RNA–Protein interactions for RNA: ENST00000638883.1

NECAP1-213, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 3,940 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-213ENST00000638883 AEBP2Q6ZN18 517 aaPredicted RBP16.9■□□□□ 0.3
NECAP1-213ENST00000638883 CHIC1Q5VXU3 224 aa16.88■□□□□ 0.29
NECAP1-213ENST00000638883 NISCHQ9Y2I1 1504 aa15.32■□□□□ 0.04
NECAP1-213ENST00000638883 PHF23Q9BUL5 403 aaPredicted RBP15.3■□□□□ 0.04
NECAP1-213ENST00000638883 CCDC180Q9P1Z9 1646 aa14□□□□□ -0.17
NECAP1-213ENST00000638883 PLPPR3Q6T4P5 718 aa13.73□□□□□ -0.21
NECAP1-213ENST00000638883 SENP3Q9H4L4 574 aaPredicted RBP13.58□□□□□ -0.24
NECAP1-213ENST00000638883 ADRA2BP18089 450 aa13.28□□□□□ -0.28
NECAP1-213ENST00000638883 UNC13AQ9UPW8 1703 aa13.18□□□□□ -0.3
NECAP1-213ENST00000638883 DCAF1Q9Y4B6 1507 aa13.17□□□□□ -0.3
NECAP1-213ENST00000638883 PPP6R1Q9UPN7 881 aa13.16□□□□□ -0.3
NECAP1-213ENST00000638883 ZCCHC6Q5VYS8 1495 aaKnown RBP13.12□□□□□ -0.31
NECAP1-213ENST00000638883 MYO15BQ96JP2 1530 aa13.05□□□□□ -0.32
NECAP1-213ENST00000638883 KCNA4P22459 653 aa13.03□□□□□ -0.32
NECAP1-213ENST00000638883 FOXD1Q16676 465 aa12.87□□□□□ -0.35
NECAP1-213ENST00000638883 CSRNP3Q8WYN3 585 aa12.67□□□□□ -0.38
NECAP1-213ENST00000638883 EHMT2Q96KQ7 1210 aa12.59□□□□□ -0.39
NECAP1-213ENST00000638883 BICRAQ9NZM4 1560 aa12.57□□□□□ -0.4
NECAP1-213ENST00000638883 EIF4G1Q04637 1599 aaKnown RBP12.51□□□□□ -0.41
NECAP1-213ENST00000638883 NACADO15069 1562 aa12.42□□□□□ -0.42
NECAP1-213ENST00000638883 ABCC9O60706 1549 aa12.42□□□□□ -0.42
NECAP1-213ENST00000638883 ZBTB22O15209 634 aa12.4□□□□□ -0.42
NECAP1-213ENST00000638883 PELP1Q8IZL8 1130 aaKnown RBP12.33□□□□□ -0.44
NECAP1-213ENST00000638883 PEG3Q9GZU2 1588 aa12.31□□□□□ -0.44
NECAP1-213ENST00000638883 PPP4R3CPQ6ZMV5 832 aa12.28□□□□□ -0.44
NECAP1-213ENST00000638883 NPM3O75607 178 aaKnown RBP12.19□□□□□ -0.46
NECAP1-213ENST00000638883 DNAJC5BQ9UF47 199 aa12.18□□□□□ -0.46
NECAP1-213ENST00000638883 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
NECAP1-213ENST00000638883 PRDM2Q13029 1718 aa12.12□□□□□ -0.47
NECAP1-213ENST00000638883 SHROOM4Q9ULL8 1493 aa12.11□□□□□ -0.47
NECAP1-213ENST00000638883 RB1CC1Q8TDY2 1594 aa12.09□□□□□ -0.47
NECAP1-213ENST00000638883 MYT1Q01538 1121 aa12.06□□□□□ -0.48
NECAP1-213ENST00000638883 SCRIBQ14160 1630 aa11.99□□□□□ -0.49
NECAP1-213ENST00000638883 BAZ1AQ9NRL2 1556 aaPredicted RBP11.97□□□□□ -0.49
NECAP1-213ENST00000638883 SMARCA4P51532 1647 aa11.96□□□□□ -0.49
NECAP1-213ENST00000638883 PIAS4Q8N2W9 510 aaPredicted RBP11.91□□□□□ -0.5
NECAP1-213ENST00000638883 WIZO95785 1651 aa11.88□□□□□ -0.51
NECAP1-213ENST00000638883 MROH2BQ7Z745 1585 aa11.82□□□□□ -0.52
NECAP1-213ENST00000638883 HRCP23327 699 aa11.79□□□□□ -0.52
NECAP1-213ENST00000638883 NCBP3Q53F19 620 aaKnown RBP11.74□□□□□ -0.53
NECAP1-213ENST00000638883 CNKSR2Q8WXI2 1034 aa11.74□□□□□ -0.53
NECAP1-213ENST00000638883 CECR2Q9BXF3 1484 aa11.73□□□□□ -0.53
NECAP1-213ENST00000638883 SMARCA2P51531 1590 aa11.72□□□□□ -0.53
NECAP1-213ENST00000638883 WDR97A6NE52 1622 aa11.7□□□□□ -0.54
NECAP1-213ENST00000638883 DCAF8L2P0C7V8 631 aa11.69□□□□□ -0.54
NECAP1-213ENST00000638883 HMGXB3Q12766 1538 aa11.67□□□□□ -0.54
NECAP1-213ENST00000638883 TOP2AP11388 1531 aaKnown RBP11.66□□□□□ -0.54
NECAP1-213ENST00000638883 RSF1Q96T23 1441 aaPredicted RBP11.65□□□□□ -0.54
NECAP1-213ENST00000638883 PPARGC1BQ86YN6 1023 aaKnown RBP11.59□□□□□ -0.55
NECAP1-213ENST00000638883 BIVM-ERCC5R4GMW8 1640 aa11.58□□□□□ -0.56
NECAP1-213ENST00000638883 MAPK8IP2Q13387 824 aaPredicted RBP11.58□□□□□ -0.56
NECAP1-213ENST00000638883 SLC4A2P04920 1241 aa11.56□□□□□ -0.56
NECAP1-213ENST00000638883 RTN4Q9NQC3 1192 aaKnown RBP11.56□□□□□ -0.56
NECAP1-213ENST00000638883 PCGF6Q9BYE7 350 aa11.54□□□□□ -0.56
NECAP1-213ENST00000638883 FOXD4L1Q9NU39 408 aa11.53□□□□□ -0.56
NECAP1-213ENST00000638883 RNF216Q9NWF9 866 aaPredicted RBP11.46□□□□□ -0.58
NECAP1-213ENST00000638883 CC2D2AQ9P2K1 1620 aa11.41□□□□□ -0.58
NECAP1-213ENST00000638883 HOXD11P31277 338 aaPredicted RBP11.4□□□□□ -0.58
NECAP1-213ENST00000638883 SCAF1Q9H7N4 1312 aaKnown RBP11.4□□□□□ -0.59
NECAP1-213ENST00000638883 ATAD2BQ9ULI0 1458 aa11.39□□□□□ -0.59
NECAP1-213ENST00000638883 NCAPD3P42695 1498 aa11.37□□□□□ -0.59
NECAP1-213ENST00000638883 TTBK1Q5TCY1 1321 aaPredicted RBP11.35□□□□□ -0.59
NECAP1-213ENST00000638883 SLC24A1O60721 1099 aa11.34□□□□□ -0.59
NECAP1-213ENST00000638883 KIF21AQ7Z4S6 1674 aa11.32□□□□□ -0.6
NECAP1-213ENST00000638883 SYNJ1O43426 1573 aa11.29□□□□□ -0.6
NECAP1-213ENST00000638883 SUPT5HO00267 1087 aaKnown RBP11.29□□□□□ -0.6
NECAP1-213ENST00000638883 THOC2Q8NI27 1593 aaKnown RBP11.27□□□□□ -0.61
NECAP1-213ENST00000638883 CCDC88BA6NC98 1476 aa11.27□□□□□ -0.61
NECAP1-213ENST00000638883 TOP2BQ02880 1626 aa11.27□□□□□ -0.61
NECAP1-213ENST00000638883 LRRIQ1Q96JM4 1722 aa11.26□□□□□ -0.61
NECAP1-213ENST00000638883 DMRT2Q9Y5R5 561 aa11.22□□□□□ -0.61
NECAP1-213ENST00000638883 TARBP1Q13395 1621 aaKnown RBP11.21□□□□□ -0.61
NECAP1-213ENST00000638883 AMER1Q5JTC6 1135 aaPredicted RBP11.21□□□□□ -0.61
NECAP1-213ENST00000638883 ABCA5Q8WWZ7 1642 aa11.18□□□□□ -0.62
NECAP1-213ENST00000638883 MSH5O43196 834 aa11.15□□□□□ -0.62
NECAP1-213ENST00000638883 ATXN8OSP0DMR3 200 aa11.15□□□□□ -0.62
NECAP1-213ENST00000638883 ATF5Q9Y2D1 282 aaPredicted RBP11.15□□□□□ -0.62
NECAP1-213ENST00000638883 CENPBP07199 599 aaPredicted RBP11.15□□□□□ -0.62
NECAP1-213ENST00000638883 CFTRP13569 1480 aa11.14□□□□□ -0.63
NECAP1-213ENST00000638883 GTF3C3Q9Y5Q9 886 aa11.11□□□□□ -0.63
NECAP1-213ENST00000638883 CUX1P39880 1505 aa11.1□□□□□ -0.63
NECAP1-213ENST00000638883 ZEB1P37275 1124 aaPredicted RBP11.08□□□□□ -0.64
NECAP1-213ENST00000638883 LAMC3Q9Y6N6 1575 aa11.08□□□□□ -0.64
NECAP1-213ENST00000638883 BCL11AQ9H165 835 aa11.07□□□□□ -0.64
NECAP1-213ENST00000638883 ACIN1Q9UKV3 1341 aaKnown RBP11.07□□□□□ -0.64
NECAP1-213ENST00000638883 PBRM1Q86U86 1689 aa11.07□□□□□ -0.64
NECAP1-213ENST00000638883 ABCC8Q09428 1581 aa11.03□□□□□ -0.64
NECAP1-213ENST00000638883 KIF21BO75037 1637 aa11.02□□□□□ -0.64
NECAP1-213ENST00000638883 WDR62O43379 1518 aa11□□□□□ -0.65
NECAP1-213ENST00000638883 NEUROD1Q13562 356 aa10.99□□□□□ -0.65
NECAP1-213ENST00000638883 ERICH6Q7L0X2 663 aa10.96□□□□□ -0.66
NECAP1-213ENST00000638883 MYCNP04198 464 aaPredicted RBP10.95□□□□□ -0.66
NECAP1-213ENST00000638883 CTTNBP2Q8WZ74 1663 aa10.95□□□□□ -0.66
NECAP1-213ENST00000638883 PRKCSHP14314 528 aaPredicted RBP10.94□□□□□ -0.66
NECAP1-213ENST00000638883 FKBP8Q14318 412 aa10.92□□□□□ -0.66
NECAP1-213ENST00000638883 DNMBPQ6XZF7 1577 aa10.91□□□□□ -0.66
NECAP1-213ENST00000638883 TRIM26Q12899 539 aaPredicted RBP10.91□□□□□ -0.66
NECAP1-213ENST00000638883 PROM2Q8N271 834 aa10.9□□□□□ -0.66
NECAP1-213ENST00000638883 BAZ1BQ9UIG0 1483 aaKnown RBP10.9□□□□□ -0.66
NECAP1-213ENST00000638883 URB2Q14146 1524 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms