RNA–Protein interactions for RNA: ENST00000639167.1

NECAP1-216, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5 BASIC

Gene NECAP1, Length 2,197 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-216ENST00000639167 NISCHQ9Y2I1 1504 aa22.3■■□□□ 1.16
NECAP1-216ENST00000639167 SHROOM4Q9ULL8 1493 aa18.99■□□□□ 0.63
NECAP1-216ENST00000639167 CCDC180Q9P1Z9 1646 aa18.99■□□□□ 0.63
NECAP1-216ENST00000639167 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
NECAP1-216ENST00000639167 DCAF8L2P0C7V8 631 aa18.59■□□□□ 0.57
NECAP1-216ENST00000639167 SUPT5HO00267 1087 aaKnown RBP18.57■□□□□ 0.56
NECAP1-216ENST00000639167 DCAF1Q9Y4B6 1507 aa18.27■□□□□ 0.51
NECAP1-216ENST00000639167 CHIC1Q5VXU3 224 aa17.97■□□□□ 0.47
NECAP1-216ENST00000639167 MYO15BQ96JP2 1530 aa17.88■□□□□ 0.45
NECAP1-216ENST00000639167 SCRIBQ14160 1630 aa17.83■□□□□ 0.45
NECAP1-216ENST00000639167 ABCC9O60706 1549 aa17.75■□□□□ 0.43
NECAP1-216ENST00000639167 RSF1Q96T23 1441 aaPredicted RBP17.61■□□□□ 0.41
NECAP1-216ENST00000639167 NACADO15069 1562 aa17.59■□□□□ 0.41
NECAP1-216ENST00000639167 LOC105371045A0A1W2PR82 267 aa17.46■□□□□ 0.39
NECAP1-216ENST00000639167 CECR2Q9BXF3 1484 aa17.44■□□□□ 0.38
NECAP1-216ENST00000639167 RB1CC1Q8TDY2 1594 aa17.43■□□□□ 0.38
NECAP1-216ENST00000639167 MROH2BQ7Z745 1585 aa17.35■□□□□ 0.37
NECAP1-216ENST00000639167 PCGF6Q9BYE7 350 aa17.31■□□□□ 0.36
NECAP1-216ENST00000639167 TRIM41Q8WV44 630 aa17.28■□□□□ 0.36
NECAP1-216ENST00000639167 WIZO95785 1651 aa17.26■□□□□ 0.35
NECAP1-216ENST00000639167 HRCP23327 699 aa17.21■□□□□ 0.34
NECAP1-216ENST00000639167 FAM9AQ8IZU1 332 aaPredicted RBP17.18■□□□□ 0.34
NECAP1-216ENST00000639167 BAZ1AQ9NRL2 1556 aaPredicted RBP17.13■□□□□ 0.33
NECAP1-216ENST00000639167 UNC13AQ9UPW8 1703 aa17.08■□□□□ 0.33
NECAP1-216ENST00000639167 EHMT2Q96KQ7 1210 aa17.06■□□□□ 0.32
NECAP1-216ENST00000639167 SMARCA4P51532 1647 aa17.01■□□□□ 0.31
NECAP1-216ENST00000639167 TRIM26Q12899 539 aaPredicted RBP16.98■□□□□ 0.31
NECAP1-216ENST00000639167 PABPN1Q86U42 306 aaKnown RBP eCLIP16.97■□□□□ 0.31
NECAP1-216ENST00000639167 TOP2AP11388 1531 aaKnown RBP16.97■□□□□ 0.31
NECAP1-216ENST00000639167 EIF4G1Q04637 1599 aaKnown RBP16.95■□□□□ 0.3
NECAP1-216ENST00000639167 PPARGC1BQ86YN6 1023 aaKnown RBP16.92■□□□□ 0.3
NECAP1-216ENST00000639167 CCDC88BA6NC98 1476 aa16.9■□□□□ 0.3
NECAP1-216ENST00000639167 BICRAQ9NZM4 1560 aa16.88■□□□□ 0.29
NECAP1-216ENST00000639167 SMARCA2P51531 1590 aa16.87■□□□□ 0.29
NECAP1-216ENST00000639167 ABCC8Q09428 1581 aa16.84■□□□□ 0.29
NECAP1-216ENST00000639167 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
NECAP1-216ENST00000639167 SOGA1O94964 1423 aa16.66■□□□□ 0.26
NECAP1-216ENST00000639167 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
NECAP1-216ENST00000639167 RUSC2Q8N2Y8 1516 aa16.59■□□□□ 0.25
NECAP1-216ENST00000639167 BAZ1BQ9UIG0 1483 aaKnown RBP16.56■□□□□ 0.24
NECAP1-216ENST00000639167 WRNQ14191 1432 aaPredicted RBP eCLIP16.55■□□□□ 0.24
NECAP1-216ENST00000639167 CSRNP3Q8WYN3 585 aa16.55■□□□□ 0.24
NECAP1-216ENST00000639167 ZEB1P37275 1124 aaPredicted RBP16.54■□□□□ 0.24
NECAP1-216ENST00000639167 CEP162Q5TB80 1403 aa16.52■□□□□ 0.23
NECAP1-216ENST00000639167 EEA1Q15075 1411 aa16.51■□□□□ 0.23
NECAP1-216ENST00000639167 UBTFP17480 764 aaKnown RBP16.49■□□□□ 0.23
NECAP1-216ENST00000639167 TNIKQ9UKE5 1360 aa16.49■□□□□ 0.23
NECAP1-216ENST00000639167 SYNJ1O43426 1573 aa16.48■□□□□ 0.23
NECAP1-216ENST00000639167 TTBK1Q5TCY1 1321 aaPredicted RBP16.47■□□□□ 0.23
NECAP1-216ENST00000639167 GOLGA3Q08378 1498 aa16.42■□□□□ 0.22
NECAP1-216ENST00000639167 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.37■□□□□ 0.21
NECAP1-216ENST00000639167 CEP164Q9UPV0 1460 aa16.33■□□□□ 0.2
NECAP1-216ENST00000639167 CCER1Q8TC90 406 aaPredicted RBP16.3■□□□□ 0.2
NECAP1-216ENST00000639167 KIF21BO75037 1637 aa16.3■□□□□ 0.2
NECAP1-216ENST00000639167 NCAPD3P42695 1498 aa16.29■□□□□ 0.2
NECAP1-216ENST00000639167 SLC24A1O60721 1099 aa16.28■□□□□ 0.2
NECAP1-216ENST00000639167 HMGXB3Q12766 1538 aa16.27■□□□□ 0.2
NECAP1-216ENST00000639167 TOP2BQ02880 1626 aa16.27■□□□□ 0.19
NECAP1-216ENST00000639167 RAPGEF2Q9Y4G8 1499 aa16.25■□□□□ 0.19
NECAP1-216ENST00000639167 CLIP1P30622 1438 aa16.24■□□□□ 0.19
NECAP1-216ENST00000639167 RANGAP1P46060 587 aaPredicted RBP16.23■□□□□ 0.19
NECAP1-216ENST00000639167 BIVM-ERCC5R4GMW8 1640 aa16.21■□□□□ 0.19
NECAP1-216ENST00000639167 CUX1P39880 1505 aa16.15■□□□□ 0.18
NECAP1-216ENST00000639167 VPS8Q8N3P4 1428 aa16.14■□□□□ 0.17
NECAP1-216ENST00000639167 CFTRP13569 1480 aa16.13■□□□□ 0.17
NECAP1-216ENST00000639167 APLP2Q06481 763 aa16.09■□□□□ 0.17
NECAP1-216ENST00000639167 PRXQ9BXM0 1461 aa16.08■□□□□ 0.17
NECAP1-216ENST00000639167 HNRNPUL2Q1KMD3 747 aaKnown RBP16.07■□□□□ 0.16
NECAP1-216ENST00000639167 ERICH3Q5RHP9 1530 aa16.06■□□□□ 0.16
NECAP1-216ENST00000639167 KIF27Q86VH2 1401 aa16.04■□□□□ 0.16
NECAP1-216ENST00000639167 ARAP1Q96P48 1450 aa15.99■□□□□ 0.15
NECAP1-216ENST00000639167 CADPSQ9ULU8 1353 aa15.99■□□□□ 0.15
NECAP1-216ENST00000639167 PRDM2Q13029 1718 aa15.97■□□□□ 0.15
NECAP1-216ENST00000639167 CC2D2AQ9P2K1 1620 aa15.96■□□□□ 0.15
NECAP1-216ENST00000639167 CUX2O14529 1486 aa15.94■□□□□ 0.14
NECAP1-216ENST00000639167 KANK4Q5T7N3 995 aaPredicted RBP15.91■□□□□ 0.14
NECAP1-216ENST00000639167 DIEXFQ68CQ4 756 aaKnown RBP15.9■□□□□ 0.14
NECAP1-216ENST00000639167 FGD5Q6ZNL6 1462 aa15.9■□□□□ 0.14
NECAP1-216ENST00000639167 IGF1RP08069 1367 aa15.89■□□□□ 0.13
NECAP1-216ENST00000639167 ARHGAP35Q9NRY4 1499 aa15.87■□□□□ 0.13
NECAP1-216ENST00000639167 FANCD2Q9BXW9 1451 aa15.84■□□□□ 0.13
NECAP1-216ENST00000639167 CARMIL1Q5VZK9 1371 aa15.82■□□□□ 0.12
NECAP1-216ENST00000639167 ZNF316A6NFI3 1004 aaPredicted RBP15.82■□□□□ 0.12
NECAP1-216ENST00000639167 SCAF1Q9H7N4 1312 aaKnown RBP15.79■□□□□ 0.12
NECAP1-216ENST00000639167 NESP48681 1621 aa15.79■□□□□ 0.12
NECAP1-216ENST00000639167 RAD54L2Q9Y4B4 1467 aa15.76■□□□□ 0.11
NECAP1-216ENST00000639167 RRBP1Q9P2E9 1410 aaKnown RBP15.74■□□□□ 0.11
NECAP1-216ENST00000639167 DNMBPQ6XZF7 1577 aa15.73■□□□□ 0.11
NECAP1-216ENST00000639167 TOPBP1Q92547 1522 aa15.72■□□□□ 0.11
NECAP1-216ENST00000639167 P3H3Q8IVL6 736 aa15.72■□□□□ 0.11
NECAP1-216ENST00000639167 POLA1P09884 1462 aaPredicted RBP15.71■□□□□ 0.11
NECAP1-216ENST00000639167 DHX57Q6P158 1386 aaKnown RBP15.71■□□□□ 0.11
NECAP1-216ENST00000639167 ITGAEP38570 1179 aa15.7■□□□□ 0.1
NECAP1-216ENST00000639167 CCNB3Q8WWL7 1395 aa15.7■□□□□ 0.1
NECAP1-216ENST00000639167 NEUROD1Q13562 356 aa15.69■□□□□ 0.1
NECAP1-216ENST00000639167 ABCA10Q8WWZ4 1543 aa15.68■□□□□ 0.1
NECAP1-216ENST00000639167 ACIN1Q9UKV3 1341 aaKnown RBP15.68■□□□□ 0.1
NECAP1-216ENST00000639167 TIAM1Q13009 1591 aa15.66■□□□□ 0.1
NECAP1-216ENST00000639167 ATP1B4Q9UN42 357 aaPredicted RBP15.65■□□□□ 0.1
NECAP1-216ENST00000639167 DNAJC5BQ9UF47 199 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms