RNA–Protein interactions for RNA: ENST00000395246.5

CDC42SE2-202, Transcript of CDC42 small effector 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CDC42SE2, Length 3,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-202ENST00000395246 NISCHQ9Y2I1 1504 aa32.94■■■□□ 2.86
CDC42SE2-202ENST00000395246 CCDC180Q9P1Z9 1646 aa29.11■■■□□ 2.25
CDC42SE2-202ENST00000395246 ZCCHC6Q5VYS8 1495 aaKnown RBP27.85■■■□□ 2.05
CDC42SE2-202ENST00000395246 DCAF1Q9Y4B6 1507 aa27.74■■■□□ 2.03
CDC42SE2-202ENST00000395246 MYO15BQ96JP2 1530 aa27.42■■□□□ 1.98
CDC42SE2-202ENST00000395246 NACADO15069 1562 aa26.78■■□□□ 1.88
CDC42SE2-202ENST00000395246 RB1CC1Q8TDY2 1594 aa26.34■■□□□ 1.81
CDC42SE2-202ENST00000395246 ABCC9O60706 1549 aa26.21■■□□□ 1.79
CDC42SE2-202ENST00000395246 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
CDC42SE2-202ENST00000395246 SCRIBQ14160 1630 aa26.01■■□□□ 1.75
CDC42SE2-202ENST00000395246 SHROOM4Q9ULL8 1493 aa25.83■■□□□ 1.73
CDC42SE2-202ENST00000395246 BICRAQ9NZM4 1560 aa25.7■■□□□ 1.7
CDC42SE2-202ENST00000395246 DCAF8L2P0C7V8 631 aa25.55■■□□□ 1.68
CDC42SE2-202ENST00000395246 RSF1Q96T23 1441 aaPredicted RBP25.44■■□□□ 1.66
CDC42SE2-202ENST00000395246 BAZ1AQ9NRL2 1556 aaPredicted RBP25.42■■□□□ 1.66
CDC42SE2-202ENST00000395246 PEG3Q9GZU2 1588 aa25.41■■□□□ 1.66
CDC42SE2-202ENST00000395246 SMARCA4P51532 1647 aa25.33■■□□□ 1.65
CDC42SE2-202ENST00000395246 MROH2BQ7Z745 1585 aa25.28■■□□□ 1.64
CDC42SE2-202ENST00000395246 CECR2Q9BXF3 1484 aa25.25■■□□□ 1.63
CDC42SE2-202ENST00000395246 WIZO95785 1651 aa25.11■■□□□ 1.61
CDC42SE2-202ENST00000395246 EIF4G1Q04637 1599 aaKnown RBP25.08■■□□□ 1.61
CDC42SE2-202ENST00000395246 TOP2AP11388 1531 aaKnown RBP25.07■■□□□ 1.6
CDC42SE2-202ENST00000395246 SUPT5HO00267 1087 aaKnown RBP24.84■■□□□ 1.57
CDC42SE2-202ENST00000395246 SMARCA2P51531 1590 aa24.84■■□□□ 1.57
CDC42SE2-202ENST00000395246 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
CDC42SE2-202ENST00000395246 ATAD2BQ9ULI0 1458 aa24.69■■□□□ 1.54
CDC42SE2-202ENST00000395246 NCAPD3P42695 1498 aa24.61■■□□□ 1.53
CDC42SE2-202ENST00000395246 CCDC88BA6NC98 1476 aa24.54■■□□□ 1.52
CDC42SE2-202ENST00000395246 CHIC1Q5VXU3 224 aa24.48■■□□□ 1.51
CDC42SE2-202ENST00000395246 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
CDC42SE2-202ENST00000395246 PABPN1Q86U42 306 aaKnown RBP eCLIP24.4■■□□□ 1.5
CDC42SE2-202ENST00000395246 BAZ1BQ9UIG0 1483 aaKnown RBP24.39■■□□□ 1.5
CDC42SE2-202ENST00000395246 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
CDC42SE2-202ENST00000395246 BIVM-ERCC5R4GMW8 1640 aa24.14■■□□□ 1.46
CDC42SE2-202ENST00000395246 CFTRP13569 1480 aa24.07■■□□□ 1.44
CDC42SE2-202ENST00000395246 TOP2BQ02880 1626 aa24■■□□□ 1.43
CDC42SE2-202ENST00000395246 SYNJ1O43426 1573 aa23.92■■□□□ 1.42
CDC42SE2-202ENST00000395246 ABCC8Q09428 1581 aa23.91■■□□□ 1.42
CDC42SE2-202ENST00000395246 EEA1Q15075 1411 aa23.86■■□□□ 1.41
CDC42SE2-202ENST00000395246 LAMC3Q9Y6N6 1575 aa23.8■■□□□ 1.4
CDC42SE2-202ENST00000395246 WRNQ14191 1432 aaPredicted RBP eCLIP23.79■■□□□ 1.4
CDC42SE2-202ENST00000395246 KIF21BO75037 1637 aa23.71■■□□□ 1.39
CDC42SE2-202ENST00000395246 CADPSQ9ULU8 1353 aa23.7■■□□□ 1.38
CDC42SE2-202ENST00000395246 CUX1P39880 1505 aa23.68■■□□□ 1.38
CDC42SE2-202ENST00000395246 TRIM41Q8WV44 630 aa23.64■■□□□ 1.38
CDC42SE2-202ENST00000395246 WDR97A6NE52 1622 aa23.58■■□□□ 1.36
CDC42SE2-202ENST00000395246 DNMBPQ6XZF7 1577 aa23.54■■□□□ 1.36
CDC42SE2-202ENST00000395246 ERICH3Q5RHP9 1530 aa23.5■■□□□ 1.35
CDC42SE2-202ENST00000395246 SOGA1O94964 1423 aa23.43■■□□□ 1.34
CDC42SE2-202ENST00000395246 FANCD2Q9BXW9 1451 aa23.41■■□□□ 1.34
CDC42SE2-202ENST00000395246 KIF21AQ7Z4S6 1674 aa23.37■■□□□ 1.33
CDC42SE2-202ENST00000395246 PRXQ9BXM0 1461 aa23.36■■□□□ 1.33
CDC42SE2-202ENST00000395246 RUSC2Q8N2Y8 1516 aa23.35■■□□□ 1.33
CDC42SE2-202ENST00000395246 CEP164Q9UPV0 1460 aa23.34■■□□□ 1.33
CDC42SE2-202ENST00000395246 TNIKQ9UKE5 1360 aa23.32■■□□□ 1.32
CDC42SE2-202ENST00000395246 GOLGA3Q08378 1498 aa23.31■■□□□ 1.32
CDC42SE2-202ENST00000395246 ABCA10Q8WWZ4 1543 aa23.3■■□□□ 1.32
CDC42SE2-202ENST00000395246 TOPBP1Q92547 1522 aa23.3■■□□□ 1.32
CDC42SE2-202ENST00000395246 ABCA5Q8WWZ7 1642 aa23.27■■□□□ 1.32
CDC42SE2-202ENST00000395246 URB2Q14146 1524 aaKnown RBP23.24■■□□□ 1.31
CDC42SE2-202ENST00000395246 FGD5Q6ZNL6 1462 aa23.23■■□□□ 1.31
CDC42SE2-202ENST00000395246 NESP48681 1621 aa23.23■■□□□ 1.31
CDC42SE2-202ENST00000395246 TARBP1Q13395 1621 aaKnown RBP23.23■■□□□ 1.31
CDC42SE2-202ENST00000395246 PDS5BQ9NTI5 1447 aa23.22■■□□□ 1.31
CDC42SE2-202ENST00000395246 CUL7Q14999 1698 aa23.21■■□□□ 1.31
CDC42SE2-202ENST00000395246 WDR62O43379 1518 aa23.19■■□□□ 1.3
CDC42SE2-202ENST00000395246 KIF27Q86VH2 1401 aa23.16■■□□□ 1.3
CDC42SE2-202ENST00000395246 POLA1P09884 1462 aaPredicted RBP23.16■■□□□ 1.3
CDC42SE2-202ENST00000395246 CSRNP3Q8WYN3 585 aa23.16■■□□□ 1.3
CDC42SE2-202ENST00000395246 LOC105371045A0A1W2PR82 267 aa23.14■■□□□ 1.29
CDC42SE2-202ENST00000395246 THOC2Q8NI27 1593 aaKnown RBP23.11■■□□□ 1.29
CDC42SE2-202ENST00000395246 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
CDC42SE2-202ENST00000395246 RAPGEF2Q9Y4G8 1499 aa23.04■■□□□ 1.28
CDC42SE2-202ENST00000395246 CEP162Q5TB80 1403 aa23.02■■□□□ 1.28
CDC42SE2-202ENST00000395246 PBRM1Q86U86 1689 aa23■■□□□ 1.27
CDC42SE2-202ENST00000395246 CTTNBP2Q8WZ74 1663 aa22.99■■□□□ 1.27
CDC42SE2-202ENST00000395246 IGF1RP08069 1367 aa22.98■■□□□ 1.27
CDC42SE2-202ENST00000395246 CUX2O14529 1486 aa22.93■■□□□ 1.26
CDC42SE2-202ENST00000395246 DNAJC5BQ9UF47 199 aa22.89■■□□□ 1.25
CDC42SE2-202ENST00000395246 IFT140Q96RY7 1462 aa22.84■■□□□ 1.25
CDC42SE2-202ENST00000395246 RAD54L2Q9Y4B4 1467 aa22.84■■□□□ 1.25
CDC42SE2-202ENST00000395246 MAP3K1Q13233 1512 aa22.82■■□□□ 1.24
CDC42SE2-202ENST00000395246 ADAMTS12P58397 1594 aa22.82■■□□□ 1.24
CDC42SE2-202ENST00000395246 SAMD9Q5K651 1589 aa22.81■■□□□ 1.24
CDC42SE2-202ENST00000395246 EFCAB5A4FU69 1503 aa22.8■■□□□ 1.24
CDC42SE2-202ENST00000395246 ARAP1Q96P48 1450 aa22.79■■□□□ 1.24
CDC42SE2-202ENST00000395246 VPS8Q8N3P4 1428 aa22.77■■□□□ 1.24
CDC42SE2-202ENST00000395246 GAPVD1Q14C86 1478 aa22.74■■□□□ 1.23
CDC42SE2-202ENST00000395246 CLIP1P30622 1438 aa22.73■■□□□ 1.23
CDC42SE2-202ENST00000395246 FAM9AQ8IZU1 332 aaPredicted RBP22.72■■□□□ 1.23
CDC42SE2-202ENST00000395246 CARMIL1Q5VZK9 1371 aa22.72■■□□□ 1.23
CDC42SE2-202ENST00000395246 ARHGAP35Q9NRY4 1499 aa22.7■■□□□ 1.22
CDC42SE2-202ENST00000395246 EIF4G3O43432 1585 aaKnown RBP22.68■■□□□ 1.22
CDC42SE2-202ENST00000395246 AQRO60306 1485 aaKnown RBP eCLIP22.68■■□□□ 1.221e-6■■□□□ 11.4
CDC42SE2-202ENST00000395246 CFAP43Q8NDM7 1665 aa22.67■■□□□ 1.22
CDC42SE2-202ENST00000395246 GRIN2BQ13224 1484 aa22.62■■□□□ 1.21
CDC42SE2-202ENST00000395246 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
CDC42SE2-202ENST00000395246 TRIM26Q12899 539 aaPredicted RBP22.58■■□□□ 1.2
CDC42SE2-202ENST00000395246 MAGI1Q96QZ7 1491 aaPredicted RBP22.56■■□□□ 1.2
CDC42SE2-202ENST00000395246 UGGT2Q9NYU1 1516 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms