RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 NISCHQ9Y2I1 1504 aa23.92■■□□□ 1.42
NUP54-211ENST00000512151 ABCC9O60706 1549 aa22.46■■□□□ 1.19
NUP54-211ENST00000512151 AEBP2Q6ZN18 517 aaPredicted RBP21.78■■□□□ 1.08
NUP54-211ENST00000512151 DNAJC5BQ9UF47 199 aa21.77■■□□□ 1.08
NUP54-211ENST00000512151 CCDC180Q9P1Z9 1646 aa21.7■■□□□ 1.06
NUP54-211ENST00000512151 RB1CC1Q8TDY2 1594 aa21■□□□□ 0.95
NUP54-211ENST00000512151 PABPN1Q86U42 306 aaKnown RBP eCLIP20.83■□□□□ 0.92
NUP54-211ENST00000512151 NACADO15069 1562 aa20.69■□□□□ 0.9
NUP54-211ENST00000512151 UNC13AQ9UPW8 1703 aa20.59■□□□□ 0.89
NUP54-211ENST00000512151 BICRAQ9NZM4 1560 aa20.52■□□□□ 0.87
NUP54-211ENST00000512151 DCAF8L2P0C7V8 631 aa20.47■□□□□ 0.87
NUP54-211ENST00000512151 DNAJC5Q9H3Z4 198 aa20.39■□□□□ 0.85
NUP54-211ENST00000512151 CHIC1Q5VXU3 224 aa20.34■□□□□ 0.85
NUP54-211ENST00000512151 CECR2Q9BXF3 1484 aa20.28■□□□□ 0.84
NUP54-211ENST00000512151 CC2D2AQ9P2K1 1620 aa20.23■□□□□ 0.83
NUP54-211ENST00000512151 MYO15BQ96JP2 1530 aa20.16■□□□□ 0.82
NUP54-211ENST00000512151 SHROOM4Q9ULL8 1493 aa20.02■□□□□ 0.8
NUP54-211ENST00000512151 EIF4G1Q04637 1599 aaKnown RBP20.01■□□□□ 0.79
NUP54-211ENST00000512151 SCRIBQ14160 1630 aa19.8■□□□□ 0.76
NUP54-211ENST00000512151 ZCCHC6Q5VYS8 1495 aaKnown RBP19.69■□□□□ 0.74
NUP54-211ENST00000512151 DCAF1Q9Y4B6 1507 aa19.68■□□□□ 0.74
NUP54-211ENST00000512151 CUX2O14529 1486 aa19.57■□□□□ 0.72
NUP54-211ENST00000512151 ERCC6Q03468 1493 aa19.37■□□□□ 0.69
NUP54-211ENST00000512151 TRIM41Q8WV44 630 aa19.21■□□□□ 0.67
NUP54-211ENST00000512151 NCAPD3P42695 1498 aa19.14■□□□□ 0.65
NUP54-211ENST00000512151 NESP48681 1621 aa19.13■□□□□ 0.65
NUP54-211ENST00000512151 THOC2Q8NI27 1593 aaKnown RBP19.03■□□□□ 0.64
NUP54-211ENST00000512151 ATAD2BQ9ULI0 1458 aa19.01■□□□□ 0.63
NUP54-211ENST00000512151 HMGXB3Q12766 1538 aa18.92■□□□□ 0.62
NUP54-211ENST00000512151 POTEDQ86YR6 584 aa18.91■□□□□ 0.62
NUP54-211ENST00000512151 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
NUP54-211ENST00000512151 KIF21AQ7Z4S6 1674 aa18.82■□□□□ 0.6
NUP54-211ENST00000512151 SMARCA4P51532 1647 aa18.8■□□□□ 0.6
NUP54-211ENST00000512151 SENP3Q9H4L4 574 aaPredicted RBP18.8■□□□□ 0.6
NUP54-211ENST00000512151 LAMC3Q9Y6N6 1575 aa18.78■□□□□ 0.6
NUP54-211ENST00000512151 BAZ1BQ9UIG0 1483 aaKnown RBP18.75■□□□□ 0.59
NUP54-211ENST00000512151 PDS5BQ9NTI5 1447 aa18.68■□□□□ 0.58
NUP54-211ENST00000512151 BAZ1AQ9NRL2 1556 aaPredicted RBP18.64■□□□□ 0.57
NUP54-211ENST00000512151 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
NUP54-211ENST00000512151 PEG3Q9GZU2 1588 aa18.61■□□□□ 0.57
NUP54-211ENST00000512151 WDR62O43379 1518 aa18.59■□□□□ 0.57
NUP54-211ENST00000512151 OSCARQ8IYS5 282 aa18.56■□□□□ 0.56
NUP54-211ENST00000512151 CADPSQ9ULU8 1353 aa18.53■□□□□ 0.56
NUP54-211ENST00000512151 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
NUP54-211ENST00000512151 RIMBP3CA6NJZ7 1639 aa18.45■□□□□ 0.54
NUP54-211ENST00000512151 RIMBP3BA6NNM3 1639 aa18.45■□□□□ 0.54
NUP54-211ENST00000512151 RIMBP3Q9UFD9 1639 aa18.45■□□□□ 0.54
NUP54-211ENST00000512151 CEP164Q9UPV0 1460 aa18.38■□□□□ 0.53
NUP54-211ENST00000512151 PHF23Q9BUL5 403 aaPredicted RBP18.37■□□□□ 0.53
NUP54-211ENST00000512151 FANCD2Q9BXW9 1451 aa18.32■□□□□ 0.52
NUP54-211ENST00000512151 ARHGEF11O15085 1522 aa18.31■□□□□ 0.52
NUP54-211ENST00000512151 URB2Q14146 1524 aaKnown RBP18.27■□□□□ 0.51
NUP54-211ENST00000512151 CYB5RLQ6IPT4 315 aa18.21■□□□□ 0.51
NUP54-211ENST00000512151 TRHP20396 242 aaPredicted RBP18.2■□□□□ 0.5
NUP54-211ENST00000512151 WIZO95785 1651 aa18.2■□□□□ 0.5
NUP54-211ENST00000512151 CFTRP13569 1480 aa18.18■□□□□ 0.5
NUP54-211ENST00000512151 ZNF608Q9ULD9 1512 aaPredicted RBP18.16■□□□□ 0.5
NUP54-211ENST00000512151 ARAP1Q96P48 1450 aa18.11■□□□□ 0.49
NUP54-211ENST00000512151 IFT140Q96RY7 1462 aa18.04■□□□□ 0.48
NUP54-211ENST00000512151 CHD1O14646 1710 aa17.98■□□□□ 0.47
NUP54-211ENST00000512151 EIF4G3O43432 1585 aaKnown RBP17.97■□□□□ 0.47
NUP54-211ENST00000512151 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
NUP54-211ENST00000512151 TOPBP1Q92547 1522 aa17.92■□□□□ 0.46
NUP54-211ENST00000512151 AQRO60306 1485 aaKnown RBP eCLIP17.89■□□□□ 0.45
NUP54-211ENST00000512151 PRDM2Q13029 1718 aa17.89■□□□□ 0.45
NUP54-211ENST00000512151 TOP2AP11388 1531 aaKnown RBP17.89■□□□□ 0.45
NUP54-211ENST00000512151 FBLN2P98095 1184 aa17.86■□□□□ 0.45
NUP54-211ENST00000512151 TARBP1Q13395 1621 aaKnown RBP17.81■□□□□ 0.44
NUP54-211ENST00000512151 CLASP1Q7Z460 1538 aa17.76■□□□□ 0.43
NUP54-211ENST00000512151 DNMBPQ6XZF7 1577 aa17.76■□□□□ 0.43
NUP54-211ENST00000512151 ABCC8Q09428 1581 aa17.74■□□□□ 0.43
NUP54-211ENST00000512151 CCDC88BA6NC98 1476 aa17.72■□□□□ 0.43
NUP54-211ENST00000512151 POLA1P09884 1462 aaPredicted RBP17.69■□□□□ 0.42
NUP54-211ENST00000512151 FOXD1Q16676 465 aa17.68■□□□□ 0.42
NUP54-211ENST00000512151 RAD54L2Q9Y4B4 1467 aa17.67■□□□□ 0.42
NUP54-211ENST00000512151 TDRD9Q8NDG6 1382 aaKnown RBP17.67■□□□□ 0.42
NUP54-211ENST00000512151 SNAPC4Q5SXM2 1469 aa17.67■□□□□ 0.42
NUP54-211ENST00000512151 SYNJ1O43426 1573 aa17.63■□□□□ 0.41
NUP54-211ENST00000512151 GAPVD1Q14C86 1478 aa17.61■□□□□ 0.41
NUP54-211ENST00000512151 CHMP7Q8WUX9 453 aaPredicted RBP17.6■□□□□ 0.41
NUP54-211ENST00000512151 SOGA1O94964 1423 aa17.57■□□□□ 0.4
NUP54-211ENST00000512151 MAGI1Q96QZ7 1491 aaPredicted RBP17.55■□□□□ 0.4
NUP54-211ENST00000512151 ILDR1Q86SU0 546 aaPredicted RBP17.54■□□□□ 0.4
NUP54-211ENST00000512151 SYNJ2O15056 1496 aa17.51■□□□□ 0.39
NUP54-211ENST00000512151 ERCC6L2Q5T890 1561 aa17.51■□□□□ 0.39
NUP54-211ENST00000512151 GRIN2BQ13224 1484 aa17.49■□□□□ 0.39
NUP54-211ENST00000512151 WDR97A6NE52 1622 aa17.48■□□□□ 0.39
NUP54-211ENST00000512151 FGD5Q6ZNL6 1462 aa17.48■□□□□ 0.39
NUP54-211ENST00000512151 KIF13AQ9H1H9 1805 aa17.42■□□□□ 0.38
NUP54-211ENST00000512151 CUX1P39880 1505 aa17.39■□□□□ 0.37
NUP54-211ENST00000512151 KDM4FA0A1W2PPD8 638 aa17.39■□□□□ 0.37
NUP54-211ENST00000512151 PBRM1Q86U86 1689 aa17.38■□□□□ 0.37
NUP54-211ENST00000512151 CEP170Q5SW79 1584 aa17.34■□□□□ 0.37
NUP54-211ENST00000512151 GRIN2AQ12879 1464 aa17.27■□□□□ 0.36
NUP54-211ENST00000512151 ABCA5Q8WWZ7 1642 aa17.27■□□□□ 0.36
NUP54-211ENST00000512151 NUP160Q12769 1436 aa17.27■□□□□ 0.35
NUP54-211ENST00000512151 SHROOM2Q13796 1616 aa17.26■□□□□ 0.35
NUP54-211ENST00000512151 FAM69CQ0P6D2 419 aa17.24■□□□□ 0.35
NUP54-211ENST00000512151 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
NUP54-211ENST00000512151 ABCC10Q5T3U5 1492 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms