RNA–Protein interactions for RNA: ENST00000640648.1

NECAP1-227, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 5,166 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-227ENST00000640648 MYT1Q01538 1121 aa14.58□□□□□ -0.08
NECAP1-227ENST00000640648 PELP1Q8IZL8 1130 aaKnown RBP14.43□□□□□ -0.1
NECAP1-227ENST00000640648 DCAF8L2P0C7V8 631 aa13.67□□□□□ -0.22
NECAP1-227ENST00000640648 TTBK1Q5TCY1 1321 aaPredicted RBP13.65□□□□□ -0.22
NECAP1-227ENST00000640648 NISCHQ9Y2I1 1504 aa13.57□□□□□ -0.24
NECAP1-227ENST00000640648 SUPT5HO00267 1087 aaKnown RBP13.4□□□□□ -0.26
NECAP1-227ENST00000640648 SHROOM4Q9ULL8 1493 aa13.22□□□□□ -0.29
NECAP1-227ENST00000640648 ZEB1P37275 1124 aaPredicted RBP13.05□□□□□ -0.32
NECAP1-227ENST00000640648 CENPBP07199 599 aaPredicted RBP13.02□□□□□ -0.32
NECAP1-227ENST00000640648 ERICH6Q7L0X2 663 aa13.01□□□□□ -0.33
NECAP1-227ENST00000640648 EHMT2Q96KQ7 1210 aa12.91□□□□□ -0.34
NECAP1-227ENST00000640648 CCER1Q8TC90 406 aaPredicted RBP12.82□□□□□ -0.36
NECAP1-227ENST00000640648 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
NECAP1-227ENST00000640648 HRCP23327 699 aa12.73□□□□□ -0.37
NECAP1-227ENST00000640648 FAM9AQ8IZU1 332 aaPredicted RBP12.61□□□□□ -0.39
NECAP1-227ENST00000640648 YTHDC1Q96MU7 727 aaKnown RBP12.59□□□□□ -0.39
NECAP1-227ENST00000640648 MYT1LQ9UL68 1186 aa12.41□□□□□ -0.42
NECAP1-227ENST00000640648 CLSPNQ9HAW4 1339 aa12.35□□□□□ -0.43
NECAP1-227ENST00000640648 TRIM41Q8WV44 630 aa12.31□□□□□ -0.44
NECAP1-227ENST00000640648 APLP2Q06481 763 aa12.29□□□□□ -0.44
NECAP1-227ENST00000640648 NEFLP07196 543 aa12.23□□□□□ -0.45
NECAP1-227ENST00000640648 PPARGC1BQ86YN6 1023 aaKnown RBP12.22□□□□□ -0.45
NECAP1-227ENST00000640648 RANGAP1P46060 587 aaPredicted RBP12.2□□□□□ -0.46
NECAP1-227ENST00000640648 TRIM26Q12899 539 aaPredicted RBP12.19□□□□□ -0.46
NECAP1-227ENST00000640648 LOC105371045A0A1W2PR82 267 aa12.18□□□□□ -0.46
NECAP1-227ENST00000640648 CHIC1Q5VXU3 224 aa12.16□□□□□ -0.46
NECAP1-227ENST00000640648 GLIPR1L2Q4G1C9 344 aa12.13□□□□□ -0.47
NECAP1-227ENST00000640648 ACIN1Q9UKV3 1341 aaKnown RBP12.08□□□□□ -0.48
NECAP1-227ENST00000640648 UBTFP17480 764 aaKnown RBP12.06□□□□□ -0.48
NECAP1-227ENST00000640648 RTL5Q5HYW3 569 aaPredicted RBP12.01□□□□□ -0.49
NECAP1-227ENST00000640648 GTF3C3Q9Y5Q9 886 aa11.97□□□□□ -0.49
NECAP1-227ENST00000640648 ATP1B4Q9UN42 357 aaPredicted RBP11.9□□□□□ -0.5
NECAP1-227ENST00000640648 ANP32EQ9BTT0 268 aa11.87□□□□□ -0.51
NECAP1-227ENST00000640648 BCL11AQ9H165 835 aa11.86□□□□□ -0.51
NECAP1-227ENST00000640648 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
NECAP1-227ENST00000640648 DIEXFQ68CQ4 756 aaKnown RBP11.85□□□□□ -0.51
NECAP1-227ENST00000640648 HNRNPUL2Q1KMD3 747 aaKnown RBP11.8□□□□□ -0.52
NECAP1-227ENST00000640648 SCAF1Q9H7N4 1312 aaKnown RBP11.8□□□□□ -0.52
NECAP1-227ENST00000640648 SLC24A1O60721 1099 aa11.77□□□□□ -0.53
NECAP1-227ENST00000640648 DAXXQ9UER7 740 aaPredicted RBP11.75□□□□□ -0.53
NECAP1-227ENST00000640648 ITGAEP38570 1179 aa11.75□□□□□ -0.53
NECAP1-227ENST00000640648 CDK11AQ9UQ88 783 aaPredicted RBP11.68□□□□□ -0.54
NECAP1-227ENST00000640648 DCAF1Q9Y4B6 1507 aa11.68□□□□□ -0.54
NECAP1-227ENST00000640648 ERICH6BQ5W0A0 696 aa11.67□□□□□ -0.54
NECAP1-227ENST00000640648 EIF5BO60841 1220 aaKnown RBP11.59□□□□□ -0.55
NECAP1-227ENST00000640648 ZNF316A6NFI3 1004 aaPredicted RBP11.56□□□□□ -0.56
NECAP1-227ENST00000640648 CNGB1Q14028 1251 aaPredicted RBP11.53□□□□□ -0.56
NECAP1-227ENST00000640648 NEUROD1Q13562 356 aa11.52□□□□□ -0.56
NECAP1-227ENST00000640648 ANP32AP39687 249 aaKnown RBP11.51□□□□□ -0.57
NECAP1-227ENST00000640648 NCLP19338 710 aaKnown RBP11.5□□□□□ -0.57
NECAP1-227ENST00000640648 POLR3GLQ9BT43 218 aa11.5□□□□□ -0.57
NECAP1-227ENST00000640648 BCANQ96GW7 911 aa11.47□□□□□ -0.57
NECAP1-227ENST00000640648 PRKCSHP14314 528 aaPredicted RBP11.44□□□□□ -0.58
NECAP1-227ENST00000640648 CCDC180Q9P1Z9 1646 aa11.42□□□□□ -0.58
NECAP1-227ENST00000640648 MYO15BQ96JP2 1530 aa11.4□□□□□ -0.58
NECAP1-227ENST00000640648 FAM50AQ14320 339 aaKnown RBP11.39□□□□□ -0.59
NECAP1-227ENST00000640648 ABCC9O60706 1549 aa11.38□□□□□ -0.59
NECAP1-227ENST00000640648 PABPN1Q86U42 306 aaKnown RBP eCLIP11.38□□□□□ -0.59
NECAP1-227ENST00000640648 TNNT2P45379 298 aaPredicted RBP11.37□□□□□ -0.59
NECAP1-227ENST00000640648 CSRNP3Q8WYN3 585 aa11.3□□□□□ -0.6
NECAP1-227ENST00000640648 ZCCHC6Q5VYS8 1495 aaKnown RBP11.3□□□□□ -0.6
NECAP1-227ENST00000640648 TRIM44Q96DX7 344 aaPredicted RBP11.29□□□□□ -0.6
NECAP1-227ENST00000640648 ZNF326Q5BKZ1 582 aaKnown RBP11.28□□□□□ -0.6
NECAP1-227ENST00000640648 ZBTB47Q9UFB7 747 aaPredicted RBP11.28□□□□□ -0.6
NECAP1-227ENST00000640648 PPM1GO15355 546 aaPredicted RBP11.28□□□□□ -0.6
NECAP1-227ENST00000640648 ANP32BQ92688 251 aaKnown RBP11.25□□□□□ -0.61
NECAP1-227ENST00000640648 TRIM52Q96A61 297 aa11.24□□□□□ -0.61
NECAP1-227ENST00000640648 ANP32CO43423 234 aa11.24□□□□□ -0.61
NECAP1-227ENST00000640648 RSPH6AQ9H0K4 717 aa11.23□□□□□ -0.61
NECAP1-227ENST00000640648 DDRGK1Q96HY6 314 aa11.21□□□□□ -0.61
NECAP1-227ENST00000640648 DEKP35659 375 aaKnown RBP11.2□□□□□ -0.62
NECAP1-227ENST00000640648 P3H3Q8IVL6 736 aa11.19□□□□□ -0.62
NECAP1-227ENST00000640648 FKBP8Q14318 412 aa11.18□□□□□ -0.62
NECAP1-227ENST00000640648 SCRIBQ14160 1630 aa11.16□□□□□ -0.62
NECAP1-227ENST00000640648 MIER1Q8N108 512 aa11.16□□□□□ -0.62
NECAP1-227ENST00000640648 ARID4BQ4LE39 1312 aaPredicted RBP11.14□□□□□ -0.63
NECAP1-227ENST00000640648 USP35Q9P2H5 1018 aa11.12□□□□□ -0.63
NECAP1-227ENST00000640648 NOP58Q9Y2X3 529 aaKnown RBP11.11□□□□□ -0.63
NECAP1-227ENST00000640648 DDX10Q13206 875 aaKnown RBP11.11□□□□□ -0.63
NECAP1-227ENST00000640648 SUPT16HQ9Y5B9 1047 aaKnown RBP11.11□□□□□ -0.63
NECAP1-227ENST00000640648 NEFMP07197 916 aa11.1□□□□□ -0.63
NECAP1-227ENST00000640648 PKNOX2Q96KN3 472 aa11.1□□□□□ -0.63
NECAP1-227ENST00000640648 UBE2Q2Q8WVN8 375 aa11.09□□□□□ -0.63
NECAP1-227ENST00000640648 ARID3CA6NKF2 412 aa11.09□□□□□ -0.63
NECAP1-227ENST00000640648 CDK11BP21127 795 aaKnown RBP11.08□□□□□ -0.64
NECAP1-227ENST00000640648 SLC4A1APQ9BWU0 796 aaKnown RBP11.08□□□□□ -0.64
NECAP1-227ENST00000640648 L1TD1Q5T7N2 865 aaKnown RBP11.07□□□□□ -0.64
NECAP1-227ENST00000640648 HSP90AA1P07900 732 aaKnown RBP11.06□□□□□ -0.64
NECAP1-227ENST00000640648 PODXL2Q9NZ53 605 aa11.06□□□□□ -0.64
NECAP1-227ENST00000640648 FANCIQ9NVI1 1328 aa11.06□□□□□ -0.64
NECAP1-227ENST00000640648 NBR1Q14596 966 aa11.05□□□□□ -0.64
NECAP1-227ENST00000640648 TSHZ2Q9NRE2 1034 aa11.05□□□□□ -0.64
NECAP1-227ENST00000640648 RBM19Q9Y4C8 960 aaKnown RBP11.04□□□□□ -0.64
NECAP1-227ENST00000640648 PTMSP20962 102 aa11.03□□□□□ -0.64
NECAP1-227ENST00000640648 HNRNPUQ00839 825 aaKnown RBP eCLIP11.03□□□□□ -0.64
NECAP1-227ENST00000640648 HIRIP3Q9BW71 556 aaPredicted RBP11.03□□□□□ -0.64
NECAP1-227ENST00000640648 RSF1Q96T23 1441 aaPredicted RBP11.01□□□□□ -0.65
NECAP1-227ENST00000640648 TONSLQ96HA7 1378 aa10.98□□□□□ -0.65
NECAP1-227ENST00000640648 NPM2Q86SE8 214 aaKnown RBP10.98□□□□□ -0.65
NECAP1-227ENST00000640648 NAP1L5Q96NT1 182 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms