RNA–Protein interactions for RNA: ENST00000436654.1

CTDSPL-205, Transcript of CTD small phosphatase like, humanhuman

TSL 3

Gene CTDSPL, Length 804 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL-205ENST00000436654 NISCHQ9Y2I1 1504 aa22.12■■□□□ 1.13
CTDSPL-205ENST00000436654 ABCC9O60706 1549 aa19.81■□□□□ 0.76
CTDSPL-205ENST00000436654 CCDC180Q9P1Z9 1646 aa19.73■□□□□ 0.75
CTDSPL-205ENST00000436654 RB1CC1Q8TDY2 1594 aa18.81■□□□□ 0.6
CTDSPL-205ENST00000436654 DNAJC5BQ9UF47 199 aa18.8■□□□□ 0.6
CTDSPL-205ENST00000436654 DCAF8L2P0C7V8 631 aa18.77■□□□□ 0.6
CTDSPL-205ENST00000436654 NACADO15069 1562 aa18.68■□□□□ 0.58
CTDSPL-205ENST00000436654 PABPN1Q86U42 306 aaKnown RBP eCLIP18.51■□□□□ 0.55
CTDSPL-205ENST00000436654 MYO15BQ96JP2 1530 aa18.43■□□□□ 0.54
CTDSPL-205ENST00000436654 ZCCHC6Q5VYS8 1495 aaKnown RBP18.35■□□□□ 0.53
CTDSPL-205ENST00000436654 UNC13AQ9UPW8 1703 aa18.27■□□□□ 0.52
CTDSPL-205ENST00000436654 BICRAQ9NZM4 1560 aa18.26■□□□□ 0.51
CTDSPL-205ENST00000436654 DCAF1Q9Y4B6 1507 aa18.23■□□□□ 0.51
CTDSPL-205ENST00000436654 SCRIBQ14160 1630 aa18.08■□□□□ 0.48
CTDSPL-205ENST00000436654 SHROOM4Q9ULL8 1493 aa17.99■□□□□ 0.47
CTDSPL-205ENST00000436654 CC2D2AQ9P2K1 1620 aa17.83■□□□□ 0.45
CTDSPL-205ENST00000436654 CECR2Q9BXF3 1484 aa17.82■□□□□ 0.44
CTDSPL-205ENST00000436654 EIF4G1Q04637 1599 aaKnown RBP17.82■□□□□ 0.44
CTDSPL-205ENST00000436654 DNAJC5Q9H3Z4 198 aa17.73■□□□□ 0.43
CTDSPL-205ENST00000436654 NCAPD3P42695 1498 aa17.29■□□□□ 0.36
CTDSPL-205ENST00000436654 ATAD2BQ9ULI0 1458 aa17.26■□□□□ 0.35
CTDSPL-205ENST00000436654 SMARCA4P51532 1647 aa17.22■□□□□ 0.35
CTDSPL-205ENST00000436654 CUX2O14529 1486 aa17.2■□□□□ 0.34
CTDSPL-205ENST00000436654 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
CTDSPL-205ENST00000436654 BAZ1AQ9NRL2 1556 aaPredicted RBP17.15■□□□□ 0.34
CTDSPL-205ENST00000436654 HMGXB3Q12766 1538 aa17.13■□□□□ 0.33
CTDSPL-205ENST00000436654 ERCC6Q03468 1493 aa17.1■□□□□ 0.33
CTDSPL-205ENST00000436654 BAZ1BQ9UIG0 1483 aaKnown RBP17.1■□□□□ 0.33
CTDSPL-205ENST00000436654 MROH2BQ7Z745 1585 aa17.06■□□□□ 0.32
CTDSPL-205ENST00000436654 NESP48681 1621 aa17.03■□□□□ 0.32
CTDSPL-205ENST00000436654 PEG3Q9GZU2 1588 aa17.02■□□□□ 0.32
CTDSPL-205ENST00000436654 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
CTDSPL-205ENST00000436654 WIZO95785 1651 aa16.83■□□□□ 0.28
CTDSPL-205ENST00000436654 PDS5BQ9NTI5 1447 aa16.8■□□□□ 0.28
CTDSPL-205ENST00000436654 CADPSQ9ULU8 1353 aa16.79■□□□□ 0.28
CTDSPL-205ENST00000436654 THOC2Q8NI27 1593 aaKnown RBP16.77■□□□□ 0.28
CTDSPL-205ENST00000436654 RSF1Q96T23 1441 aaPredicted RBP16.76■□□□□ 0.27
CTDSPL-205ENST00000436654 TRIM41Q8WV44 630 aa16.72■□□□□ 0.27
CTDSPL-205ENST00000436654 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
CTDSPL-205ENST00000436654 MRC2Q9UBG0 1479 aa16.65■□□□□ 0.26
CTDSPL-205ENST00000436654 TOP2AP11388 1531 aaKnown RBP16.63■□□□□ 0.25
CTDSPL-205ENST00000436654 CEP164Q9UPV0 1460 aa16.61■□□□□ 0.25
CTDSPL-205ENST00000436654 CFTRP13569 1480 aa16.6■□□□□ 0.25
CTDSPL-205ENST00000436654 FANCD2Q9BXW9 1451 aa16.6■□□□□ 0.25
CTDSPL-205ENST00000436654 WDR62O43379 1518 aa16.58■□□□□ 0.24
CTDSPL-205ENST00000436654 CCDC88BA6NC98 1476 aa16.48■□□□□ 0.23
CTDSPL-205ENST00000436654 URB2Q14146 1524 aaKnown RBP16.46■□□□□ 0.23
CTDSPL-205ENST00000436654 OSCARQ8IYS5 282 aa16.28■□□□□ 0.2
CTDSPL-205ENST00000436654 TOPBP1Q92547 1522 aa16.28■□□□□ 0.2
CTDSPL-205ENST00000436654 PRDM2Q13029 1718 aa16.27■□□□□ 0.19
CTDSPL-205ENST00000436654 ZNF608Q9ULD9 1512 aaPredicted RBP16.26■□□□□ 0.19
CTDSPL-205ENST00000436654 IFT140Q96RY7 1462 aa16.26■□□□□ 0.19
CTDSPL-205ENST00000436654 ABCC8Q09428 1581 aa16.21■□□□□ 0.19
CTDSPL-205ENST00000436654 DNMBPQ6XZF7 1577 aa16.2■□□□□ 0.18
CTDSPL-205ENST00000436654 SUPT5HO00267 1087 aaKnown RBP16.15■□□□□ 0.18
CTDSPL-205ENST00000436654 RIMBP3CA6NJZ7 1639 aa16.13■□□□□ 0.17
CTDSPL-205ENST00000436654 RIMBP3BA6NNM3 1639 aa16.13■□□□□ 0.17
CTDSPL-205ENST00000436654 RIMBP3Q9UFD9 1639 aa16.13■□□□□ 0.17
CTDSPL-205ENST00000436654 AQRO60306 1485 aaKnown RBP eCLIP16.13■□□□□ 0.174e-11■■■■■ 43.5
CTDSPL-205ENST00000436654 POLA1P09884 1462 aaPredicted RBP16.13■□□□□ 0.17
CTDSPL-205ENST00000436654 EIF4G3O43432 1585 aaKnown RBP16.12■□□□□ 0.17
CTDSPL-205ENST00000436654 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
CTDSPL-205ENST00000436654 TARBP1Q13395 1621 aaKnown RBP16.09■□□□□ 0.17
CTDSPL-205ENST00000436654 SOGA1O94964 1423 aa16.07■□□□□ 0.16
CTDSPL-205ENST00000436654 TDRD9Q8NDG6 1382 aaKnown RBP16.06■□□□□ 0.16
CTDSPL-205ENST00000436654 FBLN2P98095 1184 aa16.06■□□□□ 0.16
CTDSPL-205ENST00000436654 ARHGEF11O15085 1522 aa16.04■□□□□ 0.16
CTDSPL-205ENST00000436654 FGD5Q6ZNL6 1462 aa16.03■□□□□ 0.16
CTDSPL-205ENST00000436654 CUX1P39880 1505 aa16.03■□□□□ 0.16
CTDSPL-205ENST00000436654 SNAPC4Q5SXM2 1469 aa15.96■□□□□ 0.14
CTDSPL-205ENST00000436654 CHD1O14646 1710 aa15.94■□□□□ 0.14
CTDSPL-205ENST00000436654 CYB5RLQ6IPT4 315 aa15.93■□□□□ 0.14
CTDSPL-205ENST00000436654 CHMP7Q8WUX9 453 aaPredicted RBP15.92■□□□□ 0.14
CTDSPL-205ENST00000436654 GRIN2BQ13224 1484 aa15.91■□□□□ 0.14
CTDSPL-205ENST00000436654 TRHP20396 242 aaPredicted RBP15.89■□□□□ 0.13
CTDSPL-205ENST00000436654 WDR97A6NE52 1622 aa15.89■□□□□ 0.13
CTDSPL-205ENST00000436654 MAGI1Q96QZ7 1491 aaPredicted RBP15.87■□□□□ 0.13
CTDSPL-205ENST00000436654 AEBP2Q6ZN18 517 aaPredicted RBP15.87■□□□□ 0.13
CTDSPL-205ENST00000436654 GAPVD1Q14C86 1478 aa15.86■□□□□ 0.13
CTDSPL-205ENST00000436654 ARAP1Q96P48 1450 aa15.85■□□□□ 0.13
CTDSPL-205ENST00000436654 SYNJ2O15056 1496 aa15.84■□□□□ 0.13
CTDSPL-205ENST00000436654 ABCA10Q8WWZ4 1543 aa15.84■□□□□ 0.13
CTDSPL-205ENST00000436654 WRNQ14191 1432 aaPredicted RBP eCLIP15.82■□□□□ 0.12
CTDSPL-205ENST00000436654 SYNJ1O43426 1573 aa15.8■□□□□ 0.12
CTDSPL-205ENST00000436654 CLASP1Q7Z460 1538 aa15.8■□□□□ 0.12
CTDSPL-205ENST00000436654 ABCA5Q8WWZ7 1642 aa15.78■□□□□ 0.12
CTDSPL-205ENST00000436654 PBRM1Q86U86 1689 aa15.76■□□□□ 0.11
CTDSPL-205ENST00000436654 TOP2BQ02880 1626 aa15.75■□□□□ 0.11
CTDSPL-205ENST00000436654 BIVM-ERCC5R4GMW8 1640 aa15.72■□□□□ 0.11
CTDSPL-205ENST00000436654 GRIN2AQ12879 1464 aa15.7■□□□□ 0.1
CTDSPL-205ENST00000436654 ADAMTS12P58397 1594 aa15.67■□□□□ 0.1
CTDSPL-205ENST00000436654 FHAD1B1AJZ9 1412 aa15.67■□□□□ 0.1
CTDSPL-205ENST00000436654 NUP160Q12769 1436 aa15.64■□□□□ 0.09
CTDSPL-205ENST00000436654 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
CTDSPL-205ENST00000436654 CEP170Q5SW79 1584 aa15.62■□□□□ 0.09
CTDSPL-205ENST00000436654 ERCC6L2Q5T890 1561 aa15.6■□□□□ 0.09
CTDSPL-205ENST00000436654 JPH4Q96JJ6 628 aa15.52■□□□□ 0.08
CTDSPL-205ENST00000436654 PRG4Q92954 1404 aaPredicted RBP15.51■□□□□ 0.07
CTDSPL-205ENST00000436654 IGF1RP08069 1367 aa15.5■□□□□ 0.07
CTDSPL-205ENST00000436654 SHROOM2Q13796 1616 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms