RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 NISCHQ9Y2I1 1504 aa42.25■■■■■ 4.35
CCNC-213ENST00000523541 CCDC180Q9P1Z9 1646 aa37.65■■■■□ 3.62
CCNC-213ENST00000523541 ABCC9O60706 1549 aa37.35■■■■□ 3.57
CCNC-213ENST00000523541 RB1CC1Q8TDY2 1594 aa35.68■■■■□ 3.3
CCNC-213ENST00000523541 DCAF8L2P0C7V8 631 aa35.61■■■■□ 3.29
CCNC-213ENST00000523541 NACADO15069 1562 aa35.55■■■■□ 3.28
CCNC-213ENST00000523541 MYO15BQ96JP2 1530 aa35.33■■■■□ 3.25
CCNC-213ENST00000523541 ZCCHC6Q5VYS8 1495 aaKnown RBP35.09■■■■□ 3.21
CCNC-213ENST00000523541 DCAF1Q9Y4B6 1507 aa35.03■■■■□ 3.2
CCNC-213ENST00000523541 PABPN1Q86U42 306 aaKnown RBP eCLIP34.84■■■■□ 3.17
CCNC-213ENST00000523541 UNC13AQ9UPW8 1703 aa34.81■■■■□ 3.16
CCNC-213ENST00000523541 DNAJC5BQ9UF47 199 aa34.58■■■■□ 3.13
CCNC-213ENST00000523541 BICRAQ9NZM4 1560 aa34.52■■■■□ 3.12
CCNC-213ENST00000523541 SCRIBQ14160 1630 aa34.39■■■■□ 3.1
CCNC-213ENST00000523541 SHROOM4Q9ULL8 1493 aa34.28■■■■□ 3.08
CCNC-213ENST00000523541 EIF4G1Q04637 1599 aaKnown RBP33.71■■■□□ 2.99
CCNC-213ENST00000523541 CC2D2AQ9P2K1 1620 aa33.71■■■□□ 2.99
CCNC-213ENST00000523541 CECR2Q9BXF3 1484 aa33.58■■■□□ 2.97
CCNC-213ENST00000523541 NCAPD3P42695 1498 aa32.86■■■□□ 2.85
CCNC-213ENST00000523541 BAZ1AQ9NRL2 1556 aaPredicted RBP32.78■■■□□ 2.84
CCNC-213ENST00000523541 SMARCA4P51532 1647 aa32.77■■■□□ 2.84
CCNC-213ENST00000523541 ATAD2BQ9ULI0 1458 aa32.75■■■□□ 2.83
CCNC-213ENST00000523541 SMARCA2P51531 1590 aa32.72■■■□□ 2.83
CCNC-213ENST00000523541 HMGXB3Q12766 1538 aa32.59■■■□□ 2.81
CCNC-213ENST00000523541 PEG3Q9GZU2 1588 aa32.55■■■□□ 2.8
CCNC-213ENST00000523541 MROH2BQ7Z745 1585 aa32.48■■■□□ 2.79
CCNC-213ENST00000523541 BAZ1BQ9UIG0 1483 aaKnown RBP32.48■■■□□ 2.79
CCNC-213ENST00000523541 ERCC6Q03468 1493 aa32.29■■■□□ 2.76
CCNC-213ENST00000523541 NESP48681 1621 aa32.14■■■□□ 2.74
CCNC-213ENST00000523541 WIZO95785 1651 aa32.1■■■□□ 2.73
CCNC-213ENST00000523541 RSF1Q96T23 1441 aaPredicted RBP32.08■■■□□ 2.73
CCNC-213ENST00000523541 CUX2O14529 1486 aa31.98■■■□□ 2.71
CCNC-213ENST00000523541 LAMC3Q9Y6N6 1575 aa31.97■■■□□ 2.71
CCNC-213ENST00000523541 CADPSQ9ULU8 1353 aa31.88■■■□□ 2.69
CCNC-213ENST00000523541 PDS5BQ9NTI5 1447 aa31.84■■■□□ 2.69
CCNC-213ENST00000523541 TOP2AP11388 1531 aaKnown RBP31.79■■■□□ 2.68
CCNC-213ENST00000523541 KIF21AQ7Z4S6 1674 aa31.76■■■□□ 2.67
CCNC-213ENST00000523541 THOC2Q8NI27 1593 aaKnown RBP31.7■■■□□ 2.67
CCNC-213ENST00000523541 CFTRP13569 1480 aa31.59■■■□□ 2.65
CCNC-213ENST00000523541 DNAJC5Q9H3Z4 198 aa31.53■■■□□ 2.64
CCNC-213ENST00000523541 MRC2Q9UBG0 1479 aa31.5■■■□□ 2.63
CCNC-213ENST00000523541 CEP164Q9UPV0 1460 aa31.48■■■□□ 2.63
CCNC-213ENST00000523541 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
CCNC-213ENST00000523541 CCDC88BA6NC98 1476 aa31.45■■■□□ 2.62
CCNC-213ENST00000523541 WDR62O43379 1518 aa31.36■■■□□ 2.61
CCNC-213ENST00000523541 PRDM2Q13029 1718 aa31.22■■■□□ 2.59
CCNC-213ENST00000523541 URB2Q14146 1524 aaKnown RBP31.13■■■□□ 2.57
CCNC-213ENST00000523541 ABCC8Q09428 1581 aa31■■■□□ 2.55
CCNC-213ENST00000523541 SUPT5HO00267 1087 aaKnown RBP31■■■□□ 2.55
CCNC-213ENST00000523541 TOPBP1Q92547 1522 aa30.88■■■□□ 2.53
CCNC-213ENST00000523541 IFT140Q96RY7 1462 aa30.82■■■□□ 2.53
CCNC-213ENST00000523541 DNMBPQ6XZF7 1577 aa30.81■■■□□ 2.52
CCNC-213ENST00000523541 ZNF608Q9ULD9 1512 aaPredicted RBP30.7■■■□□ 2.51
CCNC-213ENST00000523541 OSCARQ8IYS5 282 aa30.64■■■□□ 2.5
CCNC-213ENST00000523541 POLA1P09884 1462 aaPredicted RBP30.59■■■□□ 2.49
CCNC-213ENST00000523541 EIF4G3O43432 1585 aaKnown RBP30.58■■■□□ 2.49
CCNC-213ENST00000523541 SOGA1O94964 1423 aa30.54■■■□□ 2.48
CCNC-213ENST00000523541 TARBP1Q13395 1621 aaKnown RBP30.53■■■□□ 2.48
CCNC-213ENST00000523541 TRIM41Q8WV44 630 aa30.5■■■□□ 2.47
CCNC-213ENST00000523541 AQRO60306 1485 aaKnown RBP eCLIP30.5■■■□□ 2.47
CCNC-213ENST00000523541 CUX1P39880 1505 aa30.49■■■□□ 2.47
CCNC-213ENST00000523541 RAD54L2Q9Y4B4 1467 aa30.49■■■□□ 2.47
CCNC-213ENST00000523541 FGD5Q6ZNL6 1462 aa30.47■■■□□ 2.47
CCNC-213ENST00000523541 WDR97A6NE52 1622 aa30.39■■■□□ 2.46
CCNC-213ENST00000523541 TDRD9Q8NDG6 1382 aaKnown RBP30.39■■■□□ 2.45
CCNC-213ENST00000523541 FBLN2P98095 1184 aa30.38■■■□□ 2.45
CCNC-213ENST00000523541 CHD1O14646 1710 aa30.29■■■□□ 2.44
CCNC-213ENST00000523541 WRNQ14191 1432 aaPredicted RBP eCLIP30.26■■■□□ 2.43
CCNC-213ENST00000523541 ABCA10Q8WWZ4 1543 aa30.22■■■□□ 2.43
CCNC-213ENST00000523541 SNAPC4Q5SXM2 1469 aa30.21■■■□□ 2.43
CCNC-213ENST00000523541 GRIN2BQ13224 1484 aa30.2■■■□□ 2.43
CCNC-213ENST00000523541 TOP2BQ02880 1626 aa30.18■■■□□ 2.42
CCNC-213ENST00000523541 RIMBP3CA6NJZ7 1639 aa30.17■■■□□ 2.42
CCNC-213ENST00000523541 RIMBP3BA6NNM3 1639 aa30.17■■■□□ 2.42
CCNC-213ENST00000523541 RIMBP3Q9UFD9 1639 aa30.17■■■□□ 2.42
CCNC-213ENST00000523541 MAGI1Q96QZ7 1491 aaPredicted RBP30.16■■■□□ 2.42
CCNC-213ENST00000523541 CHMP7Q8WUX9 453 aaPredicted RBP30.15■■■□□ 2.42
CCNC-213ENST00000523541 BIVM-ERCC5R4GMW8 1640 aa30.14■■■□□ 2.42
CCNC-213ENST00000523541 GAPVD1Q14C86 1478 aa30.14■■■□□ 2.42
CCNC-213ENST00000523541 ARHGEF11O15085 1522 aa30.11■■■□□ 2.41
CCNC-213ENST00000523541 PBRM1Q86U86 1689 aa30.09■■■□□ 2.41
CCNC-213ENST00000523541 SYNJ1O43426 1573 aa30.07■■■□□ 2.4
CCNC-213ENST00000523541 SYNJ2O15056 1496 aa30.03■■■□□ 2.4
CCNC-213ENST00000523541 ABCA5Q8WWZ7 1642 aa30.02■■■□□ 2.4
CCNC-213ENST00000523541 CYB5RLQ6IPT4 315 aa29.95■■■□□ 2.39
CCNC-213ENST00000523541 CLASP1Q7Z460 1538 aa29.88■■■□□ 2.37
CCNC-213ENST00000523541 ERICH3Q5RHP9 1530 aa29.86■■■□□ 2.37
CCNC-213ENST00000523541 FHAD1B1AJZ9 1412 aa29.82■■■□□ 2.36
CCNC-213ENST00000523541 ARAP1Q96P48 1450 aa29.81■■■□□ 2.36
CCNC-213ENST00000523541 ADAMTS12P58397 1594 aa29.8■■■□□ 2.36
CCNC-213ENST00000523541 GRIN2AQ12879 1464 aa29.77■■■□□ 2.36
CCNC-213ENST00000523541 KIF27Q86VH2 1401 aa29.7■■■□□ 2.34
CCNC-213ENST00000523541 NUP160Q12769 1436 aa29.69■■■□□ 2.34
CCNC-213ENST00000523541 CEP170Q5SW79 1584 aa29.63■■■□□ 2.33
CCNC-213ENST00000523541 IGF1RP08069 1367 aa29.63■■■□□ 2.33
CCNC-213ENST00000523541 TRHP20396 242 aaPredicted RBP29.59■■■□□ 2.33
CCNC-213ENST00000523541 ERCC6L2Q5T890 1561 aa29.47■■■□□ 2.31
CCNC-213ENST00000523541 CUL7Q14999 1698 aa29.47■■■□□ 2.31
CCNC-213ENST00000523541 JPH4Q96JJ6 628 aa29.46■■■□□ 2.31
CCNC-213ENST00000523541 CARMIL1Q5VZK9 1371 aa29.43■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms