Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.553e-6■■■□□ 15.7
UPF1Q92900 SLC7A6OS-203ENST00000561933 4180 ntTSL 211.55□□□□□ -0.566e-6■■■□□ 15.7
UPF1Q92900 SLC7A6OS-201ENST00000263997 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.576e-6■■■□□ 15.7
UPF1Q92900 SLC7A6OS-204ENST00000568315 428 ntTSL 37.76□□□□□ -1.176e-6■■■□□ 15.7
UPF1Q92900 ZNF526-201ENST00000301215 4023 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.742e-7■■■□□ 15.7
UPF1Q92900 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.39e-7■■■□□ 15.7
UPF1Q92900 ZNF496-203ENST00000462139 9243 ntTSL 1 (best)10.3□□□□□ -0.769e-7■■■□□ 15.7
UPF1Q92900 ZNF496-202ENST00000461277 3857 ntTSL 1 (best)9.23□□□□□ -0.939e-7■■■□□ 15.7
UPF1Q92900 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.66■□□□□ 0.582e-6■■■□□ 15.7
UPF1Q92900 LINC00963-217ENST00000624009 663 ntTSL 5 BASIC17.5■□□□□ 0.392e-6■■■□□ 15.7
UPF1Q92900 LINC00963-220ENST00000625171 830 ntTSL 515.85■□□□□ 0.132e-6■■■□□ 15.7
UPF1Q92900 LINC00963-219ENST00000624390 472 ntTSL 511.48□□□□□ -0.572e-6■■■□□ 15.7
UPF1Q92900 LINC00963-202ENST00000419300 9557 ntTSL 1 (best) BASIC9.72□□□□□ -0.852e-6■■■□□ 15.7
UPF1Q92900 LINC00963-215ENST00000622972 444 ntTSL 58.51□□□□□ -1.052e-6■■■□□ 15.7
UPF1Q92900 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC29.27■■■□□ 2.282e-9■■■□□ 15.7
UPF1Q92900 OSBP2-213ENST00000453621 895 ntTSL 523.58■■□□□ 1.371e-6■■■□□ 15.7
UPF1Q92900 MRTO4-202ENST00000479559 409 ntTSL 221.88■■□□□ 1.091e-6■■■□□ 15.7
UPF1Q92900 BLOC1S6-215ENST00000567523 1839 ntTSL 217.9■□□□□ 0.461e-6■■■□□ 15.7
UPF1Q92900 LINC00963-213ENST00000622120 355 ntTSL 517.77■□□□□ 0.441e-6■■■□□ 15.7
UPF1Q92900 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.411e-6■■■□□ 15.7
UPF1Q92900 OSBP2-214ENST00000454145 589 ntTSL 416.82■□□□□ 0.281e-6■■■□□ 15.7
UPF1Q92900 LINC00963-212ENST00000608669 531 ntTSL 516.44■□□□□ 0.221e-6■■■□□ 15.7
UPF1Q92900 OSBP2-205ENST00000424224 861 ntTSL 315.74■□□□□ 0.111e-6■■■□□ 15.7
UPF1Q92900 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.15□□□□□ -0.141e-14■■■□□ 15.7
UPF1Q92900 LINC00963-206ENST00000453213 469 ntTSL 313.97□□□□□ -0.171e-6■■■□□ 15.7
UPF1Q92900 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.21e-6■■■□□ 15.7
UPF1Q92900 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.221e-6■■■□□ 15.7
UPF1Q92900 CTDSPL-205ENST00000436654 804 ntTSL 313.23□□□□□ -0.291e-6■■■□□ 15.7
UPF1Q92900 TUBGCP4-210ENST00000565548 762 ntTSL 512.53□□□□□ -0.41e-6■■■□□ 15.7
UPF1Q92900 TUBGCP4-208ENST00000564079 6798 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.441e-6■■■□□ 15.7
UPF1Q92900 SAMHD1-201ENST00000262878 4784 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.491e-6■■■□□ 15.7
UPF1Q92900 NFRKB-201ENST00000446488 5093 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.551e-6■■■□□ 15.7
UPF1Q92900 PREPL-204ENST00000409272 3030 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.983e-12■■■□□ 15.7
UPF1Q92900 MPZL1-204ENST00000403379 961 ntTSL 58.32□□□□□ -1.083e-13■■■□□ 15.7
UPF1Q92900 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.263e-12■■■□□ 15.7
UPF1Q92900 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.61e-6■■■□□ 15.7
UPF1Q92900 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.171e-7■■■□□ 15.7
UPF1Q92900 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.051e-7■■■□□ 15.7
UPF1Q92900 GNPDA1-202ENST00000500692 2319 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.111e-7■■■□□ 15.7
UPF1Q92900 GNPDA1-212ENST00000513454 980 ntTSL 5 BASIC14.14□□□□□ -0.151e-7■■■□□ 15.7
UPF1Q92900 GNPDA1-201ENST00000311337 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.331e-7■■■□□ 15.7
UPF1Q92900 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC13□□□□□ -0.331e-7■■■□□ 15.7
UPF1Q92900 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.541e-7■■■□□ 15.7
UPF1Q92900 GREB1-204ENST00000381486 8484 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.561e-7■■■□□ 15.7
UPF1Q92900 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.181e-6■■■□□ 15.7
UPF1Q92900 SIRT7-210ENST00000572902 909 ntTSL 329.87■■■□□ 2.376e-14■■■□□ 15.7
UPF1Q92900 FADS2-204ENST00000517312 588 ntTSL 523.17■■□□□ 1.38e-16■■■□□ 15.7
UPF1Q92900 FADS2-206ENST00000518606 510 ntTSL 49.79□□□□□ -0.848e-16■■■□□ 15.7
UPF1Q92900 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC32.22■■■□□ 2.757e-8■■■□□ 15.7
UPF1Q92900 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC26.94■■□□□ 1.97e-8■■■□□ 15.7
UPF1Q92900 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.827e-8■■■□□ 15.7
UPF1Q92900 STX10-210ENST00000591843 1073 ntTSL 525.98■■□□□ 1.757e-8■■■□□ 15.7
UPF1Q92900 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC22.22■■□□□ 1.157e-8■■■□□ 15.7
UPF1Q92900 STX10-205ENST00000587318 704 ntTSL 220.3■□□□□ 0.847e-8■■■□□ 15.7
UPF1Q92900 STX10-211ENST00000593126 713 ntTSL 318.8■□□□□ 0.67e-8■■■□□ 15.7
UPF1Q92900 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.114e-7■■■□□ 15.7
UPF1Q92900 GINS1-201ENST00000262460 3249 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.015e-7■■■□□ 15.7
UPF1Q92900 GINS1-203ENST00000481735 396 ntTSL 38.1□□□□□ -1.115e-7■■■□□ 15.7
UPF1Q92900 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC39.11■■■■□ 3.854e-7■■■□□ 15.7
UPF1Q92900 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.74e-7■■■□□ 15.7
UPF1Q92900 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.634e-7■■■□□ 15.7
UPF1Q92900 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.534e-7■■■□□ 15.7
UPF1Q92900 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.234e-7■■■□□ 15.7
UPF1Q92900 NT5M-205ENST00000483704 1408 ntTSL 322.53■■□□□ 1.24e-7■■■□□ 15.7
UPF1Q92900 AC006511.5-201ENST00000639368 1209 ntTSL 521.83■■□□□ 1.094e-7■■■□□ 15.7
UPF1Q92900 DCP2-207ENST00000513585 1572 ntTSL 221.82■■□□□ 1.084e-7■■■□□ 15.7
UPF1Q92900 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.744e-7■■■□□ 15.7
UPF1Q92900 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.484e-7■■■□□ 15.7
UPF1Q92900 ARPC5L-203ENST00000465124 1877 ntTSL 216.86■□□□□ 0.294e-7■■■□□ 15.7
UPF1Q92900 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.82□□□□□ -0.044e-7■■■□□ 15.7
UPF1Q92900 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.224e-7■■■□□ 15.7
UPF1Q92900 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.224e-7■■■□□ 15.7
UPF1Q92900 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC13.69□□□□□ -0.224e-7■■■□□ 15.7
UPF1Q92900 NECAP1-223ENST00000640091 2115 ntTSL 212.64□□□□□ -0.394e-7■■■□□ 15.7
UPF1Q92900 NECAP1-212ENST00000638787 2067 ntTSL 511.96□□□□□ -0.494e-7■■■□□ 15.7
UPF1Q92900 NECAP1-216ENST00000639167 2197 ntTSL 5 BASIC10.85□□□□□ -0.674e-7■■■□□ 15.7
UPF1Q92900 NECAP1-219ENST00000639811 2175 ntTSL 5 BASIC10.82□□□□□ -0.684e-7■■■□□ 15.7
UPF1Q92900 GIGYF2-202ENST00000409196 5747 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.681e-7■■■□□ 15.7
UPF1Q92900 NECAP1-220ENST00000639841 1982 ntTSL 510.35□□□□□ -0.754e-7■■■□□ 15.7
UPF1Q92900 GIGYF2-204ENST00000409480 5976 ntTSL 5 BASIC10.2□□□□□ -0.781e-7■■■□□ 15.7
UPF1Q92900 NECAP1-217ENST00000639276 2646 ntTSL 59.91□□□□□ -0.824e-7■■■□□ 15.7
UPF1Q92900 NECAP1-202ENST00000450991 2446 ntTSL 1 (best)9.89□□□□□ -0.834e-7■■■□□ 15.7
UPF1Q92900 NECAP1-214ENST00000639038 2423 ntTSL 59.65□□□□□ -0.864e-7■■■□□ 15.7
UPF1Q92900 NECAP1-225ENST00000640209 2473 ntTSL 59.61□□□□□ -0.874e-7■■■□□ 15.7
UPF1Q92900 GIGYF2-203ENST00000409451 5937 ntTSL 1 (best) BASIC9.35□□□□□ -0.911e-7■■■□□ 15.7
UPF1Q92900 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC9.28□□□□□ -0.921e-7■■■□□ 15.7
UPF1Q92900 NECAP1-201ENST00000339754 2593 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.944e-7■■■□□ 15.7
UPF1Q92900 NECAP1-215ENST00000639071 2578 ntTSL 59.09□□□□□ -0.954e-7■■■□□ 15.7
UPF1Q92900 NECAP1-218ENST00000639595 2587 ntTSL 59.09□□□□□ -0.954e-7■■■□□ 15.7
UPF1Q92900 NECAP1-207ENST00000544891 4899 ntTSL 58.99□□□□□ -0.974e-7■■■□□ 15.7
UPF1Q92900 NECAP1-210ENST00000638237 2517 ntAPPRIS ALT1 TSL 5 BASIC8.93□□□□□ -0.984e-7■■■□□ 15.7
UPF1Q92900 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC8.9□□□□□ -0.981e-7■■■□□ 15.7
UPF1Q92900 NECAP1-227ENST00000640648 5166 ntTSL 58.21□□□□□ -1.094e-7■■■□□ 15.7
UPF1Q92900 NECAP1-213ENST00000638883 3940 ntTSL 58□□□□□ -1.134e-7■■■□□ 15.7
UPF1Q92900 NECAP1-224ENST00000640099 3313 ntTSL 57.82□□□□□ -1.164e-7■■■□□ 15.7
UPF1Q92900 NECAP1-203ENST00000537796 3418 ntTSL 57.65□□□□□ -1.194e-7■■■□□ 15.7
UPF1Q92900 GIGYF2-231ENST00000474312 4687 ntTSL 27.52□□□□□ -1.211e-7■■■□□ 15.7
UPF1Q92900 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC7.5□□□□□ -1.214e-7■■■□□ 15.7
UPF1Q92900 NECAP1-226ENST00000640481 3216 ntTSL 57.42□□□□□ -1.224e-7■■■□□ 15.7
UPF1Q92900 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.224e-7■■■□□ 15.7
Retrieved 100 of 15,879 protein–RNA pairs in 123.4 ms