RNA–Protein interactions for RNA: ENST00000588472.6

SDF2-207, Transcript of stromal cell derived factor 2, humanhuman

TSL 2

Gene SDF2, Length 681 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-207ENST00000588472 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
SDF2-207ENST00000588472 ABCC9O60706 1549 aa19.24■□□□□ 0.67
SDF2-207ENST00000588472 CCDC180Q9P1Z9 1646 aa19.14■□□□□ 0.65
SDF2-207ENST00000588472 DNAJC5BQ9UF47 199 aa18.32■□□□□ 0.52
SDF2-207ENST00000588472 DCAF8L2P0C7V8 631 aa18.29■□□□□ 0.52
SDF2-207ENST00000588472 RB1CC1Q8TDY2 1594 aa18.15■□□□□ 0.5
SDF2-207ENST00000588472 NACADO15069 1562 aa18.05■□□□□ 0.48
SDF2-207ENST00000588472 PABPN1Q86U42 306 aaKnown RBP eCLIP17.88■□□□□ 0.45
SDF2-207ENST00000588472 ZCCHC6Q5VYS8 1495 aaKnown RBP17.87■□□□□ 0.45
SDF2-207ENST00000588472 MYO15BQ96JP2 1530 aa17.82■□□□□ 0.44
SDF2-207ENST00000588472 UNC13AQ9UPW8 1703 aa17.72■□□□□ 0.43
SDF2-207ENST00000588472 DCAF1Q9Y4B6 1507 aa17.72■□□□□ 0.43
SDF2-207ENST00000588472 BICRAQ9NZM4 1560 aa17.58■□□□□ 0.41
SDF2-207ENST00000588472 SCRIBQ14160 1630 aa17.58■□□□□ 0.4
SDF2-207ENST00000588472 SHROOM4Q9ULL8 1493 aa17.38■□□□□ 0.37
SDF2-207ENST00000588472 CECR2Q9BXF3 1484 aa17.37■□□□□ 0.37
SDF2-207ENST00000588472 CC2D2AQ9P2K1 1620 aa17.32■□□□□ 0.36
SDF2-207ENST00000588472 EIF4G1Q04637 1599 aaKnown RBP17.21■□□□□ 0.35
SDF2-207ENST00000588472 DNAJC5Q9H3Z4 198 aa17.11■□□□□ 0.33
SDF2-207ENST00000588472 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
SDF2-207ENST00000588472 CUX2O14529 1486 aa16.73■□□□□ 0.27
SDF2-207ENST00000588472 ATAD2BQ9ULI0 1458 aa16.69■□□□□ 0.26
SDF2-207ENST00000588472 BAZ1AQ9NRL2 1556 aaPredicted RBP16.68■□□□□ 0.26
SDF2-207ENST00000588472 ERCC6Q03468 1493 aa16.67■□□□□ 0.26
SDF2-207ENST00000588472 NCAPD3P42695 1498 aa16.67■□□□□ 0.26
SDF2-207ENST00000588472 SMARCA2P51531 1590 aa16.64■□□□□ 0.25
SDF2-207ENST00000588472 MROH2BQ7Z745 1585 aa16.63■□□□□ 0.25
SDF2-207ENST00000588472 BAZ1BQ9UIG0 1483 aaKnown RBP16.57■□□□□ 0.24
SDF2-207ENST00000588472 HMGXB3Q12766 1538 aa16.55■□□□□ 0.24
SDF2-207ENST00000588472 PEG3Q9GZU2 1588 aa16.5■□□□□ 0.23
SDF2-207ENST00000588472 WIZO95785 1651 aa16.46■□□□□ 0.23
SDF2-207ENST00000588472 AEBP2Q6ZN18 517 aaPredicted RBP16.45■□□□□ 0.22
SDF2-207ENST00000588472 NESP48681 1621 aa16.41■□□□□ 0.22
SDF2-207ENST00000588472 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
SDF2-207ENST00000588472 THOC2Q8NI27 1593 aaKnown RBP16.28■□□□□ 0.2
SDF2-207ENST00000588472 TRIM41Q8WV44 630 aa16.26■□□□□ 0.19
SDF2-207ENST00000588472 LAMC3Q9Y6N6 1575 aa16.26■□□□□ 0.19
SDF2-207ENST00000588472 CADPSQ9ULU8 1353 aa16.23■□□□□ 0.19
SDF2-207ENST00000588472 PDS5BQ9NTI5 1447 aa16.22■□□□□ 0.19
SDF2-207ENST00000588472 TOP2AP11388 1531 aaKnown RBP16.21■□□□□ 0.19
SDF2-207ENST00000588472 KIF21AQ7Z4S6 1674 aa16.16■□□□□ 0.18
SDF2-207ENST00000588472 CCDC88BA6NC98 1476 aa16.08■□□□□ 0.16
SDF2-207ENST00000588472 MRC2Q9UBG0 1479 aa16.07■□□□□ 0.16
SDF2-207ENST00000588472 CFTRP13569 1480 aa16.06■□□□□ 0.16
SDF2-207ENST00000588472 FANCD2Q9BXW9 1451 aa16.04■□□□□ 0.16
SDF2-207ENST00000588472 CEP164Q9UPV0 1460 aa16.03■□□□□ 0.16
SDF2-207ENST00000588472 SUPT5HO00267 1087 aaKnown RBP16.03■□□□□ 0.16
SDF2-207ENST00000588472 WDR62O43379 1518 aa16.01■□□□□ 0.15
SDF2-207ENST00000588472 OSCARQ8IYS5 282 aa15.95■□□□□ 0.14
SDF2-207ENST00000588472 URB2Q14146 1524 aaKnown RBP15.89■□□□□ 0.13
SDF2-207ENST00000588472 PRDM2Q13029 1718 aa15.88■□□□□ 0.13
SDF2-207ENST00000588472 TOPBP1Q92547 1522 aa15.76■□□□□ 0.11
SDF2-207ENST00000588472 ABCC8Q09428 1581 aa15.71■□□□□ 0.11
SDF2-207ENST00000588472 DNMBPQ6XZF7 1577 aa15.7■□□□□ 0.1
SDF2-207ENST00000588472 RIMBP3CA6NJZ7 1639 aa15.69■□□□□ 0.1
SDF2-207ENST00000588472 RIMBP3BA6NNM3 1639 aa15.69■□□□□ 0.1
SDF2-207ENST00000588472 RIMBP3Q9UFD9 1639 aa15.69■□□□□ 0.1
SDF2-207ENST00000588472 IFT140Q96RY7 1462 aa15.68■□□□□ 0.1
SDF2-207ENST00000588472 ZNF608Q9ULD9 1512 aaPredicted RBP15.68■□□□□ 0.1
SDF2-207ENST00000588472 ARHGEF11O15085 1522 aa15.63■□□□□ 0.09
SDF2-207ENST00000588472 POLA1P09884 1462 aaPredicted RBP15.61■□□□□ 0.09
SDF2-207ENST00000588472 RAD54L2Q9Y4B4 1467 aa15.6■□□□□ 0.09
SDF2-207ENST00000588472 CUX1P39880 1505 aa15.6■□□□□ 0.09
SDF2-207ENST00000588472 CYB5RLQ6IPT4 315 aa15.6■□□□□ 0.09
SDF2-207ENST00000588472 SOGA1O94964 1423 aa15.6■□□□□ 0.09
SDF2-207ENST00000588472 AQRO60306 1485 aaKnown RBP eCLIP15.59■□□□□ 0.092e-8■■■□□ 18.6
SDF2-207ENST00000588472 FGD5Q6ZNL6 1462 aa15.58■□□□□ 0.08
SDF2-207ENST00000588472 TARBP1Q13395 1621 aaKnown RBP15.57■□□□□ 0.08
SDF2-207ENST00000588472 TRHP20396 242 aaPredicted RBP15.57■□□□□ 0.08
SDF2-207ENST00000588472 EIF4G3O43432 1585 aaKnown RBP15.56■□□□□ 0.08
SDF2-207ENST00000588472 TDRD9Q8NDG6 1382 aaKnown RBP15.55■□□□□ 0.08
SDF2-207ENST00000588472 FBLN2P98095 1184 aa15.53■□□□□ 0.08
SDF2-207ENST00000588472 ARAP1Q96P48 1450 aa15.46■□□□□ 0.07
SDF2-207ENST00000588472 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
SDF2-207ENST00000588472 SYNJ1O43426 1573 aa15.41■□□□□ 0.06
SDF2-207ENST00000588472 SNAPC4Q5SXM2 1469 aa15.41■□□□□ 0.06
SDF2-207ENST00000588472 CHD1O14646 1710 aa15.4■□□□□ 0.06
SDF2-207ENST00000588472 CHMP7Q8WUX9 453 aaPredicted RBP15.4■□□□□ 0.06
SDF2-207ENST00000588472 GAPVD1Q14C86 1478 aa15.4■□□□□ 0.06
SDF2-207ENST00000588472 TOP2BQ02880 1626 aa15.39■□□□□ 0.05
SDF2-207ENST00000588472 GRIN2BQ13224 1484 aa15.39■□□□□ 0.05
SDF2-207ENST00000588472 WDR97A6NE52 1622 aa15.38■□□□□ 0.05
SDF2-207ENST00000588472 BIVM-ERCC5R4GMW8 1640 aa15.38■□□□□ 0.05
SDF2-207ENST00000588472 ABCA10Q8WWZ4 1543 aa15.37■□□□□ 0.05
SDF2-207ENST00000588472 CHIC1Q5VXU3 224 aa15.35■□□□□ 0.05
SDF2-207ENST00000588472 PBRM1Q86U86 1689 aa15.34■□□□□ 0.05
SDF2-207ENST00000588472 MAGI1Q96QZ7 1491 aaPredicted RBP15.33■□□□□ 0.05
SDF2-207ENST00000588472 ABCA5Q8WWZ7 1642 aa15.32■□□□□ 0.04
SDF2-207ENST00000588472 SYNJ2O15056 1496 aa15.29■□□□□ 0.04
SDF2-207ENST00000588472 CLASP1Q7Z460 1538 aa15.26■□□□□ 0.03
SDF2-207ENST00000588472 ADAMTS12P58397 1594 aa15.19■□□□□ 0.02
SDF2-207ENST00000588472 GRIN2AQ12879 1464 aa15.19■□□□□ 0.02
SDF2-207ENST00000588472 FHAD1B1AJZ9 1412 aa15.18■□□□□ 0.02
SDF2-207ENST00000588472 ERICH3Q5RHP9 1530 aa15.18■□□□□ 0.02
SDF2-207ENST00000588472 KIF27Q86VH2 1401 aa15.15■□□□□ 0.02
SDF2-207ENST00000588472 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
SDF2-207ENST00000588472 IGF1RP08069 1367 aa15.11■□□□□ 0.01
SDF2-207ENST00000588472 NUP160Q12769 1436 aa15.09■□□□□ 0.01
SDF2-207ENST00000588472 ERCC6L2Q5T890 1561 aa15.05■□□□□ -0
SDF2-207ENST00000588472 JPH4Q96JJ6 628 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms