RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 NISCHQ9Y2I1 1504 aa32.37■■■□□ 2.77
SDF2-201ENST00000247020 CCDC180Q9P1Z9 1646 aa28.4■■■□□ 2.14
SDF2-201ENST00000247020 ZCCHC6Q5VYS8 1495 aaKnown RBP27.22■■□□□ 1.95
SDF2-201ENST00000247020 DCAF1Q9Y4B6 1507 aa26.9■■□□□ 1.9
SDF2-201ENST00000247020 MYO15BQ96JP2 1530 aa26.62■■□□□ 1.85
SDF2-201ENST00000247020 ABCC9O60706 1549 aa26.59■■□□□ 1.85
SDF2-201ENST00000247020 DCAF8L2P0C7V8 631 aa26.46■■□□□ 1.83
SDF2-201ENST00000247020 NACADO15069 1562 aa26.38■■□□□ 1.81
SDF2-201ENST00000247020 RB1CC1Q8TDY2 1594 aa26.15■■□□□ 1.78
SDF2-201ENST00000247020 SHROOM4Q9ULL8 1493 aa26.12■■□□□ 1.77
SDF2-201ENST00000247020 SCRIBQ14160 1630 aa25.9■■□□□ 1.74
SDF2-201ENST00000247020 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
SDF2-201ENST00000247020 BICRAQ9NZM4 1560 aa25.3■■□□□ 1.64
SDF2-201ENST00000247020 SUPT5HO00267 1087 aaKnown RBP25.14■■□□□ 1.61
SDF2-201ENST00000247020 BAZ1AQ9NRL2 1556 aaPredicted RBP25.05■■□□□ 1.6
SDF2-201ENST00000247020 RSF1Q96T23 1441 aaPredicted RBP25.04■■□□□ 1.6
SDF2-201ENST00000247020 CECR2Q9BXF3 1484 aa25.04■■□□□ 1.6
SDF2-201ENST00000247020 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
SDF2-201ENST00000247020 MROH2BQ7Z745 1585 aa24.94■■□□□ 1.58
SDF2-201ENST00000247020 SMARCA4P51532 1647 aa24.92■■□□□ 1.58
SDF2-201ENST00000247020 WIZO95785 1651 aa24.76■■□□□ 1.55
SDF2-201ENST00000247020 PEG3Q9GZU2 1588 aa24.69■■□□□ 1.54
SDF2-201ENST00000247020 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
SDF2-201ENST00000247020 EIF4G1Q04637 1599 aaKnown RBP24.54■■□□□ 1.52
SDF2-201ENST00000247020 SMARCA2P51531 1590 aa24.54■■□□□ 1.52
SDF2-201ENST00000247020 ATAD2BQ9ULI0 1458 aa24.46■■□□□ 1.51
SDF2-201ENST00000247020 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
SDF2-201ENST00000247020 BAZ1BQ9UIG0 1483 aaKnown RBP24.33■■□□□ 1.49
SDF2-201ENST00000247020 NCAPD3P42695 1498 aa24.3■■□□□ 1.48
SDF2-201ENST00000247020 CCDC88BA6NC98 1476 aa24.23■■□□□ 1.47
SDF2-201ENST00000247020 CC2D2AQ9P2K1 1620 aa24.17■■□□□ 1.46
SDF2-201ENST00000247020 CHIC1Q5VXU3 224 aa24.14■■□□□ 1.45
SDF2-201ENST00000247020 PRDM2Q13029 1718 aa23.79■■□□□ 1.4
SDF2-201ENST00000247020 CFTRP13569 1480 aa23.74■■□□□ 1.39
SDF2-201ENST00000247020 TRIM41Q8WV44 630 aa23.73■■□□□ 1.39
SDF2-201ENST00000247020 ABCC8Q09428 1581 aa23.68■■□□□ 1.38
SDF2-201ENST00000247020 CADPSQ9ULU8 1353 aa23.62■■□□□ 1.37
SDF2-201ENST00000247020 WRNQ14191 1432 aaPredicted RBP eCLIP23.59■■□□□ 1.37
SDF2-201ENST00000247020 LAMC3Q9Y6N6 1575 aa23.53■■□□□ 1.36
SDF2-201ENST00000247020 BIVM-ERCC5R4GMW8 1640 aa23.5■■□□□ 1.35
SDF2-201ENST00000247020 SYNJ1O43426 1573 aa23.49■■□□□ 1.35
SDF2-201ENST00000247020 TOP2BQ02880 1626 aa23.48■■□□□ 1.35
SDF2-201ENST00000247020 FANCD2Q9BXW9 1451 aa23.35■■□□□ 1.33
SDF2-201ENST00000247020 DNAJC5BQ9UF47 199 aa23.35■■□□□ 1.33
SDF2-201ENST00000247020 EEA1Q15075 1411 aa23.34■■□□□ 1.33
SDF2-201ENST00000247020 CUX1P39880 1505 aa23.34■■□□□ 1.33
SDF2-201ENST00000247020 NESP48681 1621 aa23.33■■□□□ 1.33
SDF2-201ENST00000247020 PDS5BQ9NTI5 1447 aa23.28■■□□□ 1.32
SDF2-201ENST00000247020 CEP164Q9UPV0 1460 aa23.25■■□□□ 1.31
SDF2-201ENST00000247020 DNMBPQ6XZF7 1577 aa23.22■■□□□ 1.31
SDF2-201ENST00000247020 SOGA1O94964 1423 aa23.2■■□□□ 1.3
SDF2-201ENST00000247020 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
SDF2-201ENST00000247020 FAM9AQ8IZU1 332 aaPredicted RBP23.15■■□□□ 1.3
SDF2-201ENST00000247020 TOPBP1Q92547 1522 aa23.12■■□□□ 1.29
SDF2-201ENST00000247020 LOC105371045A0A1W2PR82 267 aa23.1■■□□□ 1.29
SDF2-201ENST00000247020 RUSC2Q8N2Y8 1516 aa23.09■■□□□ 1.29
SDF2-201ENST00000247020 FGD5Q6ZNL6 1462 aa23.09■■□□□ 1.29
SDF2-201ENST00000247020 URB2Q14146 1524 aaKnown RBP23.06■■□□□ 1.28
SDF2-201ENST00000247020 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
SDF2-201ENST00000247020 KIF21BO75037 1637 aa23.04■■□□□ 1.28
SDF2-201ENST00000247020 KIF27Q86VH2 1401 aa23.02■■□□□ 1.28
SDF2-201ENST00000247020 POLA1P09884 1462 aaPredicted RBP22.99■■□□□ 1.27
SDF2-201ENST00000247020 MRC2Q9UBG0 1479 aa22.98■■□□□ 1.27
SDF2-201ENST00000247020 GOLGA3Q08378 1498 aa22.95■■□□□ 1.26
SDF2-201ENST00000247020 ABCA10Q8WWZ4 1543 aa22.95■■□□□ 1.26
SDF2-201ENST00000247020 WDR97A6NE52 1622 aa22.95■■□□□ 1.26
SDF2-201ENST00000247020 CUX2O14529 1486 aa22.91■■□□□ 1.26
SDF2-201ENST00000247020 WDR62O43379 1518 aa22.9■■□□□ 1.26
SDF2-201ENST00000247020 ERICH3Q5RHP9 1530 aa22.9■■□□□ 1.26
SDF2-201ENST00000247020 PRXQ9BXM0 1461 aa22.86■■□□□ 1.25
SDF2-201ENST00000247020 TNIKQ9UKE5 1360 aa22.86■■□□□ 1.25
SDF2-201ENST00000247020 ERCC6Q03468 1493 aa22.85■■□□□ 1.25
SDF2-201ENST00000247020 RAD54L2Q9Y4B4 1467 aa22.84■■□□□ 1.25
SDF2-201ENST00000247020 THOC2Q8NI27 1593 aaKnown RBP22.84■■□□□ 1.25
SDF2-201ENST00000247020 TARBP1Q13395 1621 aaKnown RBP22.82■■□□□ 1.24
SDF2-201ENST00000247020 ABCA5Q8WWZ7 1642 aa22.79■■□□□ 1.24
SDF2-201ENST00000247020 RAPGEF2Q9Y4G8 1499 aa22.77■■□□□ 1.24
SDF2-201ENST00000247020 CUL7Q14999 1698 aa22.76■■□□□ 1.23
SDF2-201ENST00000247020 IGF1RP08069 1367 aa22.75■■□□□ 1.23
SDF2-201ENST00000247020 EHMT2Q96KQ7 1210 aa22.72■■□□□ 1.23
SDF2-201ENST00000247020 IFT140Q96RY7 1462 aa22.71■■□□□ 1.23
SDF2-201ENST00000247020 CEP162Q5TB80 1403 aa22.69■■□□□ 1.22
SDF2-201ENST00000247020 UBTFP17480 764 aaKnown RBP22.69■■□□□ 1.22
SDF2-201ENST00000247020 GAPVD1Q14C86 1478 aa22.67■■□□□ 1.22
SDF2-201ENST00000247020 CARMIL1Q5VZK9 1371 aa22.65■■□□□ 1.22
SDF2-201ENST00000247020 PBRM1Q86U86 1689 aa22.64■■□□□ 1.21
SDF2-201ENST00000247020 TDRD9Q8NDG6 1382 aaKnown RBP22.59■■□□□ 1.21
SDF2-201ENST00000247020 CLIP1P30622 1438 aa22.53■■□□□ 1.2
SDF2-201ENST00000247020 GRIN2BQ13224 1484 aa22.53■■□□□ 1.2
SDF2-201ENST00000247020 EIF4G3O43432 1585 aaKnown RBP22.51■■□□□ 1.19
SDF2-201ENST00000247020 CTTNBP2Q8WZ74 1663 aa22.5■■□□□ 1.19
SDF2-201ENST00000247020 ADAMTS12P58397 1594 aa22.48■■□□□ 1.19
SDF2-201ENST00000247020 AQRO60306 1485 aaKnown RBP eCLIP22.48■■□□□ 1.192e-8■■■□□ 18.6
SDF2-201ENST00000247020 ZNF608Q9ULD9 1512 aaPredicted RBP22.47■■□□□ 1.19
SDF2-201ENST00000247020 FHAD1B1AJZ9 1412 aa22.45■■□□□ 1.19
SDF2-201ENST00000247020 MAGI1Q96QZ7 1491 aaPredicted RBP22.38■■□□□ 1.17
SDF2-201ENST00000247020 VPS8Q8N3P4 1428 aa22.37■■□□□ 1.17
SDF2-201ENST00000247020 SNAPC4Q5SXM2 1469 aa22.33■■□□□ 1.17
SDF2-201ENST00000247020 EFCAB5A4FU69 1503 aa22.33■■□□□ 1.16
SDF2-201ENST00000247020 ARAP1Q96P48 1450 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms