Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 CIRBP-219ENST00000588411 619 ntTSL 524.74■■□□□ 1.552e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-205ENST00000585913 833 ntTSL 324.58■■□□□ 1.532e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.24■■□□□ 1.472e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-224ENST00000589686 532 ntTSL 223.7■■□□□ 1.382e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.38■■□□□ 1.332e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-226ENST00000590171 905 ntTSL 323.38■■□□□ 1.332e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-234ENST00000591659 587 ntTSL 223.38■■□□□ 1.332e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-229ENST00000590704 1456 ntTSL 223.37■■□□□ 1.332e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.23■■□□□ 1.312e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.14■■□□□ 1.292e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-208ENST00000586548 1734 ntTSL 322.97■■□□□ 1.272e-8■□□□□ 8.6
LIN28BQ6ZN17 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC22.76■■□□□ 1.232e-6■□□□□ 8.6
LIN28BQ6ZN17 DCUN1D5-206ENST00000529076 482 ntTSL 322.68■■□□□ 1.222e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.26■■□□□ 1.152e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC22.15■■□□□ 1.142e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.56■■□□□ 1.042e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-238ENST00000592412 532 ntTSL 421.31■■□□□ 12e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.17■□□□□ 0.982e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-210ENST00000586636 938 ntTSL 221.05■□□□□ 0.962e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-232ENST00000591376 830 ntTSL 321.05■□□□□ 0.962e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-237ENST00000592234 571 ntTSL 521.05■□□□□ 0.962e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.932e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.84■□□□□ 0.932e-8■□□□□ 8.6
LIN28BQ6ZN17 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.912e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-243ENST00000593128 796 ntTSL 320.6■□□□□ 0.892e-8■□□□□ 8.6
LIN28BQ6ZN17 CD151-220ENST00000532045 1803 ntTSL 520.31■□□□□ 0.842e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.13■□□□□ 0.812e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-244ENST00000593283 758 ntTSL 520.11■□□□□ 0.812e-8■□□□□ 8.6
LIN28BQ6ZN17 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.782e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.81■□□□□ 0.762e-8■□□□□ 8.6
LIN28BQ6ZN17 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.64■□□□□ 0.732e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-206ENST00000585914 1052 ntTSL 519.63■□□□□ 0.732e-8■□□□□ 8.6
LIN28BQ6ZN17 DDX6-205ENST00000533239 738 ntTSL 219.16■□□□□ 0.662e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.582e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-241ENST00000593048 650 ntTSL 318.46■□□□□ 0.552e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-240ENST00000592815 334 ntTSL 418.42■□□□□ 0.542e-8■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-230ENST00000591055 928 ntTSL 218.16■□□□□ 0.52e-8■□□□□ 8.6
LIN28BQ6ZN17 PSMA6-212ENST00000556167 601 ntTSL 217.97■□□□□ 0.472e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-212ENST00000587169 3028 ntTSL 216.21■□□□□ 0.182e-8■□□□□ 8.6
LIN28BQ6ZN17 PSMA6-208ENST00000554843 655 ntTSL 216.15■□□□□ 0.182e-6■□□□□ 8.6
LIN28BQ6ZN17 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC15.14■□□□□ 0.012e-6■□□□□ 8.6
LIN28BQ6ZN17 CD151-218ENST00000530726 1407 ntTSL 515.03■□□□□ -02e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-228ENST00000590347 3117 ntTSL 213.97□□□□□ -0.172e-8■□□□□ 8.6
LIN28BQ6ZN17 MED8-201ENST00000290663 1483 ntTSL 5 BASIC13.26□□□□□ -0.292e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-242ENST00000593093 3528 ntTSL 213.23□□□□□ -0.292e-8■□□□□ 8.6
LIN28BQ6ZN17 MED8-202ENST00000372455 1186 ntTSL 1 (best) BASIC11.23□□□□□ -0.612e-6■□□□□ 8.6
LIN28BQ6ZN17 DDX6-201ENST00000525082 1232 ntTSL 210.88□□□□□ -0.672e-6■□□□□ 8.6
LIN28BQ6ZN17 MED8-203ENST00000372457 1924 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.692e-6■□□□□ 8.6
LIN28BQ6ZN17 CD151-205ENST00000525181 364 ntTSL 310.52□□□□□ -0.732e-6■□□□□ 8.6
LIN28BQ6ZN17 CIRBP-218ENST00000588344 370 ntTSL 39.93□□□□□ -0.822e-8■□□□□ 8.6
LIN28BQ6ZN17 MED8-205ENST00000473560 979 ntTSL 38.51□□□□□ -1.052e-6■□□□□ 8.6
LIN28BQ6ZN17 MED8-204ENST00000460803 710 ntTSL 28.41□□□□□ -1.062e-6■□□□□ 8.6
LIN28BQ6ZN17 DDX6-204ENST00000531971 4373 ntTSL 37.49□□□□□ -1.212e-6■□□□□ 8.6
LIN28BQ6ZN17 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.63□□□□□ -1.352e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-225ENST00000454813 621 ntTSL 36.5□□□□□ -1.372e-8■□□□□ 8.6
LIN28BQ6ZN17 GAS5-207ENST00000422207 643 ntTSL 26.37□□□□□ -1.392e-8■□□□□ 8.6
LIN28BQ6ZN17 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.12■■□□□ 1.134e-6■□□□□ 8.6
LIN28BQ6ZN17 MRPL11-206ENST00000534488 812 ntTSL 221.59■■□□□ 1.054e-6■□□□□ 8.6
LIN28BQ6ZN17 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.84e-6■□□□□ 8.6
LIN28BQ6ZN17 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.12■□□□□ 0.654e-6■□□□□ 8.6
LIN28BQ6ZN17 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.7■□□□□ 0.584e-6■□□□□ 8.6
LIN28BQ6ZN17 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.586e-8■□□□□ 8.6
LIN28BQ6ZN17 GRHPR-204ENST00000480596 1893 ntTSL 218.6■□□□□ 0.576e-8■□□□□ 8.6
LIN28BQ6ZN17 GRHPR-203ENST00000460882 1080 ntTSL 1 (best)18.41■□□□□ 0.546e-8■□□□□ 8.6
LIN28BQ6ZN17 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.526e-8■□□□□ 8.6
LIN28BQ6ZN17 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.514e-6■□□□□ 8.6
LIN28BQ6ZN17 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.474e-6■□□□□ 8.6
LIN28BQ6ZN17 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.444e-6■□□□□ 8.6
LIN28BQ6ZN17 NFE2-205ENST00000553198 1208 ntTSL 517.69■□□□□ 0.424e-6■□□□□ 8.6
LIN28BQ6ZN17 ARL8B-205ENST00000455168 1641 ntTSL 217.68■□□□□ 0.424e-6■□□□□ 8.6
LIN28BQ6ZN17 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.334e-6■□□□□ 8.6
LIN28BQ6ZN17 DFFA-203ENST00000476658 744 ntTSL 316.79■□□□□ 0.284e-6■□□□□ 8.6
LIN28BQ6ZN17 NUP54-205ENST00000507257 1938 ntTSL 516.33■□□□□ 0.214e-6■□□□□ 8.6
LIN28BQ6ZN17 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.194e-6■□□□□ 8.6
LIN28BQ6ZN17 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.154e-6■□□□□ 8.6
LIN28BQ6ZN17 PPP1R15A-202ENST00000600406 1725 nt15.96■□□□□ 0.155e-8■□□□□ 8.6
LIN28BQ6ZN17 GRHPR-209ENST00000494290 1593 ntTSL 515.77■□□□□ 0.116e-8■□□□□ 8.6
LIN28BQ6ZN17 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 04e-6■□□□□ 8.6
LIN28BQ6ZN17 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.71□□□□□ -0.054e-6■□□□□ 8.6
LIN28BQ6ZN17 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.084e-6■□□□□ 8.6
LIN28BQ6ZN17 SMS-204ENST00000478094 488 ntTSL 414.02□□□□□ -0.174e-6■□□□□ 8.6
LIN28BQ6ZN17 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC13.55□□□□□ -0.244e-6■□□□□ 8.6
LIN28BQ6ZN17 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.316e-8■□□□□ 8.6
LIN28BQ6ZN17 MRPL11-202ENST00000329819 922 ntTSL 2 BASIC13.01□□□□□ -0.334e-6■□□□□ 8.6
LIN28BQ6ZN17 ARPC4-TTLL3-203ENST00000424442 903 ntTSL 512.98□□□□□ -0.336e-8■□□□□ 8.6
LIN28BQ6ZN17 ARPC4-TTLL3-202ENST00000418163 551 ntTSL 412.46□□□□□ -0.416e-8■□□□□ 8.6
LIN28BQ6ZN17 GRHPR-210ENST00000497693 4762 ntTSL 212.4□□□□□ -0.426e-8■□□□□ 8.6
LIN28BQ6ZN17 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.444e-6■□□□□ 8.6
LIN28BQ6ZN17 ZC3H15-203ENST00000437396 556 ntTSL 412.25□□□□□ -0.454e-6■□□□□ 8.6
LIN28BQ6ZN17 PRRC2C-208ENST00000476522 1931 ntTSL 511.92□□□□□ -0.56e-8■□□□□ 8.6
LIN28BQ6ZN17 NUP54-202ENST00000502850 1604 ntTSL 1 (best)11.86□□□□□ -0.514e-6■□□□□ 8.6
LIN28BQ6ZN17 RPL4-205ENST00000564439 582 ntTSL 311.85□□□□□ -0.512e-9■□□□□ 8.6
LIN28BQ6ZN17 MRPL11-204ENST00000524576 2209 ntTSL 211.51□□□□□ -0.574e-6■□□□□ 8.6
LIN28BQ6ZN17 NUP54-211ENST00000512151 1385 ntTSL 210.98□□□□□ -0.654e-6■□□□□ 8.6
LIN28BQ6ZN17 MRPL11-203ENST00000430466 1527 ntTSL 1 (best) BASIC10.88□□□□□ -0.674e-6■□□□□ 8.6
LIN28BQ6ZN17 CHD4-204ENST00000535810 607 ntTSL 210.01□□□□□ -0.811e-7■□□□□ 8.6
LIN28BQ6ZN17 PRRC2C-203ENST00000392078 1919 ntTSL 1 (best) BASIC9.93□□□□□ -0.826e-8■□□□□ 8.6
LIN28BQ6ZN17 SMYD3-212ENST00000483072 466 ntTSL 29.74□□□□□ -0.854e-6■□□□□ 8.6
LIN28BQ6ZN17 NSD1-216ENST00000638627 1866 ntTSL 5 BASIC9.08□□□□□ -0.966e-8■□□□□ 8.6
LIN28BQ6ZN17 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.964e-6■□□□□ 8.6
Retrieved 100 of 21,972 protein–RNA pairs in 342 ms