RNA–Protein interactions for RNA: ENST00000339754.10

NECAP1-201, Transcript of NECAP endocytosis associated 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NECAP1, Length 2,593 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-201ENST00000339754 NISCHQ9Y2I1 1504 aa18.19■□□□□ 0.5
NECAP1-201ENST00000339754 AEBP2Q6ZN18 517 aaPredicted RBP17.69■□□□□ 0.42
NECAP1-201ENST00000339754 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
NECAP1-201ENST00000339754 HRCP23327 699 aa16.01■□□□□ 0.15
NECAP1-201ENST00000339754 CCDC180Q9P1Z9 1646 aa15.64■□□□□ 0.1
NECAP1-201ENST00000339754 PPARGC1BQ86YN6 1023 aaKnown RBP15.63■□□□□ 0.09
NECAP1-201ENST00000339754 PCGF6Q9BYE7 350 aa15.59■□□□□ 0.09
NECAP1-201ENST00000339754 SHROOM4Q9ULL8 1493 aa15.58■□□□□ 0.08
NECAP1-201ENST00000339754 SUPT5HO00267 1087 aaKnown RBP15.57■□□□□ 0.08
NECAP1-201ENST00000339754 MYO15BQ96JP2 1530 aa15.56■□□□□ 0.08
NECAP1-201ENST00000339754 PELP1Q8IZL8 1130 aaKnown RBP15.53■□□□□ 0.08
NECAP1-201ENST00000339754 ZCCHC6Q5VYS8 1495 aaKnown RBP15.31■□□□□ 0.04
NECAP1-201ENST00000339754 DCAF1Q9Y4B6 1507 aa15.27■□□□□ 0.04
NECAP1-201ENST00000339754 DCAF8L2P0C7V8 631 aa15.19■□□□□ 0.02
NECAP1-201ENST00000339754 SCAF1Q9H7N4 1312 aaKnown RBP15.18■□□□□ 0.02
NECAP1-201ENST00000339754 TRIM26Q12899 539 aaPredicted RBP15.12■□□□□ 0.01
NECAP1-201ENST00000339754 SENP3Q9H4L4 574 aaPredicted RBP15.09■□□□□ 0.01
NECAP1-201ENST00000339754 LOC105371045A0A1W2PR82 267 aa15.06■□□□□ 0
NECAP1-201ENST00000339754 ZEB1P37275 1124 aaPredicted RBP15.02□□□□□ -0.01
NECAP1-201ENST00000339754 MYT1Q01538 1121 aa14.94□□□□□ -0.02
NECAP1-201ENST00000339754 PHF23Q9BUL5 403 aaPredicted RBP14.89□□□□□ -0.03
NECAP1-201ENST00000339754 ABCC9O60706 1549 aa14.79□□□□□ -0.04
NECAP1-201ENST00000339754 ACIN1Q9UKV3 1341 aaKnown RBP14.78□□□□□ -0.04
NECAP1-201ENST00000339754 NEUROD1Q13562 356 aa14.73□□□□□ -0.05
NECAP1-201ENST00000339754 GTF3C3Q9Y5Q9 886 aa14.64□□□□□ -0.07
NECAP1-201ENST00000339754 SCRIBQ14160 1630 aa14.59□□□□□ -0.07
NECAP1-201ENST00000339754 NACADO15069 1562 aa14.55□□□□□ -0.08
NECAP1-201ENST00000339754 CENPBP07199 599 aaPredicted RBP14.53□□□□□ -0.08
NECAP1-201ENST00000339754 DIEXFQ68CQ4 756 aaKnown RBP14.46□□□□□ -0.09
NECAP1-201ENST00000339754 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.42□□□□□ -0.1
NECAP1-201ENST00000339754 TRIM41Q8WV44 630 aa14.42□□□□□ -0.1
NECAP1-201ENST00000339754 RB1CC1Q8TDY2 1594 aa14.39□□□□□ -0.11
NECAP1-201ENST00000339754 CCER1Q8TC90 406 aaPredicted RBP14.38□□□□□ -0.11
NECAP1-201ENST00000339754 FAM9AQ8IZU1 332 aaPredicted RBP14.38□□□□□ -0.11
NECAP1-201ENST00000339754 EHMT2Q96KQ7 1210 aa14.27□□□□□ -0.13
NECAP1-201ENST00000339754 RSF1Q96T23 1441 aaPredicted RBP14.26□□□□□ -0.13
NECAP1-201ENST00000339754 CECR2Q9BXF3 1484 aa14.21□□□□□ -0.14
NECAP1-201ENST00000339754 ZNF316A6NFI3 1004 aaPredicted RBP14.2□□□□□ -0.14
NECAP1-201ENST00000339754 YTHDC1Q96MU7 727 aaKnown RBP14.17□□□□□ -0.14
NECAP1-201ENST00000339754 UNC13AQ9UPW8 1703 aa14.15□□□□□ -0.14
NECAP1-201ENST00000339754 MROH2BQ7Z745 1585 aa14.12□□□□□ -0.15
NECAP1-201ENST00000339754 MIER1Q8N108 512 aa14.11□□□□□ -0.15
NECAP1-201ENST00000339754 FOXD1Q16676 465 aa14.1□□□□□ -0.15
NECAP1-201ENST00000339754 PABPN1Q86U42 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
NECAP1-201ENST00000339754 TTBK1Q5TCY1 1321 aaPredicted RBP14.04□□□□□ -0.16
NECAP1-201ENST00000339754 WIZO95785 1651 aa14.03□□□□□ -0.16
NECAP1-201ENST00000339754 WRNQ14191 1432 aaPredicted RBP eCLIP14.03□□□□□ -0.16
NECAP1-201ENST00000339754 BAZ1AQ9NRL2 1556 aaPredicted RBP14□□□□□ -0.17
NECAP1-201ENST00000339754 BICRAQ9NZM4 1560 aa14□□□□□ -0.17
NECAP1-201ENST00000339754 ANP32EQ9BTT0 268 aa13.96□□□□□ -0.17
NECAP1-201ENST00000339754 BCL11AQ9H165 835 aa13.96□□□□□ -0.17
NECAP1-201ENST00000339754 SUPT16HQ9Y5B9 1047 aaKnown RBP13.93□□□□□ -0.18
NECAP1-201ENST00000339754 SMARCA4P51532 1647 aa13.93□□□□□ -0.18
NECAP1-201ENST00000339754 CLSPNQ9HAW4 1339 aa13.92□□□□□ -0.18
NECAP1-201ENST00000339754 TSHZ2Q9NRE2 1034 aa13.91□□□□□ -0.18
NECAP1-201ENST00000339754 CEP162Q5TB80 1403 aa13.87□□□□□ -0.19
NECAP1-201ENST00000339754 TOP2AP11388 1531 aaKnown RBP13.81□□□□□ -0.2
NECAP1-201ENST00000339754 EIF4G1Q04637 1599 aaKnown RBP13.81□□□□□ -0.2
NECAP1-201ENST00000339754 TNIKQ9UKE5 1360 aa13.81□□□□□ -0.2
NECAP1-201ENST00000339754 CSRNP3Q8WYN3 585 aa13.8□□□□□ -0.2
NECAP1-201ENST00000339754 POTEDQ86YR6 584 aa13.78□□□□□ -0.2
NECAP1-201ENST00000339754 CCDC88BA6NC98 1476 aa13.74□□□□□ -0.21
NECAP1-201ENST00000339754 HNRNPUL2Q1KMD3 747 aaKnown RBP13.74□□□□□ -0.21
NECAP1-201ENST00000339754 SMARCA2P51531 1590 aa13.72□□□□□ -0.21
NECAP1-201ENST00000339754 ABCC8Q09428 1581 aa13.69□□□□□ -0.22
NECAP1-201ENST00000339754 SOGA1O94964 1423 aa13.69□□□□□ -0.22
NECAP1-201ENST00000339754 PEG3Q9GZU2 1588 aa13.68□□□□□ -0.22
NECAP1-201ENST00000339754 ATAD2BQ9ULI0 1458 aa13.66□□□□□ -0.22
NECAP1-201ENST00000339754 UBTFP17480 764 aaKnown RBP13.65□□□□□ -0.22
NECAP1-201ENST00000339754 EEA1Q15075 1411 aa13.62□□□□□ -0.23
NECAP1-201ENST00000339754 RUSC2Q8N2Y8 1516 aa13.61□□□□□ -0.23
NECAP1-201ENST00000339754 BAZ1BQ9UIG0 1483 aaKnown RBP13.61□□□□□ -0.23
NECAP1-201ENST00000339754 GOLGA3Q08378 1498 aa13.58□□□□□ -0.24
NECAP1-201ENST00000339754 RBM19Q9Y4C8 960 aaKnown RBP13.56□□□□□ -0.24
NECAP1-201ENST00000339754 DHX57Q6P158 1386 aaKnown RBP13.55□□□□□ -0.24
NECAP1-201ENST00000339754 BCANQ96GW7 911 aa13.55□□□□□ -0.24
NECAP1-201ENST00000339754 KCNH8Q96L42 1107 aa13.54□□□□□ -0.24
NECAP1-201ENST00000339754 FKBP8Q14318 412 aa13.52□□□□□ -0.24
NECAP1-201ENST00000339754 CLIP1P30622 1438 aa13.5□□□□□ -0.25
NECAP1-201ENST00000339754 VPS8Q8N3P4 1428 aa13.49□□□□□ -0.25
NECAP1-201ENST00000339754 MSH5O43196 834 aa13.47□□□□□ -0.25
NECAP1-201ENST00000339754 NCAPD3P42695 1498 aa13.47□□□□□ -0.25
NECAP1-201ENST00000339754 CEP164Q9UPV0 1460 aa13.44□□□□□ -0.26
NECAP1-201ENST00000339754 APLP2Q06481 763 aa13.43□□□□□ -0.26
NECAP1-201ENST00000339754 HMGXB3Q12766 1538 aa13.43□□□□□ -0.26
NECAP1-201ENST00000339754 KIF21BO75037 1637 aa13.42□□□□□ -0.26
NECAP1-201ENST00000339754 PRKCSHP14314 528 aaPredicted RBP13.4□□□□□ -0.26
NECAP1-201ENST00000339754 ITGAEP38570 1179 aa13.37□□□□□ -0.27
NECAP1-201ENST00000339754 NEFLP07196 543 aa13.36□□□□□ -0.27
NECAP1-201ENST00000339754 FANCIQ9NVI1 1328 aa13.36□□□□□ -0.27
NECAP1-201ENST00000339754 SYNJ1O43426 1573 aa13.34□□□□□ -0.27
NECAP1-201ENST00000339754 CUX2O14529 1486 aa13.32□□□□□ -0.28
NECAP1-201ENST00000339754 CC2D2AQ9P2K1 1620 aa13.32□□□□□ -0.28
NECAP1-201ENST00000339754 RAPGEF2Q9Y4G8 1499 aa13.3□□□□□ -0.28
NECAP1-201ENST00000339754 DDX10Q13206 875 aaKnown RBP13.3□□□□□ -0.28
NECAP1-201ENST00000339754 RRBP1Q9P2E9 1410 aaKnown RBP13.29□□□□□ -0.28
NECAP1-201ENST00000339754 PPP1R15AO75807 674 aaPredicted RBP13.28□□□□□ -0.28
NECAP1-201ENST00000339754 KANK4Q5T7N3 995 aaPredicted RBP13.28□□□□□ -0.28
NECAP1-201ENST00000339754 TRIM52Q96A61 297 aa13.27□□□□□ -0.29
NECAP1-201ENST00000339754 CCER2I3L3R5 266 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms