RNA–Protein interactions for RNA: ENST00000370542.1

LMO4-201, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 1,260 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-201ENST00000370542 NISCHQ9Y2I1 1504 aa36.85■■■■□ 3.49
LMO4-201ENST00000370542 ABCC9O60706 1549 aa33.46■■■□□ 2.95
LMO4-201ENST00000370542 CCDC180Q9P1Z9 1646 aa32.99■■■□□ 2.87
LMO4-201ENST00000370542 DNAJC5BQ9UF47 199 aa32.51■■■□□ 2.79
LMO4-201ENST00000370542 RB1CC1Q8TDY2 1594 aa31.35■■■□□ 2.61
LMO4-201ENST00000370542 NACADO15069 1562 aa31.17■■■□□ 2.58
LMO4-201ENST00000370542 PABPN1Q86U42 306 aaKnown RBP eCLIP31.02■■■□□ 2.56
LMO4-201ENST00000370542 MYO15BQ96JP2 1530 aa30.89■■■□□ 2.54
LMO4-201ENST00000370542 DCAF8L2P0C7V8 631 aa30.83■■■□□ 2.53
LMO4-201ENST00000370542 DNAJC5Q9H3Z4 198 aa30.66■■■□□ 2.5
LMO4-201ENST00000370542 UNC13AQ9UPW8 1703 aa30.58■■■□□ 2.49
LMO4-201ENST00000370542 ZCCHC6Q5VYS8 1495 aaKnown RBP30.57■■■□□ 2.48
LMO4-201ENST00000370542 BICRAQ9NZM4 1560 aa30.54■■■□□ 2.48
LMO4-201ENST00000370542 DCAF1Q9Y4B6 1507 aa30.52■■■□□ 2.48
LMO4-201ENST00000370542 CECR2Q9BXF3 1484 aa30.29■■■□□ 2.44
LMO4-201ENST00000370542 CC2D2AQ9P2K1 1620 aa30.17■■■□□ 2.42
LMO4-201ENST00000370542 SHROOM4Q9ULL8 1493 aa30.11■■■□□ 2.41
LMO4-201ENST00000370542 SCRIBQ14160 1630 aa29.95■■■□□ 2.38
LMO4-201ENST00000370542 EIF4G1Q04637 1599 aaKnown RBP29.85■■■□□ 2.37
LMO4-201ENST00000370542 CUX2O14529 1486 aa29.34■■■□□ 2.29
LMO4-201ENST00000370542 ERCC6Q03468 1493 aa28.94■■■□□ 2.22
LMO4-201ENST00000370542 NCAPD3P42695 1498 aa28.82■■■□□ 2.2
LMO4-201ENST00000370542 TRIM41Q8WV44 630 aa28.71■■■□□ 2.19
LMO4-201ENST00000370542 ATAD2BQ9ULI0 1458 aa28.71■■■□□ 2.19
LMO4-201ENST00000370542 SMARCA4P51532 1647 aa28.67■■■□□ 2.18
LMO4-201ENST00000370542 SMARCA2P51531 1590 aa28.61■■■□□ 2.17
LMO4-201ENST00000370542 HMGXB3Q12766 1538 aa28.58■■■□□ 2.17
LMO4-201ENST00000370542 BAZ1AQ9NRL2 1556 aaPredicted RBP28.57■■■□□ 2.16
LMO4-201ENST00000370542 PEG3Q9GZU2 1588 aa28.5■■■□□ 2.15
LMO4-201ENST00000370542 NESP48681 1621 aa28.45■■■□□ 2.14
LMO4-201ENST00000370542 BAZ1BQ9UIG0 1483 aaKnown RBP28.36■■■□□ 2.13
LMO4-201ENST00000370542 MROH2BQ7Z745 1585 aa28.36■■■□□ 2.13
LMO4-201ENST00000370542 THOC2Q8NI27 1593 aaKnown RBP28.36■■■□□ 2.13
LMO4-201ENST00000370542 LAMC3Q9Y6N6 1575 aa28.09■■■□□ 2.09
LMO4-201ENST00000370542 WIZO95785 1651 aa27.98■■■□□ 2.07
LMO4-201ENST00000370542 PDS5BQ9NTI5 1447 aa27.97■■■□□ 2.07
LMO4-201ENST00000370542 KIF21AQ7Z4S6 1674 aa27.94■■■□□ 2.06
LMO4-201ENST00000370542 CADPSQ9ULU8 1353 aa27.91■■■□□ 2.06
LMO4-201ENST00000370542 RSF1Q96T23 1441 aaPredicted RBP27.85■■■□□ 2.05
LMO4-201ENST00000370542 OSCARQ8IYS5 282 aa27.84■■■□□ 2.05
LMO4-201ENST00000370542 MRC2Q9UBG0 1479 aa27.77■■■□□ 2.04
LMO4-201ENST00000370542 WDR62O43379 1518 aa27.76■■■□□ 2.03
LMO4-201ENST00000370542 TOP2AP11388 1531 aaKnown RBP27.68■■■□□ 2.02
LMO4-201ENST00000370542 CFTRP13569 1480 aa27.64■■■□□ 2.01
LMO4-201ENST00000370542 FANCD2Q9BXW9 1451 aa27.54■■■□□ 2
LMO4-201ENST00000370542 CEP164Q9UPV0 1460 aa27.54■■■□□ 2
LMO4-201ENST00000370542 RIMBP3CA6NJZ7 1639 aa27.51■■□□□ 1.99
LMO4-201ENST00000370542 RIMBP3BA6NNM3 1639 aa27.51■■□□□ 1.99
LMO4-201ENST00000370542 RIMBP3Q9UFD9 1639 aa27.51■■□□□ 1.99
LMO4-201ENST00000370542 CCDC88BA6NC98 1476 aa27.38■■□□□ 1.97
LMO4-201ENST00000370542 ARHGEF11O15085 1522 aa27.35■■□□□ 1.97
LMO4-201ENST00000370542 URB2Q14146 1524 aaKnown RBP27.32■■□□□ 1.96
LMO4-201ENST00000370542 PRDM2Q13029 1718 aa27.3■■□□□ 1.96
LMO4-201ENST00000370542 CYB5RLQ6IPT4 315 aa27.24■■□□□ 1.95
LMO4-201ENST00000370542 AEBP2Q6ZN18 517 aaPredicted RBP27.24■■□□□ 1.95
LMO4-201ENST00000370542 TRHP20396 242 aaPredicted RBP27.23■■□□□ 1.95
LMO4-201ENST00000370542 TOPBP1Q92547 1522 aa27.05■■□□□ 1.92
LMO4-201ENST00000370542 ABCC8Q09428 1581 aa27.04■■□□□ 1.92
LMO4-201ENST00000370542 ZNF608Q9ULD9 1512 aaPredicted RBP27.02■■□□□ 1.92
LMO4-201ENST00000370542 ARAP1Q96P48 1450 aa27.02■■□□□ 1.92
LMO4-201ENST00000370542 IFT140Q96RY7 1462 aa27.02■■□□□ 1.92
LMO4-201ENST00000370542 DNMBPQ6XZF7 1577 aa26.96■■□□□ 1.91
LMO4-201ENST00000370542 TARBP1Q13395 1621 aaKnown RBP26.82■■□□□ 1.88
LMO4-201ENST00000370542 POLA1P09884 1462 aaPredicted RBP26.79■■□□□ 1.88
LMO4-201ENST00000370542 EIF4G3O43432 1585 aaKnown RBP26.77■■□□□ 1.88
LMO4-201ENST00000370542 AQRO60306 1485 aaKnown RBP eCLIP26.71■■□□□ 1.87
LMO4-201ENST00000370542 CHD1O14646 1710 aa26.7■■□□□ 1.86
LMO4-201ENST00000370542 RAD54L2Q9Y4B4 1467 aa26.65■■□□□ 1.86
LMO4-201ENST00000370542 SOGA1O94964 1423 aa26.65■■□□□ 1.86
LMO4-201ENST00000370542 FBLN2P98095 1184 aa26.63■■□□□ 1.85
LMO4-201ENST00000370542 CUX1P39880 1505 aa26.63■■□□□ 1.85
LMO4-201ENST00000370542 FGD5Q6ZNL6 1462 aa26.61■■□□□ 1.85
LMO4-201ENST00000370542 WDR97A6NE52 1622 aa26.6■■□□□ 1.85
LMO4-201ENST00000370542 TDRD9Q8NDG6 1382 aaKnown RBP26.56■■□□□ 1.84
LMO4-201ENST00000370542 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
LMO4-201ENST00000370542 CLASP1Q7Z460 1538 aa26.49■■□□□ 1.83
LMO4-201ENST00000370542 SNAPC4Q5SXM2 1469 aa26.42■■□□□ 1.82
LMO4-201ENST00000370542 MAGI1Q96QZ7 1491 aaPredicted RBP26.42■■□□□ 1.82
LMO4-201ENST00000370542 GRIN2BQ13224 1484 aa26.41■■□□□ 1.82
LMO4-201ENST00000370542 ABCA10Q8WWZ4 1543 aa26.38■■□□□ 1.81
LMO4-201ENST00000370542 GAPVD1Q14C86 1478 aa26.33■■□□□ 1.81
LMO4-201ENST00000370542 SYNJ2O15056 1496 aa26.31■■□□□ 1.8
LMO4-201ENST00000370542 ILDR1Q86SU0 546 aaPredicted RBP26.31■■□□□ 1.8
LMO4-201ENST00000370542 SYNJ1O43426 1573 aa26.31■■□□□ 1.8
LMO4-201ENST00000370542 CHMP7Q8WUX9 453 aaPredicted RBP26.3■■□□□ 1.8
LMO4-201ENST00000370542 ABCA5Q8WWZ7 1642 aa26.29■■□□□ 1.8
LMO4-201ENST00000370542 PBRM1Q86U86 1689 aa26.26■■□□□ 1.79
LMO4-201ENST00000370542 TOP2BQ02880 1626 aa26.25■■□□□ 1.79
LMO4-201ENST00000370542 BIVM-ERCC5R4GMW8 1640 aa26.25■■□□□ 1.79
LMO4-201ENST00000370542 WRNQ14191 1432 aaPredicted RBP eCLIP26.25■■□□□ 1.79
LMO4-201ENST00000370542 GRIN2AQ12879 1464 aa26.07■■□□□ 1.76
LMO4-201ENST00000370542 ADAMTS12P58397 1594 aa26.06■■□□□ 1.76
LMO4-201ENST00000370542 ERICH3Q5RHP9 1530 aa26.04■■□□□ 1.76
LMO4-201ENST00000370542 NUP160Q12769 1436 aa26.04■■□□□ 1.76
LMO4-201ENST00000370542 FHAD1B1AJZ9 1412 aa26.02■■□□□ 1.76
LMO4-201ENST00000370542 KDM4FA0A1W2PPD8 638 aa26■■□□□ 1.75
LMO4-201ENST00000370542 ERCC6L2Q5T890 1561 aa25.98■■□□□ 1.75
LMO4-201ENST00000370542 CEP170Q5SW79 1584 aa25.95■■□□□ 1.75
LMO4-201ENST00000370542 KIF13AQ9H1H9 1805 aa25.91■■□□□ 1.74
LMO4-201ENST00000370542 SHROOM2Q13796 1616 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms