RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 PELP1Q8IZL8 1130 aaKnown RBP29.56■■■□□ 2.32
SMAD4-201ENST00000342988 DCAF8L2P0C7V8 631 aa28.23■■■□□ 2.11
SMAD4-201ENST00000342988 CCER1Q8TC90 406 aaPredicted RBP28.12■■■□□ 2.09
SMAD4-201ENST00000342988 ERICH6Q7L0X2 663 aa28.09■■■□□ 2.09
SMAD4-201ENST00000342988 MYT1Q01538 1121 aa27.84■■■□□ 2.05
SMAD4-201ENST00000342988 YTHDC1Q96MU7 727 aaKnown RBP27.33■■□□□ 1.97
SMAD4-201ENST00000342988 FAM9AQ8IZU1 332 aaPredicted RBP27.31■■□□□ 1.96
SMAD4-201ENST00000342988 APLP2Q06481 763 aa27.24■■□□□ 1.95
SMAD4-201ENST00000342988 CENPBP07199 599 aaPredicted RBP27.13■■□□□ 1.93
SMAD4-201ENST00000342988 NEFLP07196 543 aa26.86■■□□□ 1.89
SMAD4-201ENST00000342988 DAXXQ9UER7 740 aaPredicted RBP26.77■■□□□ 1.88
SMAD4-201ENST00000342988 SUPT5HO00267 1087 aaKnown RBP26.7■■□□□ 1.86
SMAD4-201ENST00000342988 TTBK1Q5TCY1 1321 aaPredicted RBP26.51■■□□□ 1.83
SMAD4-201ENST00000342988 ZEB1P37275 1124 aaPredicted RBP26.42■■□□□ 1.82
SMAD4-201ENST00000342988 EHMT2Q96KQ7 1210 aa26.41■■□□□ 1.82
SMAD4-201ENST00000342988 PCGF6Q9BYE7 350 aa26.02■■□□□ 1.76
SMAD4-201ENST00000342988 ZNF316A6NFI3 1004 aaPredicted RBP25.96■■□□□ 1.75
SMAD4-201ENST00000342988 RTL5Q5HYW3 569 aaPredicted RBP25.93■■□□□ 1.74
SMAD4-201ENST00000342988 ATP1B4Q9UN42 357 aaPredicted RBP25.65■■□□□ 1.7
SMAD4-201ENST00000342988 SHROOM4Q9ULL8 1493 aa25.65■■□□□ 1.7
SMAD4-201ENST00000342988 CLSPNQ9HAW4 1339 aa25.53■■□□□ 1.68
SMAD4-201ENST00000342988 RANGAP1P46060 587 aaPredicted RBP25.3■■□□□ 1.64
SMAD4-201ENST00000342988 GLIPR1L2Q4G1C9 344 aa25.22■■□□□ 1.63
SMAD4-201ENST00000342988 ZBTB47Q9UFB7 747 aaPredicted RBP25.18■■□□□ 1.62
SMAD4-201ENST00000342988 POLR3GLQ9BT43 218 aa25.13■■□□□ 1.61
SMAD4-201ENST00000342988 MYT1LQ9UL68 1186 aa25.1■■□□□ 1.61
SMAD4-201ENST00000342988 UBTFP17480 764 aaKnown RBP25.1■■□□□ 1.61
SMAD4-201ENST00000342988 SLC4A1APQ9BWU0 796 aaKnown RBP25.06■■□□□ 1.6
SMAD4-201ENST00000342988 ANP32BQ92688 251 aaKnown RBP25.01■■□□□ 1.59
SMAD4-201ENST00000342988 TRIM41Q8WV44 630 aa24.93■■□□□ 1.58
SMAD4-201ENST00000342988 NISCHQ9Y2I1 1504 aa24.72■■□□□ 1.55
SMAD4-201ENST00000342988 CDK11AQ9UQ88 783 aaPredicted RBP24.71■■□□□ 1.55
SMAD4-201ENST00000342988 NEFMP07197 916 aa24.7■■□□□ 1.54
SMAD4-201ENST00000342988 EIF5BO60841 1220 aaKnown RBP24.63■■□□□ 1.53
SMAD4-201ENST00000342988 CNGB1Q14028 1251 aaPredicted RBP24.58■■□□□ 1.52
SMAD4-201ENST00000342988 TRIM26Q12899 539 aaPredicted RBP24.57■■□□□ 1.52
SMAD4-201ENST00000342988 CHIC1Q5VXU3 224 aa24.57■■□□□ 1.52
SMAD4-201ENST00000342988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.56■■□□□ 1.52
SMAD4-201ENST00000342988 HNRNPUL2Q1KMD3 747 aaKnown RBP24.56■■□□□ 1.52
SMAD4-201ENST00000342988 ANP32AP39687 249 aaKnown RBP24.56■■□□□ 1.52
SMAD4-201ENST00000342988 CDK11BP21127 795 aaKnown RBP24.56■■□□□ 1.52
SMAD4-201ENST00000342988 CANXP27824 592 aaKnown RBP24.54■■□□□ 1.52
SMAD4-201ENST00000342988 SLC24A1O60721 1099 aa24.46■■□□□ 1.51
SMAD4-201ENST00000342988 HSP90AA1P07900 732 aaKnown RBP24.45■■□□□ 1.5
SMAD4-201ENST00000342988 HRCP23327 699 aa24.43■■□□□ 1.5
SMAD4-201ENST00000342988 ITGAEP38570 1179 aa24.39■■□□□ 1.5
SMAD4-201ENST00000342988 TNNT2P45379 298 aaPredicted RBP24.33■■□□□ 1.49
SMAD4-201ENST00000342988 UPF2Q9HAU5 1272 aaKnown RBP24.3■■□□□ 1.48
SMAD4-201ENST00000342988 DIEXFQ68CQ4 756 aaKnown RBP24.25■■□□□ 1.47
SMAD4-201ENST00000342988 BCL11AQ9H165 835 aa24.2■■□□□ 1.46
SMAD4-201ENST00000342988 ANP32CO43423 234 aa24.17■■□□□ 1.46
SMAD4-201ENST00000342988 PPARGC1BQ86YN6 1023 aaKnown RBP24.1■■□□□ 1.45
SMAD4-201ENST00000342988 BCANQ96GW7 911 aa23.98■■□□□ 1.43
SMAD4-201ENST00000342988 NPM2Q86SE8 214 aaKnown RBP23.92■■□□□ 1.42
SMAD4-201ENST00000342988 TRIM44Q96DX7 344 aaPredicted RBP23.9■■□□□ 1.42
SMAD4-201ENST00000342988 TRIM52Q96A61 297 aa23.85■■□□□ 1.41
SMAD4-201ENST00000342988 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
SMAD4-201ENST00000342988 ANP32EQ9BTT0 268 aa23.82■■□□□ 1.4
SMAD4-201ENST00000342988 FAM50AQ14320 339 aaKnown RBP23.78■■□□□ 1.4
SMAD4-201ENST00000342988 NCLP19338 710 aaKnown RBP23.71■■□□□ 1.39
SMAD4-201ENST00000342988 ZRSR1Q15695 479 aaKnown RBP23.7■■□□□ 1.38
SMAD4-201ENST00000342988 ZNF326Q5BKZ1 582 aaKnown RBP23.67■■□□□ 1.38
SMAD4-201ENST00000342988 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.65■■□□□ 1.38
SMAD4-201ENST00000342988 NEUROD1Q13562 356 aa23.65■■□□□ 1.38
SMAD4-201ENST00000342988 GOLGA6L22H0YM25 854 aa23.6■■□□□ 1.37
SMAD4-201ENST00000342988 MYH16Q9H6N6 1097 aa23.59■■□□□ 1.37
SMAD4-201ENST00000342988 ARXQ96QS3 562 aa23.57■■□□□ 1.36
SMAD4-201ENST00000342988 BECN1Q14457 450 aa23.54■■□□□ 1.36
SMAD4-201ENST00000342988 DNTTIP2Q5QJE6 756 aaKnown RBP23.54■■□□□ 1.36
SMAD4-201ENST00000342988 GOLGA6L6A8MZA4 724 aa23.54■■□□□ 1.36
SMAD4-201ENST00000342988 NBR1Q14596 966 aa23.52■■□□□ 1.36
SMAD4-201ENST00000342988 PTMAP06454 111 aaKnown RBP23.48■■□□□ 1.35
SMAD4-201ENST00000342988 DDRGK1Q96HY6 314 aa23.44■■□□□ 1.34
SMAD4-201ENST00000342988 NRDCO43847 1150 aa23.42■■□□□ 1.34
SMAD4-201ENST00000342988 L1TD1Q5T7N2 865 aaKnown RBP23.41■■□□□ 1.34
SMAD4-201ENST00000342988 ESF1Q9H501 851 aaKnown RBP23.37■■□□□ 1.33
SMAD4-201ENST00000342988 ERICH6BQ5W0A0 696 aa23.36■■□□□ 1.33
SMAD4-201ENST00000342988 CHAF1AQ13111 956 aaPredicted RBP23.34■■□□□ 1.33
SMAD4-201ENST00000342988 CASC1Q6TDU7 716 aa23.33■■□□□ 1.33
SMAD4-201ENST00000342988 CCDC136Q96JN2 1154 aa23.3■■□□□ 1.32
SMAD4-201ENST00000342988 FKBP8Q14318 412 aa23.22■■□□□ 1.31
SMAD4-201ENST00000342988 NAP1L5Q96NT1 182 aaPredicted RBP23.21■■□□□ 1.31
SMAD4-201ENST00000342988 TULP1O00294 542 aaPredicted RBP23.21■■□□□ 1.31
SMAD4-201ENST00000342988 ACIN1Q9UKV3 1341 aaKnown RBP23.19■■□□□ 1.3
SMAD4-201ENST00000342988 STAG3Q9UJ98 1225 aa23.19■■□□□ 1.3
SMAD4-201ENST00000342988 WDR43Q15061 677 aaKnown RBP eCLIP23.13■■□□□ 1.29
SMAD4-201ENST00000342988 KIAA2012Q0VF49 1180 aa23.12■■□□□ 1.29
SMAD4-201ENST00000342988 HNRNPUQ00839 825 aaKnown RBP eCLIP23.07■■□□□ 1.28
SMAD4-201ENST00000342988 USP35Q9P2H5 1018 aa23.06■■□□□ 1.28
SMAD4-201ENST00000342988 NOC3LQ8WTT2 800 aaKnown RBP23.05■■□□□ 1.28
SMAD4-201ENST00000342988 CALRP27797 417 aaKnown RBP23.05■■□□□ 1.28
SMAD4-201ENST00000342988 TMC1Q8TDI8 760 aa23.05■■□□□ 1.28
SMAD4-201ENST00000342988 NCBP3Q53F19 620 aaKnown RBP23.02■■□□□ 1.28
SMAD4-201ENST00000342988 TNNT3P45378 269 aaPredicted RBP23■■□□□ 1.27
SMAD4-201ENST00000342988 TONSLQ96HA7 1378 aa22.99■■□□□ 1.27
SMAD4-201ENST00000342988 A0A0G2JS52 829 aa22.98■■□□□ 1.27
SMAD4-201ENST00000342988 LOC105371045A0A1W2PR82 267 aa22.97■■□□□ 1.27
SMAD4-201ENST00000342988 MSNP26038 577 aaKnown RBP22.97■■□□□ 1.27
SMAD4-201ENST00000342988 CLSTN1O94985 981 aa22.96■■□□□ 1.27
SMAD4-201ENST00000342988 SCAF1Q9H7N4 1312 aaKnown RBP22.95■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms