RNA–Protein interactions for RNA: ENST00000589788.1

SDF2-208, Transcript of stromal cell derived factor 2, humanhuman

TSL 2

Gene SDF2, Length 1,342 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-208ENST00000589788 AEBP2Q6ZN18 517 aaPredicted RBP27.74■■■□□ 2.03
SDF2-208ENST00000589788 CHIC1Q5VXU3 224 aa27.57■■■□□ 2
SDF2-208ENST00000589788 NISCHQ9Y2I1 1504 aa25.12■■□□□ 1.61
SDF2-208ENST00000589788 PHF23Q9BUL5 403 aaPredicted RBP24.38■■□□□ 1.49
SDF2-208ENST00000589788 SENP3Q9H4L4 574 aaPredicted RBP23.33■■□□□ 1.32
SDF2-208ENST00000589788 PLPPR3Q6T4P5 718 aa22.57■■□□□ 1.2
SDF2-208ENST00000589788 CCDC180Q9P1Z9 1646 aa22.37■■□□□ 1.17
SDF2-208ENST00000589788 ABCC9O60706 1549 aa21.94■■□□□ 1.1
SDF2-208ENST00000589788 FOXD1Q16676 465 aa21.65■■□□□ 1.06
SDF2-208ENST00000589788 PPP6R1Q9UPN7 881 aa21.3■■□□□ 1
SDF2-208ENST00000589788 ADRA2BP18089 450 aa21.29■■□□□ 1
SDF2-208ENST00000589788 RB1CC1Q8TDY2 1594 aa21.09■□□□□ 0.97
SDF2-208ENST00000589788 DCAF8L2P0C7V8 631 aa21.07■□□□□ 0.96
SDF2-208ENST00000589788 NACADO15069 1562 aa21.04■□□□□ 0.96
SDF2-208ENST00000589788 ZCCHC6Q5VYS8 1495 aaKnown RBP20.9■□□□□ 0.94
SDF2-208ENST00000589788 MYO15BQ96JP2 1530 aa20.87■□□□□ 0.93
SDF2-208ENST00000589788 DCAF1Q9Y4B6 1507 aa20.76■□□□□ 0.91
SDF2-208ENST00000589788 UNC13AQ9UPW8 1703 aa20.6■□□□□ 0.89
SDF2-208ENST00000589788 PIAS4Q8N2W9 510 aaPredicted RBP20.5■□□□□ 0.87
SDF2-208ENST00000589788 PABPN1Q86U42 306 aaKnown RBP eCLIP20.49■□□□□ 0.87
SDF2-208ENST00000589788 SCRIBQ14160 1630 aa20.42■□□□□ 0.86
SDF2-208ENST00000589788 BICRAQ9NZM4 1560 aa20.41■□□□□ 0.86
SDF2-208ENST00000589788 KCNA4P22459 653 aa20.23■□□□□ 0.83
SDF2-208ENST00000589788 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
SDF2-208ENST00000589788 DNAJC5BQ9UF47 199 aa20.13■□□□□ 0.81
SDF2-208ENST00000589788 PPP4R3CPQ6ZMV5 832 aa19.99■□□□□ 0.79
SDF2-208ENST00000589788 EIF4G1Q04637 1599 aaKnown RBP19.9■□□□□ 0.78
SDF2-208ENST00000589788 CC2D2AQ9P2K1 1620 aa19.83■□□□□ 0.77
SDF2-208ENST00000589788 CECR2Q9BXF3 1484 aa19.71■□□□□ 0.75
SDF2-208ENST00000589788 MSH5O43196 834 aa19.65■□□□□ 0.74
SDF2-208ENST00000589788 NCBP3Q53F19 620 aaKnown RBP19.53■□□□□ 0.72
SDF2-208ENST00000589788 SMARCA4P51532 1647 aa19.51■□□□□ 0.71
SDF2-208ENST00000589788 BAZ1AQ9NRL2 1556 aaPredicted RBP19.49■□□□□ 0.71
SDF2-208ENST00000589788 ATAD2BQ9ULI0 1458 aa19.41■□□□□ 0.7
SDF2-208ENST00000589788 SMARCA2P51531 1590 aa19.4■□□□□ 0.7
SDF2-208ENST00000589788 EHMT2Q96KQ7 1210 aa19.4■□□□□ 0.7
SDF2-208ENST00000589788 NCAPD3P42695 1498 aa19.4■□□□□ 0.7
SDF2-208ENST00000589788 NPM3O75607 178 aaKnown RBP19.39■□□□□ 0.69
SDF2-208ENST00000589788 MROH2BQ7Z745 1585 aa19.35■□□□□ 0.69
SDF2-208ENST00000589788 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
SDF2-208ENST00000589788 SCAF1Q9H7N4 1312 aaKnown RBP19.31■□□□□ 0.68
SDF2-208ENST00000589788 PEG3Q9GZU2 1588 aa19.3■□□□□ 0.68
SDF2-208ENST00000589788 SLC4A1APQ9BWU0 796 aaKnown RBP19.28■□□□□ 0.68
SDF2-208ENST00000589788 CNKSR2Q8WXI2 1034 aa19.27■□□□□ 0.68
SDF2-208ENST00000589788 BAZ1BQ9UIG0 1483 aaKnown RBP19.27■□□□□ 0.68
SDF2-208ENST00000589788 WIZO95785 1651 aa19.16■□□□□ 0.66
SDF2-208ENST00000589788 MAPK8IP2Q13387 824 aaPredicted RBP19.14■□□□□ 0.65
SDF2-208ENST00000589788 POTEDQ86YR6 584 aa19.12■□□□□ 0.65
SDF2-208ENST00000589788 RSF1Q96T23 1441 aaPredicted RBP19.11■□□□□ 0.65
SDF2-208ENST00000589788 CSRNP3Q8WYN3 585 aa18.98■□□□□ 0.63
SDF2-208ENST00000589788 NESP48681 1621 aa18.96■□□□□ 0.63
SDF2-208ENST00000589788 TOP2AP11388 1531 aaKnown RBP18.95■□□□□ 0.62
SDF2-208ENST00000589788 ERCC6Q03468 1493 aa18.94■□□□□ 0.62
SDF2-208ENST00000589788 LAMC3Q9Y6N6 1575 aa18.91■□□□□ 0.62
SDF2-208ENST00000589788 CADPSQ9ULU8 1353 aa18.84■□□□□ 0.61
SDF2-208ENST00000589788 PDS5BQ9NTI5 1447 aa18.8■□□□□ 0.6
SDF2-208ENST00000589788 RNF216Q9NWF9 866 aaPredicted RBP18.78■□□□□ 0.6
SDF2-208ENST00000589788 DMRT2Q9Y5R5 561 aa18.76■□□□□ 0.59
SDF2-208ENST00000589788 KIF21AQ7Z4S6 1674 aa18.74■□□□□ 0.59
SDF2-208ENST00000589788 CCDC88BA6NC98 1476 aa18.72■□□□□ 0.59
SDF2-208ENST00000589788 CUX2O14529 1486 aa18.72■□□□□ 0.59
SDF2-208ENST00000589788 CFTRP13569 1480 aa18.71■□□□□ 0.59
SDF2-208ENST00000589788 ZBTB22O15209 634 aa18.7■□□□□ 0.58
SDF2-208ENST00000589788 THOC2Q8NI27 1593 aaKnown RBP18.68■□□□□ 0.58
SDF2-208ENST00000589788 SUPT5HO00267 1087 aaKnown RBP18.65■□□□□ 0.58
SDF2-208ENST00000589788 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
SDF2-208ENST00000589788 CEP164Q9UPV0 1460 aa18.63■□□□□ 0.57
SDF2-208ENST00000589788 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
SDF2-208ENST00000589788 PRDM2Q13029 1718 aa18.61■□□□□ 0.57
SDF2-208ENST00000589788 HOXD11P31277 338 aaPredicted RBP18.6■□□□□ 0.57
SDF2-208ENST00000589788 WDR62O43379 1518 aa18.53■□□□□ 0.56
SDF2-208ENST00000589788 URB2Q14146 1524 aaKnown RBP18.43■□□□□ 0.54
SDF2-208ENST00000589788 FOXD4L1Q9NU39 408 aa18.41■□□□□ 0.54
SDF2-208ENST00000589788 ABCC8Q09428 1581 aa18.34■□□□□ 0.53
SDF2-208ENST00000589788 TOPBP1Q92547 1522 aa18.33■□□□□ 0.52
SDF2-208ENST00000589788 DNMBPQ6XZF7 1577 aa18.31■□□□□ 0.52
SDF2-208ENST00000589788 IFT140Q96RY7 1462 aa18.22■□□□□ 0.51
SDF2-208ENST00000589788 SLC4A2P04920 1241 aa18.22■□□□□ 0.51
SDF2-208ENST00000589788 DNAJC5Q9H3Z4 198 aa18.2■□□□□ 0.5
SDF2-208ENST00000589788 CUX1P39880 1505 aa18.17■□□□□ 0.5
SDF2-208ENST00000589788 POLA1P09884 1462 aaPredicted RBP18.16■□□□□ 0.5
SDF2-208ENST00000589788 ZNF608Q9ULD9 1512 aaPredicted RBP18.13■□□□□ 0.49
SDF2-208ENST00000589788 FGD5Q6ZNL6 1462 aa18.12■□□□□ 0.49
SDF2-208ENST00000589788 TARBP1Q13395 1621 aaKnown RBP18.12■□□□□ 0.49
SDF2-208ENST00000589788 SOGA1O94964 1423 aa18.11■□□□□ 0.49
SDF2-208ENST00000589788 RAD54L2Q9Y4B4 1467 aa18.08■□□□□ 0.49
SDF2-208ENST00000589788 EIF4G3O43432 1585 aaKnown RBP18.08■□□□□ 0.48
SDF2-208ENST00000589788 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
SDF2-208ENST00000589788 AQRO60306 1485 aaKnown RBP eCLIP18.03■□□□□ 0.48
SDF2-208ENST00000589788 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
SDF2-208ENST00000589788 BIVM-ERCC5R4GMW8 1640 aa18.01■□□□□ 0.47
SDF2-208ENST00000589788 TDRD9Q8NDG6 1382 aaKnown RBP18.01■□□□□ 0.47
SDF2-208ENST00000589788 WDR97A6NE52 1622 aa17.99■□□□□ 0.47
SDF2-208ENST00000589788 SYNJ1O43426 1573 aa17.99■□□□□ 0.47
SDF2-208ENST00000589788 OSCARQ8IYS5 282 aa17.96■□□□□ 0.46
SDF2-208ENST00000589788 ABCA10Q8WWZ4 1543 aa17.93■□□□□ 0.46
SDF2-208ENST00000589788 GRIN2BQ13224 1484 aa17.9■□□□□ 0.46
SDF2-208ENST00000589788 GAPVD1Q14C86 1478 aa17.9■□□□□ 0.46
SDF2-208ENST00000589788 FBLN2P98095 1184 aa17.88■□□□□ 0.45
SDF2-208ENST00000589788 SNAPC4Q5SXM2 1469 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms