RNA–Protein interactions for RNA: ENST00000508282.1

DHFR-204, Transcript of dihydrofolate reductase, humanhuman

TSL 3

Gene DHFR, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-204ENST00000508282 AEBP2Q6ZN18 517 aaPredicted RBP29.69■■■□□ 2.34
DHFR-204ENST00000508282 CHIC1Q5VXU3 224 aa28.83■■■□□ 2.21
DHFR-204ENST00000508282 PHF23Q9BUL5 403 aaPredicted RBP25.39■■□□□ 1.66
DHFR-204ENST00000508282 SENP3Q9H4L4 574 aaPredicted RBP25.16■■□□□ 1.62
DHFR-204ENST00000508282 FOXD1Q16676 465 aa23.4■■□□□ 1.34
DHFR-204ENST00000508282 PLPPR3Q6T4P5 718 aa23.33■■□□□ 1.33
DHFR-204ENST00000508282 PPP6R1Q9UPN7 881 aa22.44■■□□□ 1.18
DHFR-204ENST00000508282 ADRA2BP18089 450 aa22.4■■□□□ 1.18
DHFR-204ENST00000508282 PIAS4Q8N2W9 510 aaPredicted RBP22.01■■□□□ 1.11
DHFR-204ENST00000508282 MSH5O43196 834 aa21.58■■□□□ 1.05
DHFR-204ENST00000508282 PPP4R3CPQ6ZMV5 832 aa20.56■□□□□ 0.88
DHFR-204ENST00000508282 SCAF1Q9H7N4 1312 aaKnown RBP20.42■□□□□ 0.86
DHFR-204ENST00000508282 MAPK8IP2Q13387 824 aaPredicted RBP20.37■□□□□ 0.85
DHFR-204ENST00000508282 DMRT2Q9Y5R5 561 aa20.08■□□□□ 0.81
DHFR-204ENST00000508282 CNKSR2Q8WXI2 1034 aa20■□□□□ 0.79
DHFR-204ENST00000508282 KCNA4P22459 653 aa19.96■□□□□ 0.79
DHFR-204ENST00000508282 NCBP3Q53F19 620 aaKnown RBP19.94■□□□□ 0.78
DHFR-204ENST00000508282 POTEDQ86YR6 584 aa19.91■□□□□ 0.78
DHFR-204ENST00000508282 NPM3O75607 178 aaKnown RBP19.71■□□□□ 0.75
DHFR-204ENST00000508282 RNF216Q9NWF9 866 aaPredicted RBP19.65■□□□□ 0.74
DHFR-204ENST00000508282 HOXD11P31277 338 aaPredicted RBP19.61■□□□□ 0.73
DHFR-204ENST00000508282 DCAF8L1A6NGE4 600 aa19.19■□□□□ 0.66
DHFR-204ENST00000508282 DNAJC5BQ9UF47 199 aa19.15■□□□□ 0.66
DHFR-204ENST00000508282 SLC4A1APQ9BWU0 796 aaKnown RBP18.95■□□□□ 0.62
DHFR-204ENST00000508282 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.67■□□□□ 0.584e-9■□□□□ 9.5
DHFR-204ENST00000508282 SLC4A2P04920 1241 aa18.66■□□□□ 0.58
DHFR-204ENST00000508282 RNF39Q9H2S5 420 aa18.52■□□□□ 0.56
DHFR-204ENST00000508282 ZBTB22O15209 634 aa18.4■□□□□ 0.54
DHFR-204ENST00000508282 U3KPZ7 1027 aaPredicted RBP18.39■□□□□ 0.53
DHFR-204ENST00000508282 FOXD4L1Q9NU39 408 aa18.37■□□□□ 0.53
DHFR-204ENST00000508282 EHMT2Q96KQ7 1210 aa18.28■□□□□ 0.52
DHFR-204ENST00000508282 C1QBPQ07021 282 aaKnown RBP18.26■□□□□ 0.51
DHFR-204ENST00000508282 MYCNP04198 464 aaPredicted RBP18.19■□□□□ 0.5
DHFR-204ENST00000508282 CSRNP3Q8WYN3 585 aa18.15■□□□□ 0.5
DHFR-204ENST00000508282 CACNB1Q02641 598 aaPredicted RBP18.09■□□□□ 0.49
DHFR-204ENST00000508282 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.04■□□□□ 0.48
DHFR-204ENST00000508282 HNRNPUL2Q1KMD3 747 aaKnown RBP18.04■□□□□ 0.48
DHFR-204ENST00000508282 SAMD1Q6SPF0 538 aaPredicted RBP17.99■□□□□ 0.47
DHFR-204ENST00000508282 SPINK5Q9NQ38 1064 aaPredicted RBP17.92■□□□□ 0.46
DHFR-204ENST00000508282 APLP2Q06481 763 aa17.87■□□□□ 0.45
DHFR-204ENST00000508282 CAPN15O75808 1086 aa17.81■□□□□ 0.44
DHFR-204ENST00000508282 ATF5Q9Y2D1 282 aaPredicted RBP17.76■□□□□ 0.43
DHFR-204ENST00000508282 ATXN8OSP0DMR3 200 aa17.74■□□□□ 0.43
DHFR-204ENST00000508282 TRHP20396 242 aaPredicted RBP17.7■□□□□ 0.42
DHFR-204ENST00000508282 ZNF219Q9P2Y4 722 aaPredicted RBP17.68■□□□□ 0.42
DHFR-204ENST00000508282 DSG3P32926 999 aa17.58■□□□□ 0.4
DHFR-204ENST00000508282 ABCB7O75027 752 aa17.49■□□□□ 0.39
DHFR-204ENST00000508282 POLA2Q14181 598 aa17.4■□□□□ 0.38
DHFR-204ENST00000508282 ZBTB12Q9Y330 459 aaPredicted RBP17.06■□□□□ 0.32
DHFR-204ENST00000508282 MKRN4PQ13434 485 aaPredicted RBP16.98■□□□□ 0.31
DHFR-204ENST00000508282 FBLN2P98095 1184 aa16.94■□□□□ 0.3
DHFR-204ENST00000508282 OSCARQ8IYS5 282 aa16.82■□□□□ 0.28
DHFR-204ENST00000508282 RBM42Q9BTD8 480 aaKnown RBP16.7■□□□□ 0.26
DHFR-204ENST00000508282 SPDYE2BA6NHP3 402 aa16.61■□□□□ 0.25
DHFR-204ENST00000508282 SPDYE6P0CI01 402 aa16.61■□□□□ 0.25
DHFR-204ENST00000508282 SPDYE2Q495Y8 402 aa16.61■□□□□ 0.25
DHFR-204ENST00000508282 ZNF692Q9BU19 519 aaPredicted RBP16.53■□□□□ 0.24
DHFR-204ENST00000508282 SPDYE4A6NLX3 237 aa16.5■□□□□ 0.23
DHFR-204ENST00000508282 SSUH2Q9Y2M2 353 aa16.5■□□□□ 0.23
DHFR-204ENST00000508282 AKT1S1Q96B36 256 aa16.49■□□□□ 0.23
DHFR-204ENST00000508282 FKBP8Q14318 412 aa16.39■□□□□ 0.21
DHFR-204ENST00000508282 REM2Q8IYK8 340 aaPredicted RBP16.35■□□□□ 0.21
DHFR-204ENST00000508282 PABPN1Q86U42 306 aaKnown RBP eCLIP16.32■□□□□ 0.21e-6■■■■■ 27.9
DHFR-204ENST00000508282 PROM2Q8N271 834 aa16.23■□□□□ 0.19
DHFR-204ENST00000508282 PITPNM1O00562 1244 aa16.17■□□□□ 0.18
DHFR-204ENST00000508282 SPDYE1Q8NFV5 336 aaPredicted RBP16.14■□□□□ 0.17
DHFR-204ENST00000508282 CHRDL2Q6WN34 429 aa16.09■□□□□ 0.17
DHFR-204ENST00000508282 CLEC11AQ9Y240 323 aa16.08■□□□□ 0.16
DHFR-204ENST00000508282 STAG3Q9UJ98 1225 aa15.98■□□□□ 0.15
DHFR-204ENST00000508282 PRR29P0C7W0 189 aa15.92■□□□□ 0.14
DHFR-204ENST00000508282 FXR2P51116 673 aaKnown RBP eCLIP15.89■□□□□ 0.13
DHFR-204ENST00000508282 PIP4P2Q8N4L2 257 aa15.88■□□□□ 0.13
DHFR-204ENST00000508282 FBXO3Q9UK99 471 aa15.81■□□□□ 0.12
DHFR-204ENST00000508282 PRKAR2AP13861 404 aaKnown RBP15.75■□□□□ 0.11
DHFR-204ENST00000508282 CHADLQ6NUI6 762 aa15.74■□□□□ 0.11
DHFR-204ENST00000508282 POTEHQ6S545 545 aa15.73■□□□□ 0.11
DHFR-204ENST00000508282 CREBZFQ9NS37 354 aa15.73■□□□□ 0.11
DHFR-204ENST00000508282 VASPP50552 380 aaPredicted RBP15.64■□□□□ 0.09
DHFR-204ENST00000508282 MIER1Q8N108 512 aa15.64■□□□□ 0.09
DHFR-204ENST00000508282 PLCD3Q8N3E9 789 aa15.6■□□□□ 0.09
DHFR-204ENST00000508282 MNX1P50219 401 aaPredicted RBP15.57■□□□□ 0.08
DHFR-204ENST00000508282 FARP1Q9Y4F1 1045 aaPredicted RBP15.57■□□□□ 0.08
DHFR-204ENST00000508282 PLEKHG5O94827 1062 aa15.52■□□□□ 0.08
DHFR-204ENST00000508282 IFNLR1Q8IU57 520 aaPredicted RBP15.44■□□□□ 0.06
DHFR-204ENST00000508282 NPM1P06748 294 aaKnown RBP eCLIP15.41■□□□□ 0.06
DHFR-204ENST00000508282 ZBTB47Q9UFB7 747 aaPredicted RBP15.41■□□□□ 0.06
DHFR-204ENST00000508282 HAX1O00165 279 aa15.37■□□□□ 0.05
DHFR-204ENST00000508282 KLHL34Q8N239 644 aa15.37■□□□□ 0.05
DHFR-204ENST00000508282 C19orf67A6NJJ6 358 aa15.36■□□□□ 0.05
DHFR-204ENST00000508282 CD44P16070 742 aaKnown RBP15.29■□□□□ 0.04
DHFR-204ENST00000508282 NUBP1P53384 320 aa15.29■□□□□ 0.04
DHFR-204ENST00000508282 EVX2Q03828 476 aa15.29■□□□□ 0.04
DHFR-204ENST00000508282 RASEFQ8IZ41 740 aa15.27■□□□□ 0.04
DHFR-204ENST00000508282 SPOCK2Q92563 424 aa15.24■□□□□ 0.03
DHFR-204ENST00000508282 TSPYL2Q9H2G4 693 aaPredicted RBP15.18■□□□□ 0.02
DHFR-204ENST00000508282 ZRANB1Q9UGI0 708 aa15.18■□□□□ 0.02
DHFR-204ENST00000508282 PAK3O75914 559 aaPredicted RBP15.16■□□□□ 0.02
DHFR-204ENST00000508282 FAM212AQ96EL1 285 aa15.13■□□□□ 0.01
DHFR-204ENST00000508282 CCDC61Q9Y6R9 512 aa15.1■□□□□ 0.01
DHFR-204ENST00000508282 DCAF8Q5TAQ9 597 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms