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
SEC31A-228ENST00000509142 PRXQ9BXM0 1461 aa16.48■□□□□ 0.23
SEC31A-228ENST00000509142 NEUROD1Q13562 356 aa16.48■□□□□ 0.23
SEC31A-228ENST00000509142 DIEXFQ68CQ4 756 aaKnown RBP16.48■□□□□ 0.23
SEC31A-228ENST00000509142 ERICH3Q5RHP9 1530 aa16.46■□□□□ 0.23
SEC31A-228ENST00000509142 CC2D2AQ9P2K1 1620 aa16.44■□□□□ 0.22
SEC31A-228ENST00000509142 ACIN1Q9UKV3 1341 aaKnown RBP16.43■□□□□ 0.22
SEC31A-228ENST00000509142 CUX2O14529 1486 aa16.42■□□□□ 0.22
SEC31A-228ENST00000509142 IGF1RP08069 1367 aa16.34■□□□□ 0.21
SEC31A-228ENST00000509142 FGD5Q6ZNL6 1462 aa16.34■□□□□ 0.21
SEC31A-228ENST00000509142 PRDM2Q13029 1718 aa16.34■□□□□ 0.21
SEC31A-228ENST00000509142 FANCD2Q9BXW9 1451 aa16.33■□□□□ 0.21
SEC31A-228ENST00000509142 ARAP1Q96P48 1450 aa16.33■□□□□ 0.2
SEC31A-228ENST00000509142 CARMIL1Q5VZK9 1371 aa16.33■□□□□ 0.2
SEC31A-228ENST00000509142 ZNF316A6NFI3 1004 aaPredicted RBP16.32■□□□□ 0.2
SEC31A-228ENST00000509142 KANK4Q5T7N3 995 aaPredicted RBP16.31■□□□□ 0.2
SEC31A-228ENST00000509142 GTF3C3Q9Y5Q9 886 aa16.26■□□□□ 0.19
SEC31A-228ENST00000509142 ARHGAP35Q9NRY4 1499 aa16.25■□□□□ 0.19
SEC31A-228ENST00000509142 ATP1B4Q9UN42 357 aaPredicted RBP16.24■□□□□ 0.19
SEC31A-228ENST00000509142 NESP48681 1621 aa16.24■□□□□ 0.19
SEC31A-228ENST00000509142 P3H3Q8IVL6 736 aa16.22■□□□□ 0.19
SEC31A-228ENST00000509142 ITGAEP38570 1179 aa16.21■□□□□ 0.19
SEC31A-228ENST00000509142 RAD54L2Q9Y4B4 1467 aa16.2■□□□□ 0.18
SEC31A-228ENST00000509142 MIER1Q8N108 512 aa16.19■□□□□ 0.18
SEC31A-228ENST00000509142 DNMBPQ6XZF7 1577 aa16.18■□□□□ 0.18
SEC31A-228ENST00000509142 TOPBP1Q92547 1522 aa16.18■□□□□ 0.18
SEC31A-228ENST00000509142 PELP1Q8IZL8 1130 aaKnown RBP16.18■□□□□ 0.18
SEC31A-228ENST00000509142 CENPBP07199 599 aaPredicted RBP16.16■□□□□ 0.18
SEC31A-228ENST00000509142 POLA1P09884 1462 aaPredicted RBP16.16■□□□□ 0.18
SEC31A-228ENST00000509142 CCNB3Q8WWL7 1395 aa16.13■□□□□ 0.17
SEC31A-228ENST00000509142 YTHDC1Q96MU7 727 aaKnown RBP16.13■□□□□ 0.17
SEC31A-228ENST00000509142 ABCA10Q8WWZ4 1543 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms