RNA–Protein interactions for RNA: ENST00000439211.6

DHFR-201, Transcript of dihydrofolate reductase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DHFR, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-201ENST00000439211 NISCHQ9Y2I1 1504 aa29.97■■■□□ 2.39
DHFR-201ENST00000439211 SHROOM4Q9ULL8 1493 aa26.94■■□□□ 1.9
DHFR-201ENST00000439211 SUPT5HO00267 1087 aaKnown RBP26.74■■□□□ 1.87
DHFR-201ENST00000439211 DCAF8L2P0C7V8 631 aa26.61■■□□□ 1.85
DHFR-201ENST00000439211 PELP1Q8IZL8 1130 aaKnown RBP26.57■■□□□ 1.84
DHFR-201ENST00000439211 HRCP23327 699 aa26.06■■□□□ 1.76
DHFR-201ENST00000439211 MYT1Q01538 1121 aa25.84■■□□□ 1.73
DHFR-201ENST00000439211 PPARGC1BQ86YN6 1023 aaKnown RBP25.73■■□□□ 1.71
DHFR-201ENST00000439211 PCGF6Q9BYE7 350 aa25.68■■□□□ 1.7
DHFR-201ENST00000439211 CHIC1Q5VXU3 224 aa25.44■■□□□ 1.66
DHFR-201ENST00000439211 ZCCHC6Q5VYS8 1495 aaKnown RBP25.24■■□□□ 1.63
DHFR-201ENST00000439211 LOC105371045A0A1W2PR82 267 aa25.07■■□□□ 1.6
DHFR-201ENST00000439211 SCAF1Q9H7N4 1312 aaKnown RBP25.04■■□□□ 1.6
DHFR-201ENST00000439211 EHMT2Q96KQ7 1210 aa25.04■■□□□ 1.6
DHFR-201ENST00000439211 CCDC180Q9P1Z9 1646 aa25.02■■□□□ 1.6
DHFR-201ENST00000439211 MYO15BQ96JP2 1530 aa24.97■■□□□ 1.59
DHFR-201ENST00000439211 FAM9AQ8IZU1 332 aaPredicted RBP24.89■■□□□ 1.58
DHFR-201ENST00000439211 TRIM41Q8WV44 630 aa24.68■■□□□ 1.54
DHFR-201ENST00000439211 TRIM26Q12899 539 aaPredicted RBP24.55■■□□□ 1.52
DHFR-201ENST00000439211 ZEB1P37275 1124 aaPredicted RBP24.52■■□□□ 1.52
DHFR-201ENST00000439211 CENPBP07199 599 aaPredicted RBP24.48■■□□□ 1.51
DHFR-201ENST00000439211 GTF3C3Q9Y5Q9 886 aa24.45■■□□□ 1.5
DHFR-201ENST00000439211 ACIN1Q9UKV3 1341 aaKnown RBP24.38■■□□□ 1.49
DHFR-201ENST00000439211 ABCC9O60706 1549 aa24.33■■□□□ 1.49
DHFR-201ENST00000439211 NEUROD1Q13562 356 aa24.26■■□□□ 1.47
DHFR-201ENST00000439211 DCAF1Q9Y4B6 1507 aa24.26■■□□□ 1.47
DHFR-201ENST00000439211 TTBK1Q5TCY1 1321 aaPredicted RBP24.23■■□□□ 1.47
DHFR-201ENST00000439211 SCRIBQ14160 1630 aa24.16■■□□□ 1.46
DHFR-201ENST00000439211 RSF1Q96T23 1441 aaPredicted RBP24.01■■□□□ 1.43
DHFR-201ENST00000439211 YTHDC1Q96MU7 727 aaKnown RBP23.99■■□□□ 1.43
DHFR-201ENST00000439211 CCER1Q8TC90 406 aaPredicted RBP23.96■■□□□ 1.43
DHFR-201ENST00000439211 BCL11AQ9H165 835 aa23.95■■□□□ 1.43
DHFR-201ENST00000439211 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.84■■□□□ 1.41
DHFR-201ENST00000439211 DIEXFQ68CQ4 756 aaKnown RBP23.79■■□□□ 1.4
DHFR-201ENST00000439211 UBTFP17480 764 aaKnown RBP23.73■■□□□ 1.39
DHFR-201ENST00000439211 RB1CC1Q8TDY2 1594 aa23.69■■□□□ 1.38
DHFR-201ENST00000439211 CECR2Q9BXF3 1484 aa23.64■■□□□ 1.37
DHFR-201ENST00000439211 RANGAP1P46060 587 aaPredicted RBP23.62■■□□□ 1.37
DHFR-201ENST00000439211 PABPN1Q86U42 306 aaKnown RBP eCLIP23.61■■□□□ 1.371e-6■■■■■ 27.9
DHFR-201ENST00000439211 NACADO15069 1562 aa23.5■■□□□ 1.35
DHFR-201ENST00000439211 ANP32EQ9BTT0 268 aa23.45■■□□□ 1.35
DHFR-201ENST00000439211 MROH2BQ7Z745 1585 aa23.43■■□□□ 1.34
DHFR-201ENST00000439211 APLP2Q06481 763 aa23.42■■□□□ 1.34
DHFR-201ENST00000439211 PRKCSHP14314 528 aaPredicted RBP23.39■■□□□ 1.34
DHFR-201ENST00000439211 HNRNPUL2Q1KMD3 747 aaKnown RBP23.34■■□□□ 1.33
DHFR-201ENST00000439211 ERICH6Q7L0X2 663 aa23.28■■□□□ 1.32
DHFR-201ENST00000439211 CSRNP3Q8WYN3 585 aa23.26■■□□□ 1.31
DHFR-201ENST00000439211 WIZO95785 1651 aa23.25■■□□□ 1.31
DHFR-201ENST00000439211 ABCC8Q09428 1581 aa23.08■■□□□ 1.29
DHFR-201ENST00000439211 CEP162Q5TB80 1403 aa23.08■■□□□ 1.29
DHFR-201ENST00000439211 BAZ1AQ9NRL2 1556 aaPredicted RBP23.06■■□□□ 1.28
DHFR-201ENST00000439211 SOGA1O94964 1423 aa23.05■■□□□ 1.28
DHFR-201ENST00000439211 CCDC88BA6NC98 1476 aa23.05■■□□□ 1.28
DHFR-201ENST00000439211 ZNF316A6NFI3 1004 aaPredicted RBP23.02■■□□□ 1.27
DHFR-201ENST00000439211 MIER1Q8N108 512 aa22.94■■□□□ 1.26
DHFR-201ENST00000439211 BCANQ96GW7 911 aa22.91■■□□□ 1.26
DHFR-201ENST00000439211 TNIKQ9UKE5 1360 aa22.9■■□□□ 1.26
DHFR-201ENST00000439211 ITGAEP38570 1179 aa22.88■■□□□ 1.25
DHFR-201ENST00000439211 TSHZ2Q9NRE2 1034 aa22.87■■□□□ 1.25
DHFR-201ENST00000439211 RUSC2Q8N2Y8 1516 aa22.82■■□□□ 1.24
DHFR-201ENST00000439211 SUPT16HQ9Y5B9 1047 aaKnown RBP22.82■■□□□ 1.24
DHFR-201ENST00000439211 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
DHFR-201ENST00000439211 TOP2AP11388 1531 aaKnown RBP22.78■■□□□ 1.24
DHFR-201ENST00000439211 GOLGA3Q08378 1498 aa22.76■■□□□ 1.23
DHFR-201ENST00000439211 EEA1Q15075 1411 aa22.75■■□□□ 1.23
DHFR-201ENST00000439211 ATP1B4Q9UN42 357 aaPredicted RBP22.74■■□□□ 1.23
DHFR-201ENST00000439211 CLIP1P30622 1438 aa22.73■■□□□ 1.23
DHFR-201ENST00000439211 SMARCA4P51532 1647 aa22.72■■□□□ 1.23
DHFR-201ENST00000439211 CLSPNQ9HAW4 1339 aa22.68■■□□□ 1.22
DHFR-201ENST00000439211 NEFLP07196 543 aa22.65■■□□□ 1.22
DHFR-201ENST00000439211 SMARCA2P51531 1590 aa22.64■■□□□ 1.21
DHFR-201ENST00000439211 CEP164Q9UPV0 1460 aa22.57■■□□□ 1.2
DHFR-201ENST00000439211 BAZ1BQ9UIG0 1483 aaKnown RBP22.56■■□□□ 1.2
DHFR-201ENST00000439211 FKBP8Q14318 412 aa22.48■■□□□ 1.19
DHFR-201ENST00000439211 ANO8Q9HCE9 1232 aaPredicted RBP22.44■■□□□ 1.18
DHFR-201ENST00000439211 RBM19Q9Y4C8 960 aaKnown RBP22.43■■□□□ 1.18
DHFR-201ENST00000439211 VPS8Q8N3P4 1428 aa22.42■■□□□ 1.18
DHFR-201ENST00000439211 RAPGEF2Q9Y4G8 1499 aa22.39■■□□□ 1.18
DHFR-201ENST00000439211 FAM50AQ14320 339 aaKnown RBP22.39■■□□□ 1.17
DHFR-201ENST00000439211 EIF4G1Q04637 1599 aaKnown RBP22.38■■□□□ 1.17
DHFR-201ENST00000439211 ATAD2BQ9ULI0 1458 aa22.38■■□□□ 1.17
DHFR-201ENST00000439211 P3H3Q8IVL6 736 aa22.36■■□□□ 1.17
DHFR-201ENST00000439211 KANK4Q5T7N3 995 aaPredicted RBP22.35■■□□□ 1.17
DHFR-201ENST00000439211 UNC13AQ9UPW8 1703 aa22.32■■□□□ 1.16
DHFR-201ENST00000439211 DEKP35659 375 aaKnown RBP22.3■■□□□ 1.16
DHFR-201ENST00000439211 BICRAQ9NZM4 1560 aa22.29■■□□□ 1.16
DHFR-201ENST00000439211 CCDC136Q96JN2 1154 aa22.28■■□□□ 1.16
DHFR-201ENST00000439211 MYT1LQ9UL68 1186 aa22.26■■□□□ 1.15
DHFR-201ENST00000439211 SYNJ1O43426 1573 aa22.25■■□□□ 1.15
DHFR-201ENST00000439211 NBR1Q14596 966 aa22.2■■□□□ 1.14
DHFR-201ENST00000439211 EIF5BO60841 1220 aaKnown RBP22.17■■□□□ 1.14
DHFR-201ENST00000439211 CDK11AQ9UQ88 783 aaPredicted RBP22.17■■□□□ 1.14
DHFR-201ENST00000439211 RTL5Q5HYW3 569 aaPredicted RBP22.16■■□□□ 1.14
DHFR-201ENST00000439211 RTN4Q9NQC3 1192 aaKnown RBP22.16■■□□□ 1.14
DHFR-201ENST00000439211 KIF27Q86VH2 1401 aa22.14■■□□□ 1.13
DHFR-201ENST00000439211 DDX10Q13206 875 aaKnown RBP22.12■■□□□ 1.13
DHFR-201ENST00000439211 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.12■■□□□ 1.13
DHFR-201ENST00000439211 HIRIP3Q9BW71 556 aaPredicted RBP22.12■■□□□ 1.13
DHFR-201ENST00000439211 SALL2Q9Y467 1007 aaPredicted RBP22.11■■□□□ 1.13
DHFR-201ENST00000439211 KIF21BO75037 1637 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms