Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 HM13-213ENST00000469126 756 ntTSL 520.3■□□□□ 0.841e-6■□□□□ 8.7
YBX3P16989 HM13-206ENST00000460389 1075 ntTSL 520.2■□□□□ 0.821e-6■□□□□ 8.7
YBX3P16989 PPHLN1-219ENST00000552202 1290 ntTSL 1 (best)20.14■□□□□ 0.811e-6■□□□□ 8.7
YBX3P16989 HM13-222ENST00000494153 757 ntTSL 520.07■□□□□ 0.81e-6■□□□□ 8.7
YBX3P16989 NUP62-221ENST00000600645 567 ntTSL 419.64■□□□□ 0.731e-9■□□□□ 8.7
YBX3P16989 TSN-203ENST00000455432 555 ntTSL 419.56■□□□□ 0.721e-6■□□□□ 8.7
YBX3P16989 NELFCD-203ENST00000471621 902 ntTSL 219.56■□□□□ 0.721e-6■□□□□ 8.7
YBX3P16989 NELFCD-211ENST00000492016 606 ntTSL 219.56■□□□□ 0.721e-6■□□□□ 8.7
YBX3P16989 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.724e-7■□□□□ 8.7
YBX3P16989 PIEZO1-208ENST00000484567 2464 ntTSL 219.14■□□□□ 0.651e-6■□□□□ 8.7
YBX3P16989 PPHLN1-218ENST00000551723 415 ntTSL 518.68■□□□□ 0.581e-6■□□□□ 8.7
YBX3P16989 RIOK3-210ENST00000584960 572 ntTSL 218.52■□□□□ 0.561e-9■□□□□ 8.7
YBX3P16989 ACY1-219ENST00000637102 1488 ntTSL 318.41■□□□□ 0.541e-6■□□□□ 8.7
YBX3P16989 PRR14-201ENST00000287463 2124 ntTSL 218.37■□□□□ 0.531e-6■□□□□ 8.7
YBX3P16989 UBIAD1-204ENST00000486588 831 ntTSL 518■□□□□ 0.471e-6■□□□□ 8.7
YBX3P16989 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC17■□□□□ 0.314e-7■□□□□ 8.7
YBX3P16989 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC16.72■□□□□ 0.271e-6■□□□□ 8.7
YBX3P16989 HM13-207ENST00000464173 587 ntTSL 216.67■□□□□ 0.261e-6■□□□□ 8.7
YBX3P16989 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.65■□□□□ 0.261e-9■□□□□ 8.7
YBX3P16989 PPHLN1-220ENST00000552429 560 ntTSL 216.56■□□□□ 0.241e-6■□□□□ 8.7
YBX3P16989 HM13-217ENST00000483310 755 ntTSL 316.44■□□□□ 0.221e-6■□□□□ 8.7
YBX3P16989 NUP62-209ENST00000596437 894 ntTSL 416.44■□□□□ 0.221e-9■□□□□ 8.7
YBX3P16989 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.191e-6■□□□□ 8.7
YBX3P16989 PPHLN1-216ENST00000551406 648 ntTSL 216.22■□□□□ 0.191e-6■□□□□ 8.7
YBX3P16989 HM13-212ENST00000469097 801 ntTSL 516.14■□□□□ 0.171e-6■□□□□ 8.7
YBX3P16989 TSN-206ENST00000481818 421 ntTSL 316.01■□□□□ 0.151e-6■□□□□ 8.7
YBX3P16989 SUPT20H-204ENST00000464572 2948 ntTSL 1 (best)15.5■□□□□ 0.071e-6■□□□□ 8.7
YBX3P16989 HM13-209ENST00000464661 906 ntTSL 315.35■□□□□ 0.051e-6■□□□□ 8.7
YBX3P16989 ANAPC7-206ENST00000481473 1836 ntTSL 1 (best)14.97□□□□□ -0.014e-7■□□□□ 8.7
YBX3P16989 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC14.75□□□□□ -0.051e-9■□□□□ 8.7
YBX3P16989 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.051e-6■□□□□ 8.7
YBX3P16989 SLC43A3-205ENST00000525205 862 ntTSL 314.72□□□□□ -0.051e-9■□□□□ 8.7
YBX3P16989 UBIAD1-203ENST00000483738 1393 ntTSL 314.67□□□□□ -0.061e-6■□□□□ 8.7
YBX3P16989 SDF2-209ENST00000591903 735 ntTSL 314.64□□□□□ -0.071e-6■□□□□ 8.7
YBX3P16989 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.58□□□□□ -0.081e-6■□□□□ 8.7
YBX3P16989 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC14.5□□□□□ -0.091e-9■□□□□ 8.7
YBX3P16989 AC011452.1-201ENST00000451973 575 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.191e-9■□□□□ 8.7
YBX3P16989 NUP62-217ENST00000599567 579 ntTSL 413.79□□□□□ -0.21e-9■□□□□ 8.7
YBX3P16989 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC13.77□□□□□ -0.211e-9■□□□□ 8.7
YBX3P16989 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.231e-9■□□□□ 8.7
YBX3P16989 SDF2-208ENST00000589788 1342 ntTSL 213.41□□□□□ -0.261e-6■□□□□ 8.7
YBX3P16989 HM13-214ENST00000472128 865 ntTSL 513.39□□□□□ -0.271e-6■□□□□ 8.7
YBX3P16989 PRR14-210ENST00000567989 902 ntTSL 213.38□□□□□ -0.271e-6■□□□□ 8.7
YBX3P16989 SDF2-203ENST00000585749 823 ntTSL 313.2□□□□□ -0.31e-6■□□□□ 8.7
YBX3P16989 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC13.16□□□□□ -0.31e-9■□□□□ 8.7
YBX3P16989 ANAPC7-203ENST00000455511 3045 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.324e-7■□□□□ 8.7
YBX3P16989 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC13.03□□□□□ -0.321e-9■□□□□ 8.7
YBX3P16989 CORO1C-212ENST00000549772 1710 ntTSL 1 (best) BASIC12.99□□□□□ -0.334e-7■□□□□ 8.7
YBX3P16989 RIOK3-201ENST00000339486 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.391e-9■□□□□ 8.7
YBX3P16989 CORO1C-209ENST00000547361 683 ntTSL 212.57□□□□□ -0.44e-7■□□□□ 8.7
YBX3P16989 CORO1C-218ENST00000552030 547 ntTSL 512.5□□□□□ -0.414e-7■□□□□ 8.7
YBX3P16989 NUP62-203ENST00000593652 905 ntTSL 212.38□□□□□ -0.431e-9■□□□□ 8.7
YBX3P16989 UBIAD1-202ENST00000376810 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.431e-6■□□□□ 8.7
YBX3P16989 SDF2-207ENST00000588472 681 ntTSL 211.76□□□□□ -0.531e-6■□□□□ 8.7
YBX3P16989 TSN-210ENST00000495112 605 ntTSL 411.37□□□□□ -0.591e-6■□□□□ 8.7
YBX3P16989 NUP62-207ENST00000595761 533 ntTSL 410.56□□□□□ -0.721e-9■□□□□ 8.7
YBX3P16989 SDF2-210ENST00000592250 1025 ntTSL 29.83□□□□□ -0.841e-6■□□□□ 8.7
YBX3P16989 ATP6V1D-211ENST00000555625 784 ntTSL 59.02□□□□□ -0.971e-6■□□□□ 8.7
YBX3P16989 SDF2-205ENST00000587629 775 ntTSL 38.88□□□□□ -0.991e-6■□□□□ 8.7
YBX3P16989 RIOK3-205ENST00000581302 3049 ntTSL 27.89□□□□□ -1.151e-9■□□□□ 8.7
YBX3P16989 ATP6V1D-202ENST00000553408 678 ntTSL 37.55□□□□□ -1.21e-6■□□□□ 8.7
YBX3P16989 SDF2-206ENST00000587788 444 ntTSL 36.96□□□□□ -1.31e-6■□□□□ 8.7
YBX3P16989 PPHLN1-209ENST00000546750 588 ntTSL 44.57□□□□□ -1.681e-6■□□□□ 8.7
YBX3P16989 CTSC-208ENST00000533897 4344 ntTSL 24.57□□□□□ -1.681e-6■□□□□ 8.7
YBX3P16989 AC087190.4-201ENST00000574616 8334 ntBASIC4.3□□□□□ -1.721e-6■□□□□ 8.7
YBX3P16989 CCNC-208ENST00000519617 246 ntTSL 34.12□□□□□ -1.751e-6■□□□□ 8.7
YBX3P16989 PPHLN1-212ENST00000547847 576 ntTSL 33.09□□□□□ -1.911e-6■□□□□ 8.7
YBX3P16989 TLN1-208ENST00000495712 370 ntTSL 210.08□□□□□ -0.85e-9■□□□□ 8.7
YBX3P16989 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC15.95■□□□□ 0.143e-8■□□□□ 8.7
YBX3P16989 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.253e-8■□□□□ 8.7
YBX3P16989 ZNF595-201ENST00000502981 747 ntTSL 213.12□□□□□ -0.313e-8■□□□□ 8.7
YBX3P16989 ZNF595-202ENST00000509152 1072 ntTSL 1 (best) BASIC13.12□□□□□ -0.313e-8■□□□□ 8.7
YBX3P16989 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.043e-8■□□□□ 8.7
YBX3P16989 DARS-209ENST00000478212 892 ntTSL 210.72□□□□□ -0.693e-9■□□□□ 8.7
YBX3P16989 PRKRA-207ENST00000463882 541 ntTSL 229.49■■■□□ 2.311e-8■□□□□ 8.7
YBX3P16989 PRKRA-205ENST00000457633 942 ntTSL 328.73■■■□□ 2.191e-8■□□□□ 8.7
YBX3P16989 PRKRA-202ENST00000424699 1616 ntTSL 227.46■■□□□ 1.991e-8■□□□□ 8.7
YBX3P16989 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.51e-8■□□□□ 8.7
YBX3P16989 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC24.14■■□□□ 1.461e-8■□□□□ 8.7
YBX3P16989 PRKRA-209ENST00000470200 550 ntTSL 423.92■■□□□ 1.421e-8■□□□□ 8.7
YBX3P16989 PRKRA-208ENST00000466165 585 ntTSL 223.18■■□□□ 1.31e-8■□□□□ 8.7
YBX3P16989 PRKRA-206ENST00000460433 461 ntTSL 319.07■□□□□ 0.641e-8■□□□□ 8.7
YBX3P16989 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.07■□□□□ 0.641e-8■□□□□ 8.7
YBX3P16989 PRKRA-204ENST00000448279 549 ntTSL 43.93□□□□□ -1.781e-8■□□□□ 8.7
YBX3P16989 APRT-210ENST00000568575 490 ntTSL 217.48■□□□□ 0.392e-19■□□□□ 8.7
YBX3P16989 AC073896.1-203ENST00000548360 512 ntTSL 425.04■■□□□ 1.61e-11■□□□□ 8.7
YBX3P16989 IK-201ENST00000417647 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.565e-8■□□□□ 8.7
YBX3P16989 KLF3-202ENST00000482150 517 ntTSL 218.85■□□□□ 0.613e-8■□□□□ 8.7
YBX3P16989 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.862e-8■□□□□ 8.7
YBX3P16989 TSPAN14-204ENST00000372157 855 ntTSL 526.33■■□□□ 1.812e-8■□□□□ 8.7
YBX3P16989 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC25.57■■□□□ 1.682e-8■□□□□ 8.7
YBX3P16989 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.632e-8■□□□□ 8.7
YBX3P16989 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC23.96■■□□□ 1.432e-8■□□□□ 8.7
YBX3P16989 TSPAN14-208ENST00000469149 959 ntTSL 222.9■■□□□ 1.262e-8■□□□□ 8.7
YBX3P16989 EIF3D-204ENST00000426531 710 ntTSL 212.84□□□□□ -0.352e-9■□□□□ 8.7
YBX3P16989 CCNC-213ENST00000523541 1123 ntTSL 1 (best)22.84■■□□□ 1.259e-9■□□□□ 8.7
YBX3P16989 CCNC-204ENST00000482541 1704 ntTSL 1 (best) BASIC10.36□□□□□ -0.759e-9■□□□□ 8.7
YBX3P16989 CIZ1-215ENST00000475471 836 ntTSL 216.55■□□□□ 0.248e-15■□□□□ 8.7
YBX3P16989 CIZ1-216ENST00000476239 853 ntTSL 511.52□□□□□ -0.578e-15■□□□□ 8.7
YBX3P16989 PPA1-203ENST00000460755 412 ntTSL 54.86□□□□□ -1.634e-22■□□□□ 8.7
Retrieved 100 of 29,075 protein–RNA pairs in 856.4 ms