RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 DCAF8L2P0C7V8 631 aa34.4■■■■□ 3.1
LMO4-202ENST00000370544 NISCHQ9Y2I1 1504 aa33.25■■■□□ 2.91
LMO4-202ENST00000370544 SUPT5HO00267 1087 aaKnown RBP32.65■■■□□ 2.82
LMO4-202ENST00000370544 SHROOM4Q9ULL8 1493 aa32.2■■■□□ 2.74
LMO4-202ENST00000370544 EHMT2Q96KQ7 1210 aa31.53■■■□□ 2.64
LMO4-202ENST00000370544 APLP2Q06481 763 aa30.97■■■□□ 2.55
LMO4-202ENST00000370544 FAM9AQ8IZU1 332 aaPredicted RBP30.78■■■□□ 2.52
LMO4-202ENST00000370544 PELP1Q8IZL8 1130 aaKnown RBP30.53■■■□□ 2.48
LMO4-202ENST00000370544 TTBK1Q5TCY1 1321 aaPredicted RBP30.46■■■□□ 2.47
LMO4-202ENST00000370544 PCGF6Q9BYE7 350 aa30.33■■■□□ 2.45
LMO4-202ENST00000370544 TRIM41Q8WV44 630 aa30.29■■■□□ 2.44
LMO4-202ENST00000370544 RANGAP1P46060 587 aaPredicted RBP30.21■■■□□ 2.43
LMO4-202ENST00000370544 ATP1B4Q9UN42 357 aaPredicted RBP29.94■■■□□ 2.38
LMO4-202ENST00000370544 UBTFP17480 764 aaKnown RBP29.9■■■□□ 2.38
LMO4-202ENST00000370544 ZEB1P37275 1124 aaPredicted RBP29.87■■■□□ 2.37
LMO4-202ENST00000370544 CCER1Q8TC90 406 aaPredicted RBP29.86■■■□□ 2.37
LMO4-202ENST00000370544 CENPBP07199 599 aaPredicted RBP29.63■■■□□ 2.33
LMO4-202ENST00000370544 PPARGC1BQ86YN6 1023 aaKnown RBP29.34■■■□□ 2.29
LMO4-202ENST00000370544 ERICH6Q7L0X2 663 aa29.23■■■□□ 2.27
LMO4-202ENST00000370544 TRIM26Q12899 539 aaPredicted RBP29.15■■■□□ 2.26
LMO4-202ENST00000370544 YTHDC1Q96MU7 727 aaKnown RBP29.09■■■□□ 2.25
LMO4-202ENST00000370544 NEFLP07196 543 aa29.05■■■□□ 2.24
LMO4-202ENST00000370544 CHIC1Q5VXU3 224 aa28.97■■■□□ 2.23
LMO4-202ENST00000370544 LOC105371045A0A1W2PR82 267 aa28.93■■■□□ 2.22
LMO4-202ENST00000370544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.92■■■□□ 2.22
LMO4-202ENST00000370544 ITGAEP38570 1179 aa28.92■■■□□ 2.22
LMO4-202ENST00000370544 HNRNPUL2Q1KMD3 747 aaKnown RBP28.92■■■□□ 2.22
LMO4-202ENST00000370544 MYT1LQ9UL68 1186 aa28.78■■■□□ 2.2
LMO4-202ENST00000370544 HRCP23327 699 aa28.69■■■□□ 2.18
LMO4-202ENST00000370544 ABCC9O60706 1549 aa28.67■■■□□ 2.18
LMO4-202ENST00000370544 POLR3GLQ9BT43 218 aa28.6■■■□□ 2.17
LMO4-202ENST00000370544 PABPN1Q86U42 306 aaKnown RBP eCLIP28.54■■■□□ 2.16
LMO4-202ENST00000370544 CNGB1Q14028 1251 aaPredicted RBP28.27■■■□□ 2.12
LMO4-202ENST00000370544 FAM50AQ14320 339 aaKnown RBP28.25■■■□□ 2.11
LMO4-202ENST00000370544 DAXXQ9UER7 740 aaPredicted RBP28.13■■■□□ 2.09
LMO4-202ENST00000370544 SLC4A1APQ9BWU0 796 aaKnown RBP28.07■■■□□ 2.08
LMO4-202ENST00000370544 TRIM52Q96A61 297 aa28.07■■■□□ 2.08
LMO4-202ENST00000370544 DIEXFQ68CQ4 756 aaKnown RBP28.04■■■□□ 2.08
LMO4-202ENST00000370544 MYT1Q01538 1121 aa28.04■■■□□ 2.08
LMO4-202ENST00000370544 NEUROD1Q13562 356 aa27.93■■■□□ 2.06
LMO4-202ENST00000370544 FBLN2P98095 1184 aa27.85■■■□□ 2.05
LMO4-202ENST00000370544 ZNF326Q5BKZ1 582 aaKnown RBP27.7■■■□□ 2.03
LMO4-202ENST00000370544 CSRNP3Q8WYN3 585 aa27.69■■■□□ 2.02
LMO4-202ENST00000370544 P3H3Q8IVL6 736 aa27.64■■■□□ 2.02
LMO4-202ENST00000370544 CLSPNQ9HAW4 1339 aa27.64■■■□□ 2.01
LMO4-202ENST00000370544 SCRIBQ14160 1630 aa27.62■■■□□ 2.01
LMO4-202ENST00000370544 ANP32CO43423 234 aa27.59■■■□□ 2.01
LMO4-202ENST00000370544 ARID3CA6NKF2 412 aa27.55■■■□□ 2
LMO4-202ENST00000370544 ZCCHC6Q5VYS8 1495 aaKnown RBP27.52■■■□□ 2
LMO4-202ENST00000370544 ZNF316A6NFI3 1004 aaPredicted RBP27.52■■■□□ 2
LMO4-202ENST00000370544 RTL5Q5HYW3 569 aaPredicted RBP27.41■■□□□ 1.98
LMO4-202ENST00000370544 BCANQ96GW7 911 aa27.39■■□□□ 1.97
LMO4-202ENST00000370544 ZNF777Q9ULD5 760 aaPredicted RBP27.38■■□□□ 1.97
LMO4-202ENST00000370544 CDK11AQ9UQ88 783 aaPredicted RBP27.34■■□□□ 1.97
LMO4-202ENST00000370544 GTF3C3Q9Y5Q9 886 aa27.31■■□□□ 1.96
LMO4-202ENST00000370544 CCDC180Q9P1Z9 1646 aa27.22■■□□□ 1.95
LMO4-202ENST00000370544 ZBTB47Q9UFB7 747 aaPredicted RBP27.18■■□□□ 1.94
LMO4-202ENST00000370544 CANXP27824 592 aaKnown RBP27.15■■□□□ 1.94
LMO4-202ENST00000370544 NEFMP07197 916 aa27.11■■□□□ 1.93
LMO4-202ENST00000370544 SLC24A1O60721 1099 aa27.06■■□□□ 1.92
LMO4-202ENST00000370544 TONSLQ96HA7 1378 aa27.06■■□□□ 1.92
LMO4-202ENST00000370544 DCAF1Q9Y4B6 1507 aa27.05■■□□□ 1.92
LMO4-202ENST00000370544 ACIN1Q9UKV3 1341 aaKnown RBP26.96■■□□□ 1.91
LMO4-202ENST00000370544 ESF1Q9H501 851 aaKnown RBP26.95■■□□□ 1.9
LMO4-202ENST00000370544 BCL11AQ9H165 835 aa26.92■■□□□ 1.9
LMO4-202ENST00000370544 CHGAP10645 457 aaKnown RBP26.91■■□□□ 1.9
LMO4-202ENST00000370544 NPM1P06748 294 aaKnown RBP eCLIP26.9■■□□□ 1.9
LMO4-202ENST00000370544 CHIC2Q9UKJ5 165 aa26.87■■□□□ 1.89
LMO4-202ENST00000370544 RB1CC1Q8TDY2 1594 aa26.87■■□□□ 1.89
LMO4-202ENST00000370544 STAG3Q9UJ98 1225 aa26.85■■□□□ 1.89
LMO4-202ENST00000370544 MTUS2Q5JR59 1369 aa26.77■■□□□ 1.88
LMO4-202ENST00000370544 DDX10Q13206 875 aaKnown RBP26.77■■□□□ 1.88
LMO4-202ENST00000370544 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.76■■□□□ 1.87
LMO4-202ENST00000370544 CLIP1P30622 1438 aa26.76■■□□□ 1.87
LMO4-202ENST00000370544 CHMP7Q8WUX9 453 aaPredicted RBP26.73■■□□□ 1.87
LMO4-202ENST00000370544 ANP32AP39687 249 aaKnown RBP26.71■■□□□ 1.87
LMO4-202ENST00000370544 HNRNPUQ00839 825 aaKnown RBP eCLIP26.7■■□□□ 1.87
LMO4-202ENST00000370544 TSPY4P0CV99 314 aa26.7■■□□□ 1.86
LMO4-202ENST00000370544 TSPY10P0CW01 314 aa26.7■■□□□ 1.86
LMO4-202ENST00000370544 FAM9BQ8IZU0 186 aa26.68■■□□□ 1.86
LMO4-202ENST00000370544 RSF1Q96T23 1441 aaPredicted RBP26.68■■□□□ 1.86
LMO4-202ENST00000370544 FKBP8Q14318 412 aa26.66■■□□□ 1.86
LMO4-202ENST00000370544 PLPPR3Q6T4P5 718 aa26.66■■□□□ 1.86
LMO4-202ENST00000370544 NPM2Q86SE8 214 aaKnown RBP26.61■■□□□ 1.85
LMO4-202ENST00000370544 EEA1Q15075 1411 aa26.6■■□□□ 1.85
LMO4-202ENST00000370544 GOLGA3Q08378 1498 aa26.6■■□□□ 1.85
LMO4-202ENST00000370544 NACADO15069 1562 aa26.57■■□□□ 1.84
LMO4-202ENST00000370544 KDM2AQ9Y2K7 1162 aa26.57■■□□□ 1.84
LMO4-202ENST00000370544 TMC1Q8TDI8 760 aa26.55■■□□□ 1.84
LMO4-202ENST00000370544 SALL2Q9Y467 1007 aaPredicted RBP26.54■■□□□ 1.84
LMO4-202ENST00000370544 BAZ1BQ9UIG0 1483 aaKnown RBP26.52■■□□□ 1.84
LMO4-202ENST00000370544 CEP162Q5TB80 1403 aa26.52■■□□□ 1.84
LMO4-202ENST00000370544 WRNQ14191 1432 aaPredicted RBP eCLIP26.51■■□□□ 1.84
LMO4-202ENST00000370544 RRP7BPQ9NSQ0 103 aa26.48■■□□□ 1.83
LMO4-202ENST00000370544 MYO15BQ96JP2 1530 aa26.47■■□□□ 1.83
LMO4-202ENST00000370544 WDR43Q15061 677 aaKnown RBP eCLIP26.45■■□□□ 1.83
LMO4-202ENST00000370544 MRS2Q9HD23 443 aa26.44■■□□□ 1.82
LMO4-202ENST00000370544 PLEKHD1A6NEE1 506 aa26.39■■□□□ 1.81
LMO4-202ENST00000370544 KIF27Q86VH2 1401 aa26.38■■□□□ 1.81
LMO4-202ENST00000370544 KCNH8Q96L42 1107 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms