RNA–Protein interactions for RNA: ENST00000640099.1

NECAP1-224, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 3,313 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-224ENST00000640099 NISCHQ9Y2I1 1504 aa15.82■□□□□ 0.12
NECAP1-224ENST00000640099 SHROOM4Q9ULL8 1493 aa13.82□□□□□ -0.2
NECAP1-224ENST00000640099 DCAF8L2P0C7V8 631 aa13.58□□□□□ -0.24
NECAP1-224ENST00000640099 SUPT5HO00267 1087 aaKnown RBP13.52□□□□□ -0.24
NECAP1-224ENST00000640099 ZCCHC6Q5VYS8 1495 aaKnown RBP13.34□□□□□ -0.27
NECAP1-224ENST00000640099 CCDC180Q9P1Z9 1646 aa13.3□□□□□ -0.28
NECAP1-224ENST00000640099 CHIC1Q5VXU3 224 aa12.96□□□□□ -0.33
NECAP1-224ENST00000640099 MYO15BQ96JP2 1530 aa12.88□□□□□ -0.35
NECAP1-224ENST00000640099 DCAF1Q9Y4B6 1507 aa12.81□□□□□ -0.36
NECAP1-224ENST00000640099 AEBP2Q6ZN18 517 aaPredicted RBP12.75□□□□□ -0.37
NECAP1-224ENST00000640099 ABCC9O60706 1549 aa12.74□□□□□ -0.37
NECAP1-224ENST00000640099 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
NECAP1-224ENST00000640099 LOC105371045A0A1W2PR82 267 aa12.72□□□□□ -0.37
NECAP1-224ENST00000640099 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
NECAP1-224ENST00000640099 EHMT2Q96KQ7 1210 aa12.6□□□□□ -0.39
NECAP1-224ENST00000640099 RSF1Q96T23 1441 aaPredicted RBP12.57□□□□□ -0.4
NECAP1-224ENST00000640099 FAM9AQ8IZU1 332 aaPredicted RBP12.56□□□□□ -0.4
NECAP1-224ENST00000640099 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
NECAP1-224ENST00000640099 CECR2Q9BXF3 1484 aa12.48□□□□□ -0.41
NECAP1-224ENST00000640099 HRCP23327 699 aa12.44□□□□□ -0.42
NECAP1-224ENST00000640099 RB1CC1Q8TDY2 1594 aa12.44□□□□□ -0.42
NECAP1-224ENST00000640099 NACADO15069 1562 aa12.4□□□□□ -0.42
NECAP1-224ENST00000640099 PPARGC1BQ86YN6 1023 aaKnown RBP12.39□□□□□ -0.43
NECAP1-224ENST00000640099 MROH2BQ7Z745 1585 aa12.38□□□□□ -0.43
NECAP1-224ENST00000640099 WIZO95785 1651 aa12.3□□□□□ -0.44
NECAP1-224ENST00000640099 PABPN1Q86U42 306 aaKnown RBP eCLIP12.29□□□□□ -0.44
NECAP1-224ENST00000640099 TRIM26Q12899 539 aaPredicted RBP12.25□□□□□ -0.45
NECAP1-224ENST00000640099 TTBK1Q5TCY1 1321 aaPredicted RBP12.14□□□□□ -0.47
NECAP1-224ENST00000640099 BAZ1AQ9NRL2 1556 aaPredicted RBP12.13□□□□□ -0.47
NECAP1-224ENST00000640099 ABCC8Q09428 1581 aa12.08□□□□□ -0.48
NECAP1-224ENST00000640099 CCDC88BA6NC98 1476 aa12.06□□□□□ -0.48
NECAP1-224ENST00000640099 SMARCA4P51532 1647 aa12.05□□□□□ -0.48
NECAP1-224ENST00000640099 UNC13AQ9UPW8 1703 aa12.03□□□□□ -0.48
NECAP1-224ENST00000640099 TOP2AP11388 1531 aaKnown RBP12.01□□□□□ -0.49
NECAP1-224ENST00000640099 SMARCA2P51531 1590 aa11.98□□□□□ -0.49
NECAP1-224ENST00000640099 SOGA1O94964 1423 aa11.97□□□□□ -0.49
NECAP1-224ENST00000640099 UBTFP17480 764 aaKnown RBP11.96□□□□□ -0.49
NECAP1-224ENST00000640099 EIF4G1Q04637 1599 aaKnown RBP11.95□□□□□ -0.5
NECAP1-224ENST00000640099 BICRAQ9NZM4 1560 aa11.94□□□□□ -0.5
NECAP1-224ENST00000640099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.93□□□□□ -0.5
NECAP1-224ENST00000640099 RUSC2Q8N2Y8 1516 aa11.93□□□□□ -0.5
NECAP1-224ENST00000640099 RANGAP1P46060 587 aaPredicted RBP11.93□□□□□ -0.5
NECAP1-224ENST00000640099 CSRNP3Q8WYN3 585 aa11.89□□□□□ -0.51
NECAP1-224ENST00000640099 ZEB1P37275 1124 aaPredicted RBP11.87□□□□□ -0.51
NECAP1-224ENST00000640099 CCER1Q8TC90 406 aaPredicted RBP11.86□□□□□ -0.51
NECAP1-224ENST00000640099 CEP162Q5TB80 1403 aa11.84□□□□□ -0.51
NECAP1-224ENST00000640099 WRNQ14191 1432 aaPredicted RBP eCLIP11.83□□□□□ -0.52
NECAP1-224ENST00000640099 ATAD2BQ9ULI0 1458 aa11.81□□□□□ -0.52
NECAP1-224ENST00000640099 BAZ1BQ9UIG0 1483 aaKnown RBP11.8□□□□□ -0.52
NECAP1-224ENST00000640099 TNIKQ9UKE5 1360 aa11.77□□□□□ -0.53
NECAP1-224ENST00000640099 SYNJ1O43426 1573 aa11.74□□□□□ -0.53
NECAP1-224ENST00000640099 GOLGA3Q08378 1498 aa11.71□□□□□ -0.53
NECAP1-224ENST00000640099 HNRNPUL2Q1KMD3 747 aaKnown RBP11.71□□□□□ -0.53
NECAP1-224ENST00000640099 EEA1Q15075 1411 aa11.7□□□□□ -0.54
NECAP1-224ENST00000640099 PEG3Q9GZU2 1588 aa11.7□□□□□ -0.54
NECAP1-224ENST00000640099 RAPGEF2Q9Y4G8 1499 aa11.65□□□□□ -0.54
NECAP1-224ENST00000640099 CLIP1P30622 1438 aa11.64□□□□□ -0.55
NECAP1-224ENST00000640099 APLP2Q06481 763 aa11.64□□□□□ -0.55
NECAP1-224ENST00000640099 CEP164Q9UPV0 1460 aa11.64□□□□□ -0.55
NECAP1-224ENST00000640099 DIEXFQ68CQ4 756 aaKnown RBP11.54□□□□□ -0.56
NECAP1-224ENST00000640099 KIF21BO75037 1637 aa11.53□□□□□ -0.56
NECAP1-224ENST00000640099 VPS8Q8N3P4 1428 aa11.53□□□□□ -0.56
NECAP1-224ENST00000640099 NCAPD3P42695 1498 aa11.53□□□□□ -0.56
NECAP1-224ENST00000640099 TOP2BQ02880 1626 aa11.52□□□□□ -0.57
NECAP1-224ENST00000640099 CUX1P39880 1505 aa11.5□□□□□ -0.57
NECAP1-224ENST00000640099 KANK4Q5T7N3 995 aaPredicted RBP11.5□□□□□ -0.57
NECAP1-224ENST00000640099 SCAF1Q9H7N4 1312 aaKnown RBP11.49□□□□□ -0.57
NECAP1-224ENST00000640099 ITGAEP38570 1179 aa11.49□□□□□ -0.57
NECAP1-224ENST00000640099 HMGXB3Q12766 1538 aa11.46□□□□□ -0.58
NECAP1-224ENST00000640099 KIF27Q86VH2 1401 aa11.45□□□□□ -0.58
NECAP1-224ENST00000640099 P3H3Q8IVL6 736 aa11.45□□□□□ -0.58
NECAP1-224ENST00000640099 ATP1B4Q9UN42 357 aaPredicted RBP11.44□□□□□ -0.58
NECAP1-224ENST00000640099 CFTRP13569 1480 aa11.44□□□□□ -0.58
NECAP1-224ENST00000640099 PRXQ9BXM0 1461 aa11.44□□□□□ -0.58
NECAP1-224ENST00000640099 YTHDC1Q96MU7 727 aaKnown RBP11.43□□□□□ -0.58
NECAP1-224ENST00000640099 BIVM-ERCC5R4GMW8 1640 aa11.43□□□□□ -0.58
NECAP1-224ENST00000640099 ZNF316A6NFI3 1004 aaPredicted RBP11.42□□□□□ -0.58
NECAP1-224ENST00000640099 NEUROD1Q13562 356 aa11.42□□□□□ -0.58
NECAP1-224ENST00000640099 CUX2O14529 1486 aa11.42□□□□□ -0.58
NECAP1-224ENST00000640099 ARAP1Q96P48 1450 aa11.41□□□□□ -0.58
NECAP1-224ENST00000640099 CADPSQ9ULU8 1353 aa11.39□□□□□ -0.59
NECAP1-224ENST00000640099 IGF1RP08069 1367 aa11.36□□□□□ -0.59
NECAP1-224ENST00000640099 ACIN1Q9UKV3 1341 aaKnown RBP11.36□□□□□ -0.59
NECAP1-224ENST00000640099 ERICH3Q5RHP9 1530 aa11.35□□□□□ -0.59
NECAP1-224ENST00000640099 FGD5Q6ZNL6 1462 aa11.34□□□□□ -0.59
NECAP1-224ENST00000640099 CARMIL1Q5VZK9 1371 aa11.34□□□□□ -0.59
NECAP1-224ENST00000640099 ARHGAP35Q9NRY4 1499 aa11.33□□□□□ -0.6
NECAP1-224ENST00000640099 DNAJC5BQ9UF47 199 aa11.33□□□□□ -0.6
NECAP1-224ENST00000640099 CC2D2AQ9P2K1 1620 aa11.33□□□□□ -0.6
NECAP1-224ENST00000640099 MIER1Q8N108 512 aa11.33□□□□□ -0.6
NECAP1-224ENST00000640099 NESP48681 1621 aa11.32□□□□□ -0.6
NECAP1-224ENST00000640099 RAD54L2Q9Y4B4 1467 aa11.31□□□□□ -0.6
NECAP1-224ENST00000640099 GTF3C3Q9Y5Q9 886 aa11.3□□□□□ -0.6
NECAP1-224ENST00000640099 CENPBP07199 599 aaPredicted RBP11.3□□□□□ -0.6
NECAP1-224ENST00000640099 FANCD2Q9BXW9 1451 aa11.29□□□□□ -0.6
NECAP1-224ENST00000640099 FAM50AQ14320 339 aaKnown RBP11.29□□□□□ -0.6
NECAP1-224ENST00000640099 DHX57Q6P158 1386 aaKnown RBP11.28□□□□□ -0.6
NECAP1-224ENST00000640099 CCNB3Q8WWL7 1395 aa11.26□□□□□ -0.61
NECAP1-224ENST00000640099 FHOD3Q2V2M9 1422 aa11.23□□□□□ -0.61
NECAP1-224ENST00000640099 TDRD9Q8NDG6 1382 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms