RNA–Protein interactions for RNA: ENST00000625171.3

LINC00963-220, long intergenic non-protein coding RNA 963, humanhuman

TSL 5

Gene LINC00963, Length 830 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-220ENST00000625171 NISCHQ9Y2I1 1504 aa27.14■■□□□ 1.94
LINC00963-220ENST00000625171 CCDC180Q9P1Z9 1646 aa23.77■■□□□ 1.4
LINC00963-220ENST00000625171 ABCC9O60706 1549 aa23.68■■□□□ 1.38
LINC00963-220ENST00000625171 ZCCHC6Q5VYS8 1495 aaKnown RBP22.76■■□□□ 1.23
LINC00963-220ENST00000625171 DCAF1Q9Y4B6 1507 aa22.6■■□□□ 1.21
LINC00963-220ENST00000625171 DNAJC5BQ9UF47 199 aa22.49■■□□□ 1.19
LINC00963-220ENST00000625171 RB1CC1Q8TDY2 1594 aa22.46■■□□□ 1.19
LINC00963-220ENST00000625171 MYO15BQ96JP2 1530 aa22.46■■□□□ 1.19
LINC00963-220ENST00000625171 NACADO15069 1562 aa22.25■■□□□ 1.15
LINC00963-220ENST00000625171 DCAF8L2P0C7V8 631 aa22.21■■□□□ 1.15
LINC00963-220ENST00000625171 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
LINC00963-220ENST00000625171 UNC13AQ9UPW8 1703 aa21.84■■□□□ 1.09
LINC00963-220ENST00000625171 BICRAQ9NZM4 1560 aa21.78■■□□□ 1.08
LINC00963-220ENST00000625171 SHROOM4Q9ULL8 1493 aa21.69■■□□□ 1.06
LINC00963-220ENST00000625171 SCRIBQ14160 1630 aa21.6■■□□□ 1.05
LINC00963-220ENST00000625171 CECR2Q9BXF3 1484 aa21.42■■□□□ 1.02
LINC00963-220ENST00000625171 CC2D2AQ9P2K1 1620 aa21.4■■□□□ 1.02
LINC00963-220ENST00000625171 EIF4G1Q04637 1599 aaKnown RBP21.29■■□□□ 1
LINC00963-220ENST00000625171 DNAJC5Q9H3Z4 198 aa21■□□□□ 0.95
LINC00963-220ENST00000625171 BAZ1AQ9NRL2 1556 aaPredicted RBP20.97■□□□□ 0.95
LINC00963-220ENST00000625171 RSF1Q96T23 1441 aaPredicted RBP20.97■□□□□ 0.95
LINC00963-220ENST00000625171 MROH2BQ7Z745 1585 aa20.87■□□□□ 0.93
LINC00963-220ENST00000625171 SUPT5HO00267 1087 aaKnown RBP20.86■□□□□ 0.93
LINC00963-220ENST00000625171 SMARCA4P51532 1647 aa20.83■□□□□ 0.93
LINC00963-220ENST00000625171 PEG3Q9GZU2 1588 aa20.74■□□□□ 0.91
LINC00963-220ENST00000625171 CUX2O14529 1486 aa20.66■□□□□ 0.9
LINC00963-220ENST00000625171 WIZO95785 1651 aa20.62■□□□□ 0.89
LINC00963-220ENST00000625171 SMARCA2P51531 1590 aa20.6■□□□□ 0.89
LINC00963-220ENST00000625171 ATAD2BQ9ULI0 1458 aa20.6■□□□□ 0.89
LINC00963-220ENST00000625171 NCAPD3P42695 1498 aa20.55■□□□□ 0.88
LINC00963-220ENST00000625171 TOP2AP11388 1531 aaKnown RBP20.53■□□□□ 0.88
LINC00963-220ENST00000625171 ERCC6Q03468 1493 aa20.51■□□□□ 0.87
LINC00963-220ENST00000625171 HMGXB3Q12766 1538 aa20.45■□□□□ 0.86
LINC00963-220ENST00000625171 BAZ1BQ9UIG0 1483 aaKnown RBP20.41■□□□□ 0.86
LINC00963-220ENST00000625171 CCDC88BA6NC98 1476 aa20.3■□□□□ 0.84
LINC00963-220ENST00000625171 NESP48681 1621 aa20.22■□□□□ 0.83
LINC00963-220ENST00000625171 THOC2Q8NI27 1593 aaKnown RBP20.15■□□□□ 0.82
LINC00963-220ENST00000625171 LAMC3Q9Y6N6 1575 aa20.12■□□□□ 0.81
LINC00963-220ENST00000625171 CHIC1Q5VXU3 224 aa20.04■□□□□ 0.8
LINC00963-220ENST00000625171 PDS5BQ9NTI5 1447 aa20.03■□□□□ 0.8
LINC00963-220ENST00000625171 CFTRP13569 1480 aa19.99■□□□□ 0.79
LINC00963-220ENST00000625171 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.79
LINC00963-220ENST00000625171 KIF21AQ7Z4S6 1674 aa19.95■□□□□ 0.78
LINC00963-220ENST00000625171 MRC2Q9UBG0 1479 aa19.86■□□□□ 0.77
LINC00963-220ENST00000625171 WDR62O43379 1518 aa19.83■□□□□ 0.77
LINC00963-220ENST00000625171 TRIM41Q8WV44 630 aa19.83■□□□□ 0.77
LINC00963-220ENST00000625171 PRDM2Q13029 1718 aa19.76■□□□□ 0.75
LINC00963-220ENST00000625171 WRNQ14191 1432 aaPredicted RBP eCLIP19.72■□□□□ 0.75
LINC00963-220ENST00000625171 CEP164Q9UPV0 1460 aa19.71■□□□□ 0.75
LINC00963-220ENST00000625171 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
LINC00963-220ENST00000625171 FANCD2Q9BXW9 1451 aa19.65■□□□□ 0.74
LINC00963-220ENST00000625171 OSCARQ8IYS5 282 aa19.6■□□□□ 0.73
LINC00963-220ENST00000625171 TOP2BQ02880 1626 aa19.59■□□□□ 0.73
LINC00963-220ENST00000625171 BIVM-ERCC5R4GMW8 1640 aa19.56■□□□□ 0.72
LINC00963-220ENST00000625171 SYNJ1O43426 1573 aa19.55■□□□□ 0.72
LINC00963-220ENST00000625171 CUX1P39880 1505 aa19.53■□□□□ 0.72
LINC00963-220ENST00000625171 URB2Q14146 1524 aaKnown RBP19.47■□□□□ 0.71
LINC00963-220ENST00000625171 EEA1Q15075 1411 aa19.47■□□□□ 0.71
LINC00963-220ENST00000625171 DNMBPQ6XZF7 1577 aa19.45■□□□□ 0.7
LINC00963-220ENST00000625171 TOPBP1Q92547 1522 aa19.42■□□□□ 0.7
LINC00963-220ENST00000625171 RIMBP3CA6NJZ7 1639 aa19.36■□□□□ 0.69
LINC00963-220ENST00000625171 RIMBP3BA6NNM3 1639 aa19.36■□□□□ 0.69
LINC00963-220ENST00000625171 RIMBP3Q9UFD9 1639 aa19.36■□□□□ 0.69
LINC00963-220ENST00000625171 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
LINC00963-220ENST00000625171 FGD5Q6ZNL6 1462 aa19.34■□□□□ 0.69
LINC00963-220ENST00000625171 SOGA1O94964 1423 aa19.34■□□□□ 0.69
LINC00963-220ENST00000625171 POLA1P09884 1462 aaPredicted RBP19.3■□□□□ 0.68
LINC00963-220ENST00000625171 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
LINC00963-220ENST00000625171 ARHGEF11O15085 1522 aa19.29■□□□□ 0.68
LINC00963-220ENST00000625171 ZNF608Q9ULD9 1512 aaPredicted RBP19.28■□□□□ 0.68
LINC00963-220ENST00000625171 KIF27Q86VH2 1401 aa19.26■□□□□ 0.67
LINC00963-220ENST00000625171 ABCA10Q8WWZ4 1543 aa19.26■□□□□ 0.67
LINC00963-220ENST00000625171 RUSC2Q8N2Y8 1516 aa19.24■□□□□ 0.67
LINC00963-220ENST00000625171 FAM9AQ8IZU1 332 aaPredicted RBP19.19■□□□□ 0.66
LINC00963-220ENST00000625171 EIF4G3O43432 1585 aaKnown RBP19.18■□□□□ 0.66
LINC00963-220ENST00000625171 RAD54L2Q9Y4B4 1467 aa19.16■□□□□ 0.66
LINC00963-220ENST00000625171 IGF1RP08069 1367 aa19.15■□□□□ 0.66
LINC00963-220ENST00000625171 TARBP1Q13395 1621 aaKnown RBP19.14■□□□□ 0.66
LINC00963-220ENST00000625171 LOC105371045A0A1W2PR82 267 aa19.13■□□□□ 0.65
LINC00963-220ENST00000625171 PRXQ9BXM0 1461 aa19.13■□□□□ 0.65
LINC00963-220ENST00000625171 WDR97A6NE52 1622 aa19.12■□□□□ 0.65
LINC00963-220ENST00000625171 CYB5RLQ6IPT4 315 aa19.12■□□□□ 0.65
LINC00963-220ENST00000625171 KIF21BO75037 1637 aa19.11■□□□□ 0.65
LINC00963-220ENST00000625171 ERICH3Q5RHP9 1530 aa19.07■□□□□ 0.64
LINC00963-220ENST00000625171 ARAP1Q96P48 1450 aa19.07■□□□□ 0.64
LINC00963-220ENST00000625171 GOLGA3Q08378 1498 aa19.06■□□□□ 0.64
LINC00963-220ENST00000625171 ABCA5Q8WWZ7 1642 aa19.05■□□□□ 0.64
LINC00963-220ENST00000625171 CHD1O14646 1710 aa19.05■□□□□ 0.64
LINC00963-220ENST00000625171 AQRO60306 1485 aaKnown RBP eCLIP19.04■□□□□ 0.64
LINC00963-220ENST00000625171 TNIKQ9UKE5 1360 aa19.04■□□□□ 0.64
LINC00963-220ENST00000625171 GAPVD1Q14C86 1478 aa19.03■□□□□ 0.64
LINC00963-220ENST00000625171 TDRD9Q8NDG6 1382 aaKnown RBP19.03■□□□□ 0.64
LINC00963-220ENST00000625171 TRHP20396 242 aaPredicted RBP19.01■□□□□ 0.63
LINC00963-220ENST00000625171 CARMIL1Q5VZK9 1371 aa19■□□□□ 0.63
LINC00963-220ENST00000625171 FBLN2P98095 1184 aa18.97■□□□□ 0.63
LINC00963-220ENST00000625171 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
LINC00963-220ENST00000625171 CUL7Q14999 1698 aa18.95■□□□□ 0.62
LINC00963-220ENST00000625171 GRIN2BQ13224 1484 aa18.95■□□□□ 0.62
LINC00963-220ENST00000625171 UBTFP17480 764 aaKnown RBP18.9■□□□□ 0.62
LINC00963-220ENST00000625171 CLASP1Q7Z460 1538 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms