RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 NISCHQ9Y2I1 1504 aa26.81■■□□□ 1.88
NUP54-201ENST00000264883 CCDC180Q9P1Z9 1646 aa23.36■■□□□ 1.33
NUP54-201ENST00000264883 ZCCHC6Q5VYS8 1495 aaKnown RBP22.54■■□□□ 1.2
NUP54-201ENST00000264883 DCAF1Q9Y4B6 1507 aa22.19■■□□□ 1.14
NUP54-201ENST00000264883 HRCP23327 699 aa22.19■■□□□ 1.14
NUP54-201ENST00000264883 ABCC9O60706 1549 aa22.08■■□□□ 1.13
NUP54-201ENST00000264883 DCAF8L2P0C7V8 631 aa21.99■■□□□ 1.11
NUP54-201ENST00000264883 MYO15BQ96JP2 1530 aa21.92■■□□□ 1.1
NUP54-201ENST00000264883 SHROOM4Q9ULL8 1493 aa21.88■■□□□ 1.09
NUP54-201ENST00000264883 PELP1Q8IZL8 1130 aaKnown RBP21.88■■□□□ 1.09
NUP54-201ENST00000264883 NACADO15069 1562 aa21.73■■□□□ 1.07
NUP54-201ENST00000264883 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
NUP54-201ENST00000264883 PPARGC1BQ86YN6 1023 aaKnown RBP21.64■■□□□ 1.05
NUP54-201ENST00000264883 PCGF6Q9BYE7 350 aa21.55■■□□□ 1.04
NUP54-201ENST00000264883 RB1CC1Q8TDY2 1594 aa21.54■■□□□ 1.04
NUP54-201ENST00000264883 SCRIBQ14160 1630 aa21.45■■□□□ 1.02
NUP54-201ENST00000264883 CHIC1Q5VXU3 224 aa21.36■■□□□ 1.01
NUP54-201ENST00000264883 MYT1Q01538 1121 aa21.14■□□□□ 0.97
NUP54-201ENST00000264883 UNC13AQ9UPW8 1703 aa21.13■□□□□ 0.97
NUP54-201ENST00000264883 SCAF1Q9H7N4 1312 aaKnown RBP21.11■□□□□ 0.97
NUP54-201ENST00000264883 BICRAQ9NZM4 1560 aa20.92■□□□□ 0.94
NUP54-201ENST00000264883 TRIM26Q12899 539 aaPredicted RBP20.85■□□□□ 0.93
NUP54-201ENST00000264883 CECR2Q9BXF3 1484 aa20.83■□□□□ 0.92
NUP54-201ENST00000264883 ZEB1P37275 1124 aaPredicted RBP20.82■□□□□ 0.92
NUP54-201ENST00000264883 RSF1Q96T23 1441 aaPredicted RBP20.82■□□□□ 0.92
NUP54-201ENST00000264883 PABPN1Q86U42 306 aaKnown RBP eCLIP20.73■□□□□ 0.91
NUP54-201ENST00000264883 MROH2BQ7Z745 1585 aa20.71■□□□□ 0.91
NUP54-201ENST00000264883 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
NUP54-201ENST00000264883 LOC105371045A0A1W2PR82 267 aa20.62■□□□□ 0.89
NUP54-201ENST00000264883 SMARCA4P51532 1647 aa20.6■□□□□ 0.89
NUP54-201ENST00000264883 ACIN1Q9UKV3 1341 aaKnown RBP20.54■□□□□ 0.88
NUP54-201ENST00000264883 WIZO95785 1651 aa20.54■□□□□ 0.88
NUP54-201ENST00000264883 NEUROD1Q13562 356 aa20.44■□□□□ 0.86
NUP54-201ENST00000264883 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
NUP54-201ENST00000264883 GTF3C3Q9Y5Q9 886 aa20.37■□□□□ 0.85
NUP54-201ENST00000264883 TOP2AP11388 1531 aaKnown RBP20.33■□□□□ 0.84
NUP54-201ENST00000264883 TRIM41Q8WV44 630 aa20.28■□□□□ 0.84
NUP54-201ENST00000264883 CENPBP07199 599 aaPredicted RBP20.27■□□□□ 0.84
NUP54-201ENST00000264883 EIF4G1Q04637 1599 aaKnown RBP20.25■□□□□ 0.83
NUP54-201ENST00000264883 ATAD2BQ9ULI0 1458 aa20.24■□□□□ 0.83
NUP54-201ENST00000264883 SMARCA2P51531 1590 aa20.22■□□□□ 0.83
NUP54-201ENST00000264883 CCDC88BA6NC98 1476 aa20.12■□□□□ 0.81
NUP54-201ENST00000264883 BAZ1BQ9UIG0 1483 aaKnown RBP20.1■□□□□ 0.81
NUP54-201ENST00000264883 NCAPD3P42695 1498 aa20.07■□□□□ 0.8
NUP54-201ENST00000264883 HMGXB3Q12766 1538 aa20.05■□□□□ 0.8
NUP54-201ENST00000264883 DIEXFQ68CQ4 756 aaKnown RBP20.04■□□□□ 0.8
NUP54-201ENST00000264883 CC2D2AQ9P2K1 1620 aa20.03■□□□□ 0.8
NUP54-201ENST00000264883 FAM9AQ8IZU1 332 aaPredicted RBP19.93■□□□□ 0.78
NUP54-201ENST00000264883 TTBK1Q5TCY1 1321 aaPredicted RBP19.91■□□□□ 0.78
NUP54-201ENST00000264883 CCER1Q8TC90 406 aaPredicted RBP19.88■□□□□ 0.77
NUP54-201ENST00000264883 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.87■□□□□ 0.77
NUP54-201ENST00000264883 WRNQ14191 1432 aaPredicted RBP eCLIP19.76■□□□□ 0.75
NUP54-201ENST00000264883 DNAJC5BQ9UF47 199 aa19.72■□□□□ 0.75
NUP54-201ENST00000264883 ABCC8Q09428 1581 aa19.7■□□□□ 0.74
NUP54-201ENST00000264883 YTHDC1Q96MU7 727 aaKnown RBP19.7■□□□□ 0.74
NUP54-201ENST00000264883 BCL11AQ9H165 835 aa19.65■□□□□ 0.74
NUP54-201ENST00000264883 CFTRP13569 1480 aa19.64■□□□□ 0.73
NUP54-201ENST00000264883 EEA1Q15075 1411 aa19.64■□□□□ 0.73
NUP54-201ENST00000264883 ZNF316A6NFI3 1004 aaPredicted RBP19.61■□□□□ 0.73
NUP54-201ENST00000264883 EHMT2Q96KQ7 1210 aa19.59■□□□□ 0.73
NUP54-201ENST00000264883 TNIKQ9UKE5 1360 aa19.57■□□□□ 0.72
NUP54-201ENST00000264883 CEP162Q5TB80 1403 aa19.54■□□□□ 0.72
NUP54-201ENST00000264883 PRDM2Q13029 1718 aa19.53■□□□□ 0.72
NUP54-201ENST00000264883 CADPSQ9ULU8 1353 aa19.53■□□□□ 0.72
NUP54-201ENST00000264883 ANP32EQ9BTT0 268 aa19.52■□□□□ 0.72
NUP54-201ENST00000264883 SYNJ1O43426 1573 aa19.51■□□□□ 0.71
NUP54-201ENST00000264883 MIER1Q8N108 512 aa19.48■□□□□ 0.71
NUP54-201ENST00000264883 TOP2BQ02880 1626 aa19.43■□□□□ 0.7
NUP54-201ENST00000264883 BIVM-ERCC5R4GMW8 1640 aa19.41■□□□□ 0.7
NUP54-201ENST00000264883 GOLGA3Q08378 1498 aa19.41■□□□□ 0.7
NUP54-201ENST00000264883 CLSPNQ9HAW4 1339 aa19.37■□□□□ 0.69
NUP54-201ENST00000264883 SOGA1O94964 1423 aa19.37■□□□□ 0.69
NUP54-201ENST00000264883 CSRNP3Q8WYN3 585 aa19.37■□□□□ 0.69
NUP54-201ENST00000264883 CUX1P39880 1505 aa19.37■□□□□ 0.69
NUP54-201ENST00000264883 LAMC3Q9Y6N6 1575 aa19.36■□□□□ 0.69
NUP54-201ENST00000264883 NESP48681 1621 aa19.35■□□□□ 0.69
NUP54-201ENST00000264883 SUPT16HQ9Y5B9 1047 aaKnown RBP19.34■□□□□ 0.69
NUP54-201ENST00000264883 TSHZ2Q9NRE2 1034 aa19.32■□□□□ 0.68
NUP54-201ENST00000264883 FANCD2Q9BXW9 1451 aa19.31■□□□□ 0.68
NUP54-201ENST00000264883 KIF21BO75037 1637 aa19.3■□□□□ 0.68
NUP54-201ENST00000264883 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
NUP54-201ENST00000264883 CEP164Q9UPV0 1460 aa19.27■□□□□ 0.68
NUP54-201ENST00000264883 UBTFP17480 764 aaKnown RBP19.24■□□□□ 0.67
NUP54-201ENST00000264883 PDS5BQ9NTI5 1447 aa19.19■□□□□ 0.66
NUP54-201ENST00000264883 DNMBPQ6XZF7 1577 aa19.16■□□□□ 0.66
NUP54-201ENST00000264883 VPS8Q8N3P4 1428 aa19.14■□□□□ 0.65
NUP54-201ENST00000264883 TOPBP1Q92547 1522 aa19.12■□□□□ 0.65
NUP54-201ENST00000264883 FGD5Q6ZNL6 1462 aa19.12■□□□□ 0.65
NUP54-201ENST00000264883 CLIP1P30622 1438 aa19.12■□□□□ 0.65
NUP54-201ENST00000264883 KIF21AQ7Z4S6 1674 aa19.12■□□□□ 0.65
NUP54-201ENST00000264883 URB2Q14146 1524 aaKnown RBP19.09■□□□□ 0.65
NUP54-201ENST00000264883 KIF27Q86VH2 1401 aa19.05■□□□□ 0.64
NUP54-201ENST00000264883 POLA1P09884 1462 aaPredicted RBP19.04■□□□□ 0.64
NUP54-201ENST00000264883 ERCC6Q03468 1493 aa19.02■□□□□ 0.64
NUP54-201ENST00000264883 PRKCSHP14314 528 aaPredicted RBP19.01■□□□□ 0.63
NUP54-201ENST00000264883 APLP2Q06481 763 aa19.01■□□□□ 0.63
NUP54-201ENST00000264883 CUX2O14529 1486 aa18.99■□□□□ 0.63
NUP54-201ENST00000264883 PRXQ9BXM0 1461 aa18.99■□□□□ 0.63
NUP54-201ENST00000264883 ABCA10Q8WWZ4 1543 aa18.98■□□□□ 0.63
NUP54-201ENST00000264883 MRC2Q9UBG0 1479 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms