RNA–Protein interactions for RNA: ENST00000400000.6

VAPA-202, Transcript of VAMP associated protein A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPA, Length 6,815 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-202ENST00000400000 DCAF8L2P0C7V8 631 aa24.55■■□□□ 1.52
VAPA-202ENST00000400000 EHMT2Q96KQ7 1210 aa23.05■■□□□ 1.28
VAPA-202ENST00000400000 SUPT5HO00267 1087 aaKnown RBP22.83■■□□□ 1.25
VAPA-202ENST00000400000 SHROOM4Q9ULL8 1493 aa22.46■■□□□ 1.19
VAPA-202ENST00000400000 TTBK1Q5TCY1 1321 aaPredicted RBP22.17■■□□□ 1.14
VAPA-202ENST00000400000 RANGAP1P46060 587 aaPredicted RBP21.86■■□□□ 1.09
VAPA-202ENST00000400000 FAM9AQ8IZU1 332 aaPredicted RBP21.82■■□□□ 1.08
VAPA-202ENST00000400000 APLP2Q06481 763 aa21.7■■□□□ 1.06
VAPA-202ENST00000400000 PELP1Q8IZL8 1130 aaKnown RBP21.61■■□□□ 1.05
VAPA-202ENST00000400000 ATP1B4Q9UN42 357 aaPredicted RBP21.55■■□□□ 1.04
VAPA-202ENST00000400000 PCGF6Q9BYE7 350 aa21.43■■□□□ 1.02
VAPA-202ENST00000400000 ERICH6Q7L0X2 663 aa21.24■□□□□ 0.99
VAPA-202ENST00000400000 NISCHQ9Y2I1 1504 aa21.23■□□□□ 0.99
VAPA-202ENST00000400000 YTHDC1Q96MU7 727 aaKnown RBP21.05■□□□□ 0.96
VAPA-202ENST00000400000 PPARGC1BQ86YN6 1023 aaKnown RBP21.03■□□□□ 0.96
VAPA-202ENST00000400000 CCER1Q8TC90 406 aaPredicted RBP20.99■□□□□ 0.95
VAPA-202ENST00000400000 CHIC1Q5VXU3 224 aa20.91■□□□□ 0.94
VAPA-202ENST00000400000 MYT1LQ9UL68 1186 aa20.87■□□□□ 0.93
VAPA-202ENST00000400000 UBTFP17480 764 aaKnown RBP20.86■□□□□ 0.93
VAPA-202ENST00000400000 CNGB1Q14028 1251 aaPredicted RBP20.84■□□□□ 0.93
VAPA-202ENST00000400000 TRIM41Q8WV44 630 aa20.8■□□□□ 0.92
VAPA-202ENST00000400000 POLR3GLQ9BT43 218 aa20.77■□□□□ 0.92
VAPA-202ENST00000400000 MYT1Q01538 1121 aa20.74■□□□□ 0.91
VAPA-202ENST00000400000 CENPBP07199 599 aaPredicted RBP20.72■□□□□ 0.91
VAPA-202ENST00000400000 ITGAEP38570 1179 aa20.64■□□□□ 0.9
VAPA-202ENST00000400000 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.63■□□□□ 0.89
VAPA-202ENST00000400000 HNRNPUL2Q1KMD3 747 aaKnown RBP20.63■□□□□ 0.89
VAPA-202ENST00000400000 NEFLP07196 543 aa20.59■□□□□ 0.89
VAPA-202ENST00000400000 SLC4A1APQ9BWU0 796 aaKnown RBP20.45■□□□□ 0.86
VAPA-202ENST00000400000 ZEB1P37275 1124 aaPredicted RBP20.31■□□□□ 0.84
VAPA-202ENST00000400000 DAXXQ9UER7 740 aaPredicted RBP20.26■□□□□ 0.83
VAPA-202ENST00000400000 BCL11AQ9H165 835 aa20.07■□□□□ 0.8
VAPA-202ENST00000400000 LOC105371045A0A1W2PR82 267 aa20.04■□□□□ 0.8
VAPA-202ENST00000400000 CLSPNQ9HAW4 1339 aa19.94■□□□□ 0.78
VAPA-202ENST00000400000 SLC24A1O60721 1099 aa19.9■□□□□ 0.78
VAPA-202ENST00000400000 TRIM26Q12899 539 aaPredicted RBP19.84■□□□□ 0.77
VAPA-202ENST00000400000 FAM50AQ14320 339 aaKnown RBP19.82■□□□□ 0.76
VAPA-202ENST00000400000 PLPPR3Q6T4P5 718 aa19.82■□□□□ 0.76
VAPA-202ENST00000400000 ZNF316A6NFI3 1004 aaPredicted RBP19.81■□□□□ 0.76
VAPA-202ENST00000400000 HRCP23327 699 aa19.81■□□□□ 0.76
VAPA-202ENST00000400000 FBLN2P98095 1184 aa19.8■□□□□ 0.76
VAPA-202ENST00000400000 NEUROD1Q13562 356 aa19.78■□□□□ 0.76
VAPA-202ENST00000400000 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.76
VAPA-202ENST00000400000 ZNF326Q5BKZ1 582 aaKnown RBP19.77■□□□□ 0.76
VAPA-202ENST00000400000 TRIM52Q96A61 297 aa19.77■□□□□ 0.76
VAPA-202ENST00000400000 BCANQ96GW7 911 aa19.77■□□□□ 0.75
VAPA-202ENST00000400000 ARID3CA6NKF2 412 aa19.73■□□□□ 0.75
VAPA-202ENST00000400000 RTL5Q5HYW3 569 aaPredicted RBP19.56■□□□□ 0.72
VAPA-202ENST00000400000 DIEXFQ68CQ4 756 aaKnown RBP19.48■□□□□ 0.71
VAPA-202ENST00000400000 P3H3Q8IVL6 736 aa19.44■□□□□ 0.7
VAPA-202ENST00000400000 ZBTB47Q9UFB7 747 aaPredicted RBP19.41■□□□□ 0.7
VAPA-202ENST00000400000 ABCC9O60706 1549 aa19.41■□□□□ 0.7
VAPA-202ENST00000400000 CANXP27824 592 aaKnown RBP19.38■□□□□ 0.69
VAPA-202ENST00000400000 SENP3Q9H4L4 574 aaPredicted RBP19.33■□□□□ 0.69
VAPA-202ENST00000400000 ZNF777Q9ULD5 760 aaPredicted RBP19.32■□□□□ 0.68
VAPA-202ENST00000400000 PLEKHG5O94827 1062 aa19.28■□□□□ 0.68
VAPA-202ENST00000400000 NPM2Q86SE8 214 aaKnown RBP19.24■□□□□ 0.67
VAPA-202ENST00000400000 CHGAP10645 457 aaKnown RBP19.22■□□□□ 0.67
VAPA-202ENST00000400000 ANP32CO43423 234 aa19.21■□□□□ 0.67
VAPA-202ENST00000400000 GTF3C3Q9Y5Q9 886 aa19.19■□□□□ 0.66
VAPA-202ENST00000400000 A0A0G2JS52 829 aa19.17■□□□□ 0.66
VAPA-202ENST00000400000 SCAF1Q9H7N4 1312 aaKnown RBP19.16■□□□□ 0.66
VAPA-202ENST00000400000 SALL2Q9Y467 1007 aaPredicted RBP19.13■□□□□ 0.65
VAPA-202ENST00000400000 CDK11AQ9UQ88 783 aaPredicted RBP19.13■□□□□ 0.65
VAPA-202ENST00000400000 ESF1Q9H501 851 aaKnown RBP19.12■□□□□ 0.65
VAPA-202ENST00000400000 STAG3Q9UJ98 1225 aa19.11■□□□□ 0.65
VAPA-202ENST00000400000 NEFMP07197 916 aa19.11■□□□□ 0.65
VAPA-202ENST00000400000 ZBTB7CA1YPR0 619 aa19■□□□□ 0.63
VAPA-202ENST00000400000 ARXQ96QS3 562 aa19■□□□□ 0.63
VAPA-202ENST00000400000 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.94■□□□□ 0.625e-10■□□□□ 10.1
VAPA-202ENST00000400000 HSP90AA1P07900 732 aaKnown RBP18.88■□□□□ 0.61
VAPA-202ENST00000400000 FAM9BQ8IZU0 186 aa18.86■□□□□ 0.61
VAPA-202ENST00000400000 EIF5BO60841 1220 aaKnown RBP18.86■□□□□ 0.61
VAPA-202ENST00000400000 SENP3-EIF4A1A0A087X0R7 540 aa18.84■□□□□ 0.61
VAPA-202ENST00000400000 ANP32AP39687 249 aaKnown RBP18.82■□□□□ 0.6
VAPA-202ENST00000400000 CHIC2Q9UKJ5 165 aa18.8■□□□□ 0.6
VAPA-202ENST00000400000 C14orf37Q86TY3 774 aa18.79■□□□□ 0.6
VAPA-202ENST00000400000 FKBP8Q14318 412 aa18.78■□□□□ 0.6
VAPA-202ENST00000400000 NPM1P06748 294 aaKnown RBP eCLIP18.77■□□□□ 0.6
VAPA-202ENST00000400000 KDM2AQ9Y2K7 1162 aa18.76■□□□□ 0.59
VAPA-202ENST00000400000 NBR1Q14596 966 aa18.73■□□□□ 0.59
VAPA-202ENST00000400000 TULP1O00294 542 aaPredicted RBP18.73■□□□□ 0.59
VAPA-202ENST00000400000 HIRIP3Q9BW71 556 aaPredicted RBP18.72■□□□□ 0.59
VAPA-202ENST00000400000 IRX6P78412 446 aaPredicted RBP18.71■□□□□ 0.59
VAPA-202ENST00000400000 HNRNPUQ00839 825 aaKnown RBP eCLIP18.7■□□□□ 0.58
VAPA-202ENST00000400000 DDX10Q13206 875 aaKnown RBP18.69■□□□□ 0.58
VAPA-202ENST00000400000 TPRNQ4KMQ1 711 aa18.68■□□□□ 0.58
VAPA-202ENST00000400000 ANP32BQ92688 251 aaKnown RBP18.63■□□□□ 0.57
VAPA-202ENST00000400000 TAOK2Q9UL54 1235 aa18.62■□□□□ 0.57
VAPA-202ENST00000400000 KCNH8Q96L42 1107 aa18.59■□□□□ 0.57
VAPA-202ENST00000400000 TONSLQ96HA7 1378 aa18.56■□□□□ 0.56
VAPA-202ENST00000400000 HAP1P54257 671 aaPredicted RBP18.55■□□□□ 0.56
VAPA-202ENST00000400000 UPF2Q9HAU5 1272 aaKnown RBP18.55■□□□□ 0.56
VAPA-202ENST00000400000 ARID4BQ4LE39 1312 aaPredicted RBP18.55■□□□□ 0.56
VAPA-202ENST00000400000 ACIN1Q9UKV3 1341 aaKnown RBP18.53■□□□□ 0.56
VAPA-202ENST00000400000 TMC1Q8TDI8 760 aa18.53■□□□□ 0.56
VAPA-202ENST00000400000 WDR43Q15061 677 aaKnown RBP eCLIP18.51■□□□□ 0.55
VAPA-202ENST00000400000 CSRNP3Q8WYN3 585 aa18.49■□□□□ 0.55
VAPA-202ENST00000400000 PPP1R15AO75807 674 aaPredicted RBP18.47■□□□□ 0.55
VAPA-202ENST00000400000 CCDC136Q96JN2 1154 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms