RNA–Protein interactions for RNA: ENST00000414620.1

ACTB-202, Transcript of actin beta, humanhuman

TSL 4

Gene ACTB, Length 561 nt, Biotype protein coding, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-202ENST00000414620 NISCHQ9Y2I1 1504 aa38.73■■■■□ 3.79
ACTB-202ENST00000414620 CCDC180Q9P1Z9 1646 aa34.75■■■■□ 3.15
ACTB-202ENST00000414620 ABCC9O60706 1549 aa34.53■■■■□ 3.12
ACTB-202ENST00000414620 RB1CC1Q8TDY2 1594 aa32.93■■■□□ 2.86
ACTB-202ENST00000414620 NACADO15069 1562 aa32.73■■■□□ 2.83
ACTB-202ENST00000414620 DCAF8L2P0C7V8 631 aa32.62■■■□□ 2.81
ACTB-202ENST00000414620 UNC13AQ9UPW8 1703 aa32.37■■■□□ 2.77
ACTB-202ENST00000414620 MYO15BQ96JP2 1530 aa32.26■■■□□ 2.76
ACTB-202ENST00000414620 ZCCHC6Q5VYS8 1495 aaKnown RBP32.17■■■□□ 2.74
ACTB-202ENST00000414620 PABPN1Q86U42 306 aaKnown RBP eCLIP32.13■■■□□ 2.73
ACTB-202ENST00000414620 DNAJC5BQ9UF47 199 aa32.12■■■□□ 2.73
ACTB-202ENST00000414620 BICRAQ9NZM4 1560 aa31.98■■■□□ 2.71
ACTB-202ENST00000414620 DCAF1Q9Y4B6 1507 aa31.96■■■□□ 2.71
ACTB-202ENST00000414620 SCRIBQ14160 1630 aa31.73■■■□□ 2.67
ACTB-202ENST00000414620 SHROOM4Q9ULL8 1493 aa31.46■■■□□ 2.63
ACTB-202ENST00000414620 CC2D2AQ9P2K1 1620 aa31.23■■■□□ 2.59
ACTB-202ENST00000414620 EIF4G1Q04637 1599 aaKnown RBP31.18■■■□□ 2.58
ACTB-202ENST00000414620 CECR2Q9BXF3 1484 aa31.04■■■□□ 2.56
ACTB-202ENST00000414620 SMARCA4P51532 1647 aa30.25■■■□□ 2.43
ACTB-202ENST00000414620 NCAPD3P42695 1498 aa30.15■■■□□ 2.42
ACTB-202ENST00000414620 ATAD2BQ9ULI0 1458 aa30.14■■■□□ 2.42
ACTB-202ENST00000414620 SMARCA2P51531 1590 aa30.08■■■□□ 2.41
ACTB-202ENST00000414620 BAZ1AQ9NRL2 1556 aaPredicted RBP30.07■■■□□ 2.4
ACTB-202ENST00000414620 HMGXB3Q12766 1538 aa30.01■■■□□ 2.4
ACTB-202ENST00000414620 BAZ1BQ9UIG0 1483 aaKnown RBP29.89■■■□□ 2.38
ACTB-202ENST00000414620 MROH2BQ7Z745 1585 aa29.89■■■□□ 2.38
ACTB-202ENST00000414620 PEG3Q9GZU2 1588 aa29.88■■■□□ 2.37
ACTB-202ENST00000414620 ERCC6Q03468 1493 aa29.78■■■□□ 2.36
ACTB-202ENST00000414620 NESP48681 1621 aa29.73■■■□□ 2.35
ACTB-202ENST00000414620 WIZO95785 1651 aa29.62■■■□□ 2.33
ACTB-202ENST00000414620 CUX2O14529 1486 aa29.61■■■□□ 2.33
ACTB-202ENST00000414620 LAMC3Q9Y6N6 1575 aa29.52■■■□□ 2.32
ACTB-202ENST00000414620 KIF21AQ7Z4S6 1674 aa29.46■■■□□ 2.31
ACTB-202ENST00000414620 THOC2Q8NI27 1593 aaKnown RBP29.43■■■□□ 2.3
ACTB-202ENST00000414620 RSF1Q96T23 1441 aaPredicted RBP29.28■■■□□ 2.28
ACTB-202ENST00000414620 DNAJC5Q9H3Z4 198 aa29.28■■■□□ 2.28
ACTB-202ENST00000414620 PDS5BQ9NTI5 1447 aa29.28■■■□□ 2.28
ACTB-202ENST00000414620 CADPSQ9ULU8 1353 aa29.25■■■□□ 2.27
ACTB-202ENST00000414620 TOP2AP11388 1531 aaKnown RBP29.2■■■□□ 2.26
ACTB-202ENST00000414620 MRC2Q9UBG0 1479 aa29.07■■■□□ 2.24
ACTB-202ENST00000414620 WDR62O43379 1518 aa29.01■■■□□ 2.23
ACTB-202ENST00000414620 CEP164Q9UPV0 1460 aa29.01■■■□□ 2.23
ACTB-202ENST00000414620 FANCD2Q9BXW9 1451 aa28.98■■■□□ 2.23
ACTB-202ENST00000414620 CFTRP13569 1480 aa28.97■■■□□ 2.23
ACTB-202ENST00000414620 PRDM2Q13029 1718 aa28.94■■■□□ 2.22
ACTB-202ENST00000414620 CCDC88BA6NC98 1476 aa28.82■■■□□ 2.2
ACTB-202ENST00000414620 URB2Q14146 1524 aaKnown RBP28.75■■■□□ 2.19
ACTB-202ENST00000414620 TOPBP1Q92547 1522 aa28.48■■■□□ 2.15
ACTB-202ENST00000414620 DNMBPQ6XZF7 1577 aa28.41■■■□□ 2.14
ACTB-202ENST00000414620 IFT140Q96RY7 1462 aa28.39■■■□□ 2.13
ACTB-202ENST00000414620 ZNF608Q9ULD9 1512 aaPredicted RBP28.37■■■□□ 2.13
ACTB-202ENST00000414620 ABCC8Q09428 1581 aa28.35■■■□□ 2.13
ACTB-202ENST00000414620 EIF4G3O43432 1585 aaKnown RBP28.28■■■□□ 2.12
ACTB-202ENST00000414620 TARBP1Q13395 1621 aaKnown RBP28.23■■■□□ 2.11
ACTB-202ENST00000414620 OSCARQ8IYS5 282 aa28.23■■■□□ 2.11
ACTB-202ENST00000414620 TRIM41Q8WV44 630 aa28.21■■■□□ 2.11
ACTB-202ENST00000414620 SUPT5HO00267 1087 aaKnown RBP28.19■■■□□ 2.1
ACTB-202ENST00000414620 POLA1P09884 1462 aaPredicted RBP28.19■■■□□ 2.1
ACTB-202ENST00000414620 AQRO60306 1485 aaKnown RBP eCLIP28.11■■■□□ 2.091e-15■■■■■ 35.7
ACTB-202ENST00000414620 CHD1O14646 1710 aa28.11■■■□□ 2.09
ACTB-202ENST00000414620 RAD54L2Q9Y4B4 1467 aa28.1■■■□□ 2.09
ACTB-202ENST00000414620 CUX1P39880 1505 aa28.08■■■□□ 2.08
ACTB-202ENST00000414620 FGD5Q6ZNL6 1462 aa28.07■■■□□ 2.08
ACTB-202ENST00000414620 SOGA1O94964 1423 aa28.02■■■□□ 2.08
ACTB-202ENST00000414620 RIMBP3CA6NJZ7 1639 aa28■■■□□ 2.07
ACTB-202ENST00000414620 RIMBP3BA6NNM3 1639 aa28■■■□□ 2.07
ACTB-202ENST00000414620 RIMBP3Q9UFD9 1639 aa28■■■□□ 2.07
ACTB-202ENST00000414620 TDRD9Q8NDG6 1382 aaKnown RBP27.96■■■□□ 2.07
ACTB-202ENST00000414620 WDR97A6NE52 1622 aa27.94■■■□□ 2.06
ACTB-202ENST00000414620 ARHGEF11O15085 1522 aa27.88■■■□□ 2.05
ACTB-202ENST00000414620 FBLN2P98095 1184 aa27.88■■■□□ 2.05
ACTB-202ENST00000414620 SNAPC4Q5SXM2 1469 aa27.88■■■□□ 2.05
ACTB-202ENST00000414620 PBRM1Q86U86 1689 aa27.85■■■□□ 2.05
ACTB-202ENST00000414620 GRIN2BQ13224 1484 aa27.76■■■□□ 2.04
ACTB-202ENST00000414620 MAGI1Q96QZ7 1491 aaPredicted RBP27.75■■■□□ 2.03
ACTB-202ENST00000414620 ABCA5Q8WWZ7 1642 aa27.74■■■□□ 2.03
ACTB-202ENST00000414620 BIVM-ERCC5R4GMW8 1640 aa27.73■■■□□ 2.03
ACTB-202ENST00000414620 ABCA10Q8WWZ4 1543 aa27.72■■■□□ 2.03
ACTB-202ENST00000414620 GAPVD1Q14C86 1478 aa27.71■■■□□ 2.03
ACTB-202ENST00000414620 SYNJ1O43426 1573 aa27.7■■■□□ 2.03
ACTB-202ENST00000414620 TOP2BQ02880 1626 aa27.68■■■□□ 2.02
ACTB-202ENST00000414620 CLASP1Q7Z460 1538 aa27.67■■■□□ 2.02
ACTB-202ENST00000414620 CHMP7Q8WUX9 453 aaPredicted RBP27.66■■■□□ 2.02
ACTB-202ENST00000414620 SYNJ2O15056 1496 aa27.65■■■□□ 2.02
ACTB-202ENST00000414620 WRNQ14191 1432 aaPredicted RBP eCLIP27.65■■■□□ 2.023e-23■■□□□ 11.8
ACTB-202ENST00000414620 ARAP1Q96P48 1450 aa27.63■■■□□ 2.01
ACTB-202ENST00000414620 CYB5RLQ6IPT4 315 aa27.6■■■□□ 2.01
ACTB-202ENST00000414620 ADAMTS12P58397 1594 aa27.52■■■□□ 2
ACTB-202ENST00000414620 GRIN2AQ12879 1464 aa27.44■■□□□ 1.98
ACTB-202ENST00000414620 CEP170Q5SW79 1584 aa27.39■■□□□ 1.97
ACTB-202ENST00000414620 ERICH3Q5RHP9 1530 aa27.37■■□□□ 1.97
ACTB-202ENST00000414620 FHAD1B1AJZ9 1412 aa27.34■■□□□ 1.97
ACTB-202ENST00000414620 NUP160Q12769 1436 aa27.31■■□□□ 1.96
ACTB-202ENST00000414620 ERCC6L2Q5T890 1561 aa27.31■■□□□ 1.96
ACTB-202ENST00000414620 TRHP20396 242 aaPredicted RBP27.26■■□□□ 1.95
ACTB-202ENST00000414620 SHROOM2Q13796 1616 aa27.23■■□□□ 1.95
ACTB-202ENST00000414620 RUSC2Q8N2Y8 1516 aa27.13■■□□□ 1.93
ACTB-202ENST00000414620 CUL7Q14999 1698 aa27.09■■□□□ 1.93
ACTB-202ENST00000414620 KIF27Q86VH2 1401 aa27.08■■□□□ 1.93
ACTB-202ENST00000414620 PRG4Q92954 1404 aaPredicted RBP27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms