RNA–Protein interactions for RNA: ENST00000624009.3

LINC00963-217, long intergenic non-protein coding RNA 963, humanhuman

TSL 5 BASIC

Gene LINC00963, Length 663 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-217ENST00000624009 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
LINC00963-217ENST00000624009 CCDC180Q9P1Z9 1646 aa27.4■■□□□ 1.98
LINC00963-217ENST00000624009 ABCC9O60706 1549 aa26.74■■□□□ 1.87
LINC00963-217ENST00000624009 RB1CC1Q8TDY2 1594 aa25.81■■□□□ 1.72
LINC00963-217ENST00000624009 NACADO15069 1562 aa25.77■■□□□ 1.72
LINC00963-217ENST00000624009 MYO15BQ96JP2 1530 aa25.66■■□□□ 1.7
LINC00963-217ENST00000624009 ZCCHC6Q5VYS8 1495 aaKnown RBP25.48■■□□□ 1.67
LINC00963-217ENST00000624009 DCAF1Q9Y4B6 1507 aa25.45■■□□□ 1.66
LINC00963-217ENST00000624009 DCAF8L2P0C7V8 631 aa25.42■■□□□ 1.66
LINC00963-217ENST00000624009 UNC13AQ9UPW8 1703 aa25.23■■□□□ 1.63
LINC00963-217ENST00000624009 BICRAQ9NZM4 1560 aa24.99■■□□□ 1.59
LINC00963-217ENST00000624009 PABPN1Q86U42 306 aaKnown RBP eCLIP24.9■■□□□ 1.58
LINC00963-217ENST00000624009 SHROOM4Q9ULL8 1493 aa24.89■■□□□ 1.58
LINC00963-217ENST00000624009 SCRIBQ14160 1630 aa24.8■■□□□ 1.56
LINC00963-217ENST00000624009 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
LINC00963-217ENST00000624009 EIF4G1Q04637 1599 aaKnown RBP24.35■■□□□ 1.49
LINC00963-217ENST00000624009 CC2D2AQ9P2K1 1620 aa24.27■■□□□ 1.48
LINC00963-217ENST00000624009 CECR2Q9BXF3 1484 aa24.12■■□□□ 1.45
LINC00963-217ENST00000624009 SMARCA4P51532 1647 aa23.8■■□□□ 1.4
LINC00963-217ENST00000624009 BAZ1AQ9NRL2 1556 aaPredicted RBP23.78■■□□□ 1.4
LINC00963-217ENST00000624009 NCAPD3P42695 1498 aa23.75■■□□□ 1.39
LINC00963-217ENST00000624009 SMARCA2P51531 1590 aa23.72■■□□□ 1.39
LINC00963-217ENST00000624009 ATAD2BQ9ULI0 1458 aa23.69■■□□□ 1.38
LINC00963-217ENST00000624009 PEG3Q9GZU2 1588 aa23.65■■□□□ 1.38
LINC00963-217ENST00000624009 HMGXB3Q12766 1538 aa23.65■■□□□ 1.38
LINC00963-217ENST00000624009 MROH2BQ7Z745 1585 aa23.53■■□□□ 1.36
LINC00963-217ENST00000624009 BAZ1BQ9UIG0 1483 aaKnown RBP23.48■■□□□ 1.35
LINC00963-217ENST00000624009 WIZO95785 1651 aa23.26■■□□□ 1.31
LINC00963-217ENST00000624009 RSF1Q96T23 1441 aaPredicted RBP23.23■■□□□ 1.31
LINC00963-217ENST00000624009 LAMC3Q9Y6N6 1575 aa23.17■■□□□ 1.3
LINC00963-217ENST00000624009 ERCC6Q03468 1493 aa23.11■■□□□ 1.29
LINC00963-217ENST00000624009 NESP48681 1621 aa23.09■■□□□ 1.29
LINC00963-217ENST00000624009 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.28
LINC00963-217ENST00000624009 CUX2O14529 1486 aa23.04■■□□□ 1.28
LINC00963-217ENST00000624009 CADPSQ9ULU8 1353 aa23.01■■□□□ 1.27
LINC00963-217ENST00000624009 PDS5BQ9NTI5 1447 aa22.99■■□□□ 1.27
LINC00963-217ENST00000624009 KIF21AQ7Z4S6 1674 aa22.9■■□□□ 1.26
LINC00963-217ENST00000624009 THOC2Q8NI27 1593 aaKnown RBP22.89■■□□□ 1.25
LINC00963-217ENST00000624009 CFTRP13569 1480 aa22.86■■□□□ 1.25
LINC00963-217ENST00000624009 PRDM2Q13029 1718 aa22.77■■□□□ 1.24
LINC00963-217ENST00000624009 CCDC88BA6NC98 1476 aa22.75■■□□□ 1.23
LINC00963-217ENST00000624009 MRC2Q9UBG0 1479 aa22.73■■□□□ 1.23
LINC00963-217ENST00000624009 FANCD2Q9BXW9 1451 aa22.73■■□□□ 1.23
LINC00963-217ENST00000624009 CEP164Q9UPV0 1460 aa22.73■■□□□ 1.23
LINC00963-217ENST00000624009 WDR62O43379 1518 aa22.7■■□□□ 1.22
LINC00963-217ENST00000624009 URB2Q14146 1524 aaKnown RBP22.49■■□□□ 1.19
LINC00963-217ENST00000624009 ABCC8Q09428 1581 aa22.44■■□□□ 1.18
LINC00963-217ENST00000624009 DNAJC5Q9H3Z4 198 aa22.44■■□□□ 1.18
LINC00963-217ENST00000624009 TOPBP1Q92547 1522 aa22.36■■□□□ 1.17
LINC00963-217ENST00000624009 SUPT5HO00267 1087 aaKnown RBP22.35■■□□□ 1.17
LINC00963-217ENST00000624009 DNMBPQ6XZF7 1577 aa22.34■■□□□ 1.17
LINC00963-217ENST00000624009 IFT140Q96RY7 1462 aa22.29■■□□□ 1.16
LINC00963-217ENST00000624009 TARBP1Q13395 1621 aaKnown RBP22.15■■□□□ 1.14
LINC00963-217ENST00000624009 POLA1P09884 1462 aaPredicted RBP22.15■■□□□ 1.14
LINC00963-217ENST00000624009 ZNF608Q9ULD9 1512 aaPredicted RBP22.11■■□□□ 1.13
LINC00963-217ENST00000624009 CUX1P39880 1505 aa22.1■■□□□ 1.13
LINC00963-217ENST00000624009 WDR97A6NE52 1622 aa22.09■■□□□ 1.13
LINC00963-217ENST00000624009 EIF4G3O43432 1585 aaKnown RBP22.08■■□□□ 1.12
LINC00963-217ENST00000624009 FGD5Q6ZNL6 1462 aa22.04■■□□□ 1.12
LINC00963-217ENST00000624009 SOGA1O94964 1423 aa22.03■■□□□ 1.12
LINC00963-217ENST00000624009 RAD54L2Q9Y4B4 1467 aa21.98■■□□□ 1.11
LINC00963-217ENST00000624009 OSCARQ8IYS5 282 aa21.97■■□□□ 1.11
LINC00963-217ENST00000624009 AQRO60306 1485 aaKnown RBP eCLIP21.96■■□□□ 1.11
LINC00963-217ENST00000624009 BIVM-ERCC5R4GMW8 1640 aa21.95■■□□□ 1.1
LINC00963-217ENST00000624009 TOP2BQ02880 1626 aa21.93■■□□□ 1.1
LINC00963-217ENST00000624009 WRNQ14191 1432 aaPredicted RBP eCLIP21.91■■□□□ 1.1
LINC00963-217ENST00000624009 ABCA10Q8WWZ4 1543 aa21.9■■□□□ 1.1
LINC00963-217ENST00000624009 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
LINC00963-217ENST00000624009 SYNJ1O43426 1573 aa21.84■■□□□ 1.09
LINC00963-217ENST00000624009 GRIN2BQ13224 1484 aa21.83■■□□□ 1.09
LINC00963-217ENST00000624009 MAGI1Q96QZ7 1491 aaPredicted RBP21.83■■□□□ 1.09
LINC00963-217ENST00000624009 CHD1O14646 1710 aa21.83■■□□□ 1.09
LINC00963-217ENST00000624009 ABCA5Q8WWZ7 1642 aa21.82■■□□□ 1.08
LINC00963-217ENST00000624009 GAPVD1Q14C86 1478 aa21.8■■□□□ 1.08
LINC00963-217ENST00000624009 PBRM1Q86U86 1689 aa21.79■■□□□ 1.08
LINC00963-217ENST00000624009 SNAPC4Q5SXM2 1469 aa21.77■■□□□ 1.07
LINC00963-217ENST00000624009 SYNJ2O15056 1496 aa21.72■■□□□ 1.07
LINC00963-217ENST00000624009 FBLN2P98095 1184 aa21.66■■□□□ 1.06
LINC00963-217ENST00000624009 ERICH3Q5RHP9 1530 aa21.65■■□□□ 1.06
LINC00963-217ENST00000624009 CHMP7Q8WUX9 453 aaPredicted RBP21.65■■□□□ 1.06
LINC00963-217ENST00000624009 RIMBP3CA6NJZ7 1639 aa21.64■■□□□ 1.05
LINC00963-217ENST00000624009 RIMBP3BA6NNM3 1639 aa21.64■■□□□ 1.05
LINC00963-217ENST00000624009 RIMBP3Q9UFD9 1639 aa21.64■■□□□ 1.05
LINC00963-217ENST00000624009 ARHGEF11O15085 1522 aa21.62■■□□□ 1.05
LINC00963-217ENST00000624009 CLASP1Q7Z460 1538 aa21.61■■□□□ 1.05
LINC00963-217ENST00000624009 ADAMTS12P58397 1594 aa21.6■■□□□ 1.05
LINC00963-217ENST00000624009 FHAD1B1AJZ9 1412 aa21.56■■□□□ 1.04
LINC00963-217ENST00000624009 GRIN2AQ12879 1464 aa21.55■■□□□ 1.04
LINC00963-217ENST00000624009 KIF27Q86VH2 1401 aa21.49■■□□□ 1.03
LINC00963-217ENST00000624009 NUP160Q12769 1436 aa21.48■■□□□ 1.03
LINC00963-217ENST00000624009 TRIM41Q8WV44 630 aa21.47■■□□□ 1.03
LINC00963-217ENST00000624009 CUL7Q14999 1698 aa21.43■■□□□ 1.02
LINC00963-217ENST00000624009 CEP170Q5SW79 1584 aa21.42■■□□□ 1.02
LINC00963-217ENST00000624009 ARAP1Q96P48 1450 aa21.41■■□□□ 1.02
LINC00963-217ENST00000624009 IGF1RP08069 1367 aa21.39■■□□□ 1.02
LINC00963-217ENST00000624009 SHROOM2Q13796 1616 aa21.37■■□□□ 1.01
LINC00963-217ENST00000624009 CYB5RLQ6IPT4 315 aa21.34■■□□□ 1.01
LINC00963-217ENST00000624009 RUSC2Q8N2Y8 1516 aa21.29■■□□□ 1
LINC00963-217ENST00000624009 CARMIL1Q5VZK9 1371 aa21.26■□□□□ 0.99
LINC00963-217ENST00000624009 KIAA0586Q9BVV6 1533 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms