RNA–Protein interactions for RNA: ENST00000587928.5

ILF3-208, Transcript of interleukin enhancer binding factor 3, humanhuman

TSL 2

Gene ILF3, Length 4,230 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ILF3-208ENST00000587928 NISCHQ9Y2I1 1504 aa24.43■■□□□ 1.5
ILF3-208ENST00000587928 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
ILF3-208ENST00000587928 ZCCHC6Q5VYS8 1495 aaKnown RBP20.82■□□□□ 0.92
ILF3-208ENST00000587928 DCAF1Q9Y4B6 1507 aa20.54■□□□□ 0.88
ILF3-208ENST00000587928 MYO15BQ96JP2 1530 aa20.08■□□□□ 0.8
ILF3-208ENST00000587928 ABCC9O60706 1549 aa19.7■□□□□ 0.74
ILF3-208ENST00000587928 NACADO15069 1562 aa19.41■□□□□ 0.7
ILF3-208ENST00000587928 SHROOM4Q9ULL8 1493 aa19.4■□□□□ 0.7
ILF3-208ENST00000587928 UNC13AQ9UPW8 1703 aa19.39■□□□□ 0.69
ILF3-208ENST00000587928 EIF4G1Q04637 1599 aaKnown RBP19.25■□□□□ 0.67
ILF3-208ENST00000587928 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
ILF3-208ENST00000587928 RSF1Q96T23 1441 aaPredicted RBP19.06■□□□□ 0.64
ILF3-208ENST00000587928 RB1CC1Q8TDY2 1594 aa19.05■□□□□ 0.64
ILF3-208ENST00000587928 BAZ1AQ9NRL2 1556 aaPredicted RBP18.95■□□□□ 0.62
ILF3-208ENST00000587928 BICRAQ9NZM4 1560 aa18.88■□□□□ 0.61
ILF3-208ENST00000587928 MROH2BQ7Z745 1585 aa18.88■□□□□ 0.61
ILF3-208ENST00000587928 WIZO95785 1651 aa18.85■□□□□ 0.61
ILF3-208ENST00000587928 CHIC1Q5VXU3 224 aa18.83■□□□□ 0.6
ILF3-208ENST00000587928 PEG3Q9GZU2 1588 aa18.83■□□□□ 0.6
ILF3-208ENST00000587928 CECR2Q9BXF3 1484 aa18.81■□□□□ 0.6
ILF3-208ENST00000587928 SMARCA4P51532 1647 aa18.76■□□□□ 0.59
ILF3-208ENST00000587928 SUPT5HO00267 1087 aaKnown RBP18.69■□□□□ 0.58
ILF3-208ENST00000587928 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
ILF3-208ENST00000587928 TOP2AP11388 1531 aaKnown RBP18.64■□□□□ 0.57
ILF3-208ENST00000587928 PELP1Q8IZL8 1130 aaKnown RBP18.62■□□□□ 0.57
ILF3-208ENST00000587928 SMARCA2P51531 1590 aa18.58■□□□□ 0.56
ILF3-208ENST00000587928 MYT1Q01538 1121 aa18.5■□□□□ 0.55
ILF3-208ENST00000587928 CCDC88BA6NC98 1476 aa18.28■□□□□ 0.52
ILF3-208ENST00000587928 PRDM2Q13029 1718 aa18.23■□□□□ 0.51
ILF3-208ENST00000587928 BIVM-ERCC5R4GMW8 1640 aa18.12■□□□□ 0.49
ILF3-208ENST00000587928 ABCC8Q09428 1581 aa18.09■□□□□ 0.49
ILF3-208ENST00000587928 HMGXB3Q12766 1538 aa18.08■□□□□ 0.48
ILF3-208ENST00000587928 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
ILF3-208ENST00000587928 SYNJ1O43426 1573 aa18.04■□□□□ 0.48
ILF3-208ENST00000587928 KIF21BO75037 1637 aa17.97■□□□□ 0.47
ILF3-208ENST00000587928 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
ILF3-208ENST00000587928 WRNQ14191 1432 aaPredicted RBP eCLIP17.91■□□□□ 0.46
ILF3-208ENST00000587928 LOC105371045A0A1W2PR82 267 aa17.89■□□□□ 0.45
ILF3-208ENST00000587928 NCAPD3P42695 1498 aa17.85■□□□□ 0.45
ILF3-208ENST00000587928 HRCP23327 699 aa17.85■□□□□ 0.45
ILF3-208ENST00000587928 RUSC2Q8N2Y8 1516 aa17.77■□□□□ 0.44
ILF3-208ENST00000587928 EEA1Q15075 1411 aa17.77■□□□□ 0.44
ILF3-208ENST00000587928 BAZ1BQ9UIG0 1483 aaKnown RBP17.73■□□□□ 0.43
ILF3-208ENST00000587928 SOGA1O94964 1423 aa17.72■□□□□ 0.43
ILF3-208ENST00000587928 CUX1P39880 1505 aa17.65■□□□□ 0.42
ILF3-208ENST00000587928 CFTRP13569 1480 aa17.64■□□□□ 0.42
ILF3-208ENST00000587928 ERICH3Q5RHP9 1530 aa17.64■□□□□ 0.41
ILF3-208ENST00000587928 WDR97A6NE52 1622 aa17.63■□□□□ 0.41
ILF3-208ENST00000587928 TRIM41Q8WV44 630 aa17.63■□□□□ 0.41
ILF3-208ENST00000587928 TNIKQ9UKE5 1360 aa17.62■□□□□ 0.41
ILF3-208ENST00000587928 PRXQ9BXM0 1461 aa17.55■□□□□ 0.4
ILF3-208ENST00000587928 TTBK1Q5TCY1 1321 aaPredicted RBP17.54■□□□□ 0.4
ILF3-208ENST00000587928 TRIM26Q12899 539 aaPredicted RBP17.52■□□□□ 0.4
ILF3-208ENST00000587928 CEP162Q5TB80 1403 aa17.52■□□□□ 0.39
ILF3-208ENST00000587928 GOLGA3Q08378 1498 aa17.51■□□□□ 0.39
ILF3-208ENST00000587928 CEP164Q9UPV0 1460 aa17.46■□□□□ 0.39
ILF3-208ENST00000587928 CC2D2AQ9P2K1 1620 aa17.45■□□□□ 0.38
ILF3-208ENST00000587928 PABPN1Q86U42 306 aaKnown RBP eCLIP17.44■□□□□ 0.381e-7■■□□□ 12.6
ILF3-208ENST00000587928 PCGF6Q9BYE7 350 aa17.44■□□□□ 0.38
ILF3-208ENST00000587928 RAPGEF2Q9Y4G8 1499 aa17.39■□□□□ 0.38
ILF3-208ENST00000587928 ARAP1Q96P48 1450 aa17.35■□□□□ 0.37
ILF3-208ENST00000587928 LRRIQ1Q96JM4 1722 aa17.28■□□□□ 0.36
ILF3-208ENST00000587928 CFAP43Q8NDM7 1665 aa17.28■□□□□ 0.36
ILF3-208ENST00000587928 ABCA5Q8WWZ7 1642 aa17.27■□□□□ 0.35
ILF3-208ENST00000587928 DNMBPQ6XZF7 1577 aa17.24■□□□□ 0.35
ILF3-208ENST00000587928 VPS8Q8N3P4 1428 aa17.24■□□□□ 0.35
ILF3-208ENST00000587928 CTTNBP2Q8WZ74 1663 aa17.24■□□□□ 0.35
ILF3-208ENST00000587928 CLIP1P30622 1438 aa17.23■□□□□ 0.35
ILF3-208ENST00000587928 CSRNP3Q8WYN3 585 aa17.23■□□□□ 0.35
ILF3-208ENST00000587928 MAP3K1Q13233 1512 aa17.22■□□□□ 0.35
ILF3-208ENST00000587928 CUX2O14529 1486 aa17.22■□□□□ 0.35
ILF3-208ENST00000587928 PPARGC1BQ86YN6 1023 aaKnown RBP17.2■□□□□ 0.34
ILF3-208ENST00000587928 LAMC3Q9Y6N6 1575 aa17.19■□□□□ 0.34
ILF3-208ENST00000587928 CUL7Q14999 1698 aa17.17■□□□□ 0.34
ILF3-208ENST00000587928 TARBP1Q13395 1621 aaKnown RBP17.15■□□□□ 0.34
ILF3-208ENST00000587928 ABCA10Q8WWZ4 1543 aa17.15■□□□□ 0.34
ILF3-208ENST00000587928 KIF21AQ7Z4S6 1674 aa17.14■□□□□ 0.33
ILF3-208ENST00000587928 ARHGAP35Q9NRY4 1499 aa17.13■□□□□ 0.33
ILF3-208ENST00000587928 CADPSQ9ULU8 1353 aa17.13■□□□□ 0.33
ILF3-208ENST00000587928 SAMD9Q5K651 1589 aa17.13■□□□□ 0.33
ILF3-208ENST00000587928 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
ILF3-208ENST00000587928 FAM9AQ8IZU1 332 aaPredicted RBP17.07■□□□□ 0.32
ILF3-208ENST00000587928 TOPBP1Q92547 1522 aa17.06■□□□□ 0.32
ILF3-208ENST00000587928 RRBP1Q9P2E9 1410 aaKnown RBP17.05■□□□□ 0.32
ILF3-208ENST00000587928 URB2Q14146 1524 aaKnown RBP17.03■□□□□ 0.32
ILF3-208ENST00000587928 TIAM1Q13009 1591 aa17.03■□□□□ 0.32
ILF3-208ENST00000587928 PBRM1Q86U86 1689 aa17.03■□□□□ 0.32
ILF3-208ENST00000587928 IGF1RP08069 1367 aa17.02■□□□□ 0.32
ILF3-208ENST00000587928 KIF27Q86VH2 1401 aa17.01■□□□□ 0.31
ILF3-208ENST00000587928 POLA1P09884 1462 aaPredicted RBP17.01■□□□□ 0.31
ILF3-208ENST00000587928 FANCD2Q9BXW9 1451 aa17■□□□□ 0.31
ILF3-208ENST00000587928 PCF11O94913 1555 aaKnown RBP16.96■□□□□ 0.31
ILF3-208ENST00000587928 EFCAB5A4FU69 1503 aa16.95■□□□□ 0.3
ILF3-208ENST00000587928 AQRO60306 1485 aaKnown RBP eCLIP16.95■□□□□ 0.34e-9■■■■□ 23.4
ILF3-208ENST00000587928 ZEB1P37275 1124 aaPredicted RBP16.94■□□□□ 0.3
ILF3-208ENST00000587928 SNAPC4Q5SXM2 1469 aa16.93■□□□□ 0.3
ILF3-208ENST00000587928 NESP48681 1621 aa16.92■□□□□ 0.3
ILF3-208ENST00000587928 ARHGEF11O15085 1522 aa16.91■□□□□ 0.3
ILF3-208ENST00000587928 THOC2Q8NI27 1593 aaKnown RBP16.89■□□□□ 0.29
ILF3-208ENST00000587928 ADAMTS12P58397 1594 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms