RNA–Protein interactions for RNA: ENST00000504396.1

DHFR-202, Transcript of dihydrofolate reductase, humanhuman

TSL 2 BASIC

Gene DHFR, Length 1,447 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-202ENST00000504396 AEBP2Q6ZN18 517 aaPredicted RBP27.78■■■□□ 2.04
DHFR-202ENST00000504396 CHIC1Q5VXU3 224 aa26.78■■□□□ 1.88
DHFR-202ENST00000504396 SENP3Q9H4L4 574 aaPredicted RBP23.59■■□□□ 1.37
DHFR-202ENST00000504396 PHF23Q9BUL5 403 aaPredicted RBP23.55■■□□□ 1.36
DHFR-202ENST00000504396 NISCHQ9Y2I1 1504 aa22.81■■□□□ 1.24
DHFR-202ENST00000504396 FOXD1Q16676 465 aa21.96■■□□□ 1.11
DHFR-202ENST00000504396 PLPPR3Q6T4P5 718 aa21.6■■□□□ 1.05
DHFR-202ENST00000504396 PPP6R1Q9UPN7 881 aa20.89■□□□□ 0.94
DHFR-202ENST00000504396 ADRA2BP18089 450 aa20.87■□□□□ 0.93
DHFR-202ENST00000504396 ABCC9O60706 1549 aa20.82■□□□□ 0.92
DHFR-202ENST00000504396 PIAS4Q8N2W9 510 aaPredicted RBP20.64■□□□□ 0.89
DHFR-202ENST00000504396 CCDC180Q9P1Z9 1646 aa20.6■□□□□ 0.89
DHFR-202ENST00000504396 MSH5O43196 834 aa20.34■□□□□ 0.85
DHFR-202ENST00000504396 RB1CC1Q8TDY2 1594 aa19.71■□□□□ 0.75
DHFR-202ENST00000504396 DNAJC5BQ9UF47 199 aa19.59■□□□□ 0.73
DHFR-202ENST00000504396 NACADO15069 1562 aa19.49■□□□□ 0.71
DHFR-202ENST00000504396 DCAF8L2P0C7V8 631 aa19.46■□□□□ 0.71
DHFR-202ENST00000504396 PABPN1Q86U42 306 aaKnown RBP eCLIP19.33■□□□□ 0.681e-6■■■■■ 27.9
DHFR-202ENST00000504396 UNC13AQ9UPW8 1703 aa19.26■□□□□ 0.67
DHFR-202ENST00000504396 MYO15BQ96JP2 1530 aa19.22■□□□□ 0.67
DHFR-202ENST00000504396 POTEDQ86YR6 584 aa19.13■□□□□ 0.65
DHFR-202ENST00000504396 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.64
DHFR-202ENST00000504396 MAPK8IP2Q13387 824 aaPredicted RBP19.03■□□□□ 0.64
DHFR-202ENST00000504396 SCAF1Q9H7N4 1312 aaKnown RBP19.02■□□□□ 0.64
DHFR-202ENST00000504396 PPP4R3CPQ6ZMV5 832 aa19.01■□□□□ 0.63
DHFR-202ENST00000504396 DCAF1Q9Y4B6 1507 aa18.9■□□□□ 0.62
DHFR-202ENST00000504396 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
DHFR-202ENST00000504396 ZCCHC6Q5VYS8 1495 aaKnown RBP18.87■□□□□ 0.61
DHFR-202ENST00000504396 SCRIBQ14160 1630 aa18.81■□□□□ 0.6
DHFR-202ENST00000504396 DMRT2Q9Y5R5 561 aa18.78■□□□□ 0.6
DHFR-202ENST00000504396 CC2D2AQ9P2K1 1620 aa18.77■□□□□ 0.6
DHFR-202ENST00000504396 CECR2Q9BXF3 1484 aa18.75■□□□□ 0.59
DHFR-202ENST00000504396 EIF4G1Q04637 1599 aaKnown RBP18.67■□□□□ 0.58
DHFR-202ENST00000504396 CNKSR2Q8WXI2 1034 aa18.52■□□□□ 0.56
DHFR-202ENST00000504396 NCBP3Q53F19 620 aaKnown RBP18.39■□□□□ 0.53
DHFR-202ENST00000504396 HOXD11P31277 338 aaPredicted RBP18.25■□□□□ 0.51
DHFR-202ENST00000504396 RNF216Q9NWF9 866 aaPredicted RBP18.23■□□□□ 0.51
DHFR-202ENST00000504396 KCNA4P22459 653 aa18.23■□□□□ 0.51
DHFR-202ENST00000504396 NPM3O75607 178 aaKnown RBP18.15■□□□□ 0.5
DHFR-202ENST00000504396 DNAJC5Q9H3Z4 198 aa18.14■□□□□ 0.49
DHFR-202ENST00000504396 DCAF8L1A6NGE4 600 aa18.04■□□□□ 0.48
DHFR-202ENST00000504396 ERCC6Q03468 1493 aa18.03■□□□□ 0.48
DHFR-202ENST00000504396 CUX2O14529 1486 aa17.97■□□□□ 0.47
DHFR-202ENST00000504396 NCAPD3P42695 1498 aa17.95■□□□□ 0.46
DHFR-202ENST00000504396 ATAD2BQ9ULI0 1458 aa17.9■□□□□ 0.46
DHFR-202ENST00000504396 SMARCA2P51531 1590 aa17.88■□□□□ 0.45
DHFR-202ENST00000504396 SMARCA4P51532 1647 aa17.87■□□□□ 0.45
DHFR-202ENST00000504396 HMGXB3Q12766 1538 aa17.85■□□□□ 0.45
DHFR-202ENST00000504396 NESP48681 1621 aa17.8■□□□□ 0.44
DHFR-202ENST00000504396 BAZ1BQ9UIG0 1483 aaKnown RBP17.77■□□□□ 0.44
DHFR-202ENST00000504396 BAZ1AQ9NRL2 1556 aaPredicted RBP17.75■□□□□ 0.43
DHFR-202ENST00000504396 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
DHFR-202ENST00000504396 THOC2Q8NI27 1593 aaKnown RBP17.66■□□□□ 0.42
DHFR-202ENST00000504396 LAMC3Q9Y6N6 1575 aa17.64■□□□□ 0.41
DHFR-202ENST00000504396 KIF21AQ7Z4S6 1674 aa17.6■□□□□ 0.41
DHFR-202ENST00000504396 MROH2BQ7Z745 1585 aa17.59■□□□□ 0.41
DHFR-202ENST00000504396 PDS5BQ9NTI5 1447 aa17.54■□□□□ 0.4
DHFR-202ENST00000504396 CADPSQ9ULU8 1353 aa17.42■□□□□ 0.38
DHFR-202ENST00000504396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.42■□□□□ 0.384e-9■□□□□ 9.5
DHFR-202ENST00000504396 RNF39Q9H2S5 420 aa17.42■□□□□ 0.38
DHFR-202ENST00000504396 MRC2Q9UBG0 1479 aa17.41■□□□□ 0.38
DHFR-202ENST00000504396 WIZO95785 1651 aa17.41■□□□□ 0.38
DHFR-202ENST00000504396 TRIM41Q8WV44 630 aa17.4■□□□□ 0.38
DHFR-202ENST00000504396 WDR62O43379 1518 aa17.36■□□□□ 0.37
DHFR-202ENST00000504396 CEP164Q9UPV0 1460 aa17.32■□□□□ 0.36
DHFR-202ENST00000504396 SLC4A1APQ9BWU0 796 aaKnown RBP17.28■□□□□ 0.36
DHFR-202ENST00000504396 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.36
DHFR-202ENST00000504396 SLC4A2P04920 1241 aa17.22■□□□□ 0.35
DHFR-202ENST00000504396 CACNB1Q02641 598 aaPredicted RBP17.21■□□□□ 0.35
DHFR-202ENST00000504396 CFTRP13569 1480 aa17.18■□□□□ 0.34
DHFR-202ENST00000504396 C1QBPQ07021 282 aaKnown RBP17.17■□□□□ 0.34
DHFR-202ENST00000504396 TOP2AP11388 1531 aaKnown RBP17.15■□□□□ 0.34
DHFR-202ENST00000504396 RSF1Q96T23 1441 aaPredicted RBP17.13■□□□□ 0.33
DHFR-202ENST00000504396 URB2Q14146 1524 aaKnown RBP17.12■□□□□ 0.33
DHFR-202ENST00000504396 OSCARQ8IYS5 282 aa17.12■□□□□ 0.33
DHFR-202ENST00000504396 U3KPZ7 1027 aaPredicted RBP17.11■□□□□ 0.33
DHFR-202ENST00000504396 PRDM2Q13029 1718 aa17.08■□□□□ 0.32
DHFR-202ENST00000504396 RIMBP3CA6NJZ7 1639 aa16.96■□□□□ 0.31
DHFR-202ENST00000504396 RIMBP3BA6NNM3 1639 aa16.96■□□□□ 0.31
DHFR-202ENST00000504396 RIMBP3Q9UFD9 1639 aa16.96■□□□□ 0.31
DHFR-202ENST00000504396 IFT140Q96RY7 1462 aa16.95■□□□□ 0.3
DHFR-202ENST00000504396 ZNF608Q9ULD9 1512 aaPredicted RBP16.95■□□□□ 0.3
DHFR-202ENST00000504396 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
DHFR-202ENST00000504396 TOPBP1Q92547 1522 aa16.91■□□□□ 0.3
DHFR-202ENST00000504396 EIF4G3O43432 1585 aaKnown RBP16.89■□□□□ 0.29
DHFR-202ENST00000504396 ABCC8Q09428 1581 aa16.87■□□□□ 0.29
DHFR-202ENST00000504396 ARHGEF11O15085 1522 aa16.87■□□□□ 0.29
DHFR-202ENST00000504396 DNMBPQ6XZF7 1577 aa16.85■□□□□ 0.29
DHFR-202ENST00000504396 FOXD4L1Q9NU39 408 aa16.83■□□□□ 0.28
DHFR-202ENST00000504396 CHD1O14646 1710 aa16.82■□□□□ 0.28
DHFR-202ENST00000504396 FBLN2P98095 1184 aa16.79■□□□□ 0.28
DHFR-202ENST00000504396 ZBTB22O15209 634 aa16.78■□□□□ 0.28
DHFR-202ENST00000504396 AQRO60306 1485 aaKnown RBP eCLIP16.78■□□□□ 0.282e-19■■■□□ 14.9
DHFR-202ENST00000504396 CYB5RLQ6IPT4 315 aa16.77■□□□□ 0.27
DHFR-202ENST00000504396 MYCNP04198 464 aaPredicted RBP16.76■□□□□ 0.27
DHFR-202ENST00000504396 SPINK5Q9NQ38 1064 aaPredicted RBP16.76■□□□□ 0.27
DHFR-202ENST00000504396 TARBP1Q13395 1621 aaKnown RBP16.76■□□□□ 0.27
DHFR-202ENST00000504396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.73■□□□□ 0.27
DHFR-202ENST00000504396 HNRNPUL2Q1KMD3 747 aaKnown RBP16.73■□□□□ 0.27
DHFR-202ENST00000504396 POLA1P09884 1462 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms