RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 NISCHQ9Y2I1 1504 aa9.36□□□□□ -0.91
SMAD4-202ENST00000398417 DCAF8L2P0C7V8 631 aa8.64□□□□□ -1.03
SMAD4-202ENST00000398417 SHROOM4Q9ULL8 1493 aa8.63□□□□□ -1.03
SMAD4-202ENST00000398417 SUPT5HO00267 1087 aaKnown RBP8.58□□□□□ -1.04
SMAD4-202ENST00000398417 EHMT2Q96KQ7 1210 aa8.11□□□□□ -1.11
SMAD4-202ENST00000398417 CHIC1Q5VXU3 224 aa8.11□□□□□ -1.11
SMAD4-202ENST00000398417 PCGF6Q9BYE7 350 aa8.06□□□□□ -1.12
SMAD4-202ENST00000398417 FAM9AQ8IZU1 332 aaPredicted RBP8.03□□□□□ -1.12
SMAD4-202ENST00000398417 LOC105371045A0A1W2PR82 267 aa7.99□□□□□ -1.13
SMAD4-202ENST00000398417 HRCP23327 699 aa7.93□□□□□ -1.14
SMAD4-202ENST00000398417 PPARGC1BQ86YN6 1023 aaKnown RBP7.92□□□□□ -1.14
SMAD4-202ENST00000398417 TRIM41Q8WV44 630 aa7.89□□□□□ -1.15
SMAD4-202ENST00000398417 ZCCHC6Q5VYS8 1495 aaKnown RBP7.88□□□□□ -1.15
SMAD4-202ENST00000398417 TTBK1Q5TCY1 1321 aaPredicted RBP7.82□□□□□ -1.16
SMAD4-202ENST00000398417 MYO15BQ96JP2 1530 aa7.81□□□□□ -1.16
SMAD4-202ENST00000398417 TRIM26Q12899 539 aaPredicted RBP7.77□□□□□ -1.17
SMAD4-202ENST00000398417 ABCC9O60706 1549 aa7.67□□□□□ -1.18
SMAD4-202ENST00000398417 RANGAP1P46060 587 aaPredicted RBP7.66□□□□□ -1.18
SMAD4-202ENST00000398417 ZEB1P37275 1124 aaPredicted RBP7.65□□□□□ -1.19
SMAD4-202ENST00000398417 CCER1Q8TC90 406 aaPredicted RBP7.62□□□□□ -1.19
SMAD4-202ENST00000398417 MYT1Q01538 1121 aa7.6□□□□□ -1.19
SMAD4-202ENST00000398417 UBTFP17480 764 aaKnown RBP7.6□□□□□ -1.19
SMAD4-202ENST00000398417 PABPN1Q86U42 306 aaKnown RBP eCLIP7.6□□□□□ -1.19
SMAD4-202ENST00000398417 RSF1Q96T23 1441 aaPredicted RBP7.6□□□□□ -1.19
SMAD4-202ENST00000398417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.59□□□□□ -1.19
SMAD4-202ENST00000398417 CCDC180Q9P1Z9 1646 aa7.59□□□□□ -1.19
SMAD4-202ENST00000398417 DCAF1Q9Y4B6 1507 aa7.55□□□□□ -1.2
SMAD4-202ENST00000398417 APLP2Q06481 763 aa7.51□□□□□ -1.21
SMAD4-202ENST00000398417 HNRNPUL2Q1KMD3 747 aaKnown RBP7.5□□□□□ -1.21
SMAD4-202ENST00000398417 SCRIBQ14160 1630 aa7.49□□□□□ -1.21
SMAD4-202ENST00000398417 CECR2Q9BXF3 1484 aa7.48□□□□□ -1.21
SMAD4-202ENST00000398417 PELP1Q8IZL8 1130 aaKnown RBP7.47□□□□□ -1.21
SMAD4-202ENST00000398417 YTHDC1Q96MU7 727 aaKnown RBP7.47□□□□□ -1.21
SMAD4-202ENST00000398417 CSRNP3Q8WYN3 585 aa7.45□□□□□ -1.22
SMAD4-202ENST00000398417 MYT1LQ9UL68 1186 aa7.4□□□□□ -1.22
SMAD4-202ENST00000398417 CENPBP07199 599 aaPredicted RBP7.39□□□□□ -1.23
SMAD4-202ENST00000398417 DIEXFQ68CQ4 756 aaKnown RBP7.38□□□□□ -1.23
SMAD4-202ENST00000398417 ITGAEP38570 1179 aa7.37□□□□□ -1.23
SMAD4-202ENST00000398417 ATP1B4Q9UN42 357 aaPredicted RBP7.37□□□□□ -1.23
SMAD4-202ENST00000398417 MROH2BQ7Z745 1585 aa7.35□□□□□ -1.23
SMAD4-202ENST00000398417 SCAF1Q9H7N4 1312 aaKnown RBP7.34□□□□□ -1.23
SMAD4-202ENST00000398417 ACIN1Q9UKV3 1341 aaKnown RBP7.32□□□□□ -1.24
SMAD4-202ENST00000398417 SOGA1O94964 1423 aa7.32□□□□□ -1.24
SMAD4-202ENST00000398417 GTF3C3Q9Y5Q9 886 aa7.31□□□□□ -1.24
SMAD4-202ENST00000398417 ZNF316A6NFI3 1004 aaPredicted RBP7.31□□□□□ -1.24
SMAD4-202ENST00000398417 NEUROD1Q13562 356 aa7.31□□□□□ -1.24
SMAD4-202ENST00000398417 RB1CC1Q8TDY2 1594 aa7.29□□□□□ -1.24
SMAD4-202ENST00000398417 CEP162Q5TB80 1403 aa7.28□□□□□ -1.24
SMAD4-202ENST00000398417 TNIKQ9UKE5 1360 aa7.26□□□□□ -1.25
SMAD4-202ENST00000398417 CCDC88BA6NC98 1476 aa7.25□□□□□ -1.25
SMAD4-202ENST00000398417 P3H3Q8IVL6 736 aa7.24□□□□□ -1.25
SMAD4-202ENST00000398417 WRNQ14191 1432 aaPredicted RBP eCLIP7.21□□□□□ -1.25
SMAD4-202ENST00000398417 MIER1Q8N108 512 aa7.21□□□□□ -1.25
SMAD4-202ENST00000398417 NACADO15069 1562 aa7.21□□□□□ -1.25
SMAD4-202ENST00000398417 RUSC2Q8N2Y8 1516 aa7.21□□□□□ -1.26
SMAD4-202ENST00000398417 FAM50AQ14320 339 aaKnown RBP7.2□□□□□ -1.26
SMAD4-202ENST00000398417 CLIP1P30622 1438 aa7.18□□□□□ -1.26
SMAD4-202ENST00000398417 GOLGA3Q08378 1498 aa7.18□□□□□ -1.26
SMAD4-202ENST00000398417 ABCC8Q09428 1581 aa7.17□□□□□ -1.26
SMAD4-202ENST00000398417 BAZ1AQ9NRL2 1556 aaPredicted RBP7.15□□□□□ -1.26
SMAD4-202ENST00000398417 EEA1Q15075 1411 aa7.15□□□□□ -1.26
SMAD4-202ENST00000398417 KANK4Q5T7N3 995 aaPredicted RBP7.15□□□□□ -1.26
SMAD4-202ENST00000398417 BCANQ96GW7 911 aa7.12□□□□□ -1.27
SMAD4-202ENST00000398417 ARID3CA6NKF2 412 aa7.1□□□□□ -1.27
SMAD4-202ENST00000398417 WIZO95785 1651 aa7.1□□□□□ -1.27
SMAD4-202ENST00000398417 CEP164Q9UPV0 1460 aa7.1□□□□□ -1.27
SMAD4-202ENST00000398417 TOP2AP11388 1531 aaKnown RBP7.09□□□□□ -1.27
SMAD4-202ENST00000398417 HIRIP3Q9BW71 556 aaPredicted RBP7.08□□□□□ -1.28
SMAD4-202ENST00000398417 BAZ1BQ9UIG0 1483 aaKnown RBP7.08□□□□□ -1.28
SMAD4-202ENST00000398417 SIN3AQ96ST3 1273 aa7.07□□□□□ -1.28
SMAD4-202ENST00000398417 TRIM52Q96A61 297 aa7.06□□□□□ -1.28
SMAD4-202ENST00000398417 CNGB1Q14028 1251 aaPredicted RBP7.06□□□□□ -1.28
SMAD4-202ENST00000398417 DDX10Q13206 875 aaKnown RBP7.05□□□□□ -1.28
SMAD4-202ENST00000398417 ATAD2BQ9ULI0 1458 aa7.05□□□□□ -1.28
SMAD4-202ENST00000398417 VPS8Q8N3P4 1428 aa7.05□□□□□ -1.28
SMAD4-202ENST00000398417 RAPGEF2Q9Y4G8 1499 aa7.03□□□□□ -1.28
SMAD4-202ENST00000398417 POLR3GLQ9BT43 218 aa7.02□□□□□ -1.29
SMAD4-202ENST00000398417 NEFLP07196 543 aa7.02□□□□□ -1.29
SMAD4-202ENST00000398417 CHIC2Q9UKJ5 165 aa7.01□□□□□ -1.29
SMAD4-202ENST00000398417 SMARCA2P51531 1590 aa7.01□□□□□ -1.29
SMAD4-202ENST00000398417 DHX57Q6P158 1386 aaKnown RBP7□□□□□ -1.29
SMAD4-202ENST00000398417 KIF27Q86VH2 1401 aa7□□□□□ -1.29
SMAD4-202ENST00000398417 ANP32CO43423 234 aa6.98□□□□□ -1.29
SMAD4-202ENST00000398417 FKBP8Q14318 412 aa6.98□□□□□ -1.29
SMAD4-202ENST00000398417 CARMIL1Q5VZK9 1371 aa6.98□□□□□ -1.29
SMAD4-202ENST00000398417 ERICH6Q7L0X2 663 aa6.97□□□□□ -1.29
SMAD4-202ENST00000398417 CUX2O14529 1486 aa6.97□□□□□ -1.29
SMAD4-202ENST00000398417 SMARCA4P51532 1647 aa6.96□□□□□ -1.3
SMAD4-202ENST00000398417 RRP7BPQ9NSQ0 103 aa6.95□□□□□ -1.3
SMAD4-202ENST00000398417 CCNB3Q8WWL7 1395 aa6.95□□□□□ -1.3
SMAD4-202ENST00000398417 KCNH8Q96L42 1107 aa6.95□□□□□ -1.3
SMAD4-202ENST00000398417 SUPT16HQ9Y5B9 1047 aaKnown RBP6.95□□□□□ -1.3
SMAD4-202ENST00000398417 IGF1RP08069 1367 aa6.94□□□□□ -1.3
SMAD4-202ENST00000398417 ZNF326Q5BKZ1 582 aaKnown RBP6.93□□□□□ -1.3
SMAD4-202ENST00000398417 RAB3GAP2Q9H2M9 1393 aa6.93□□□□□ -1.3
SMAD4-202ENST00000398417 KIF21BO75037 1637 aa6.92□□□□□ -1.3
SMAD4-202ENST00000398417 ZNF777Q9ULD5 760 aaPredicted RBP6.92□□□□□ -1.3
SMAD4-202ENST00000398417 TONSLQ96HA7 1378 aa6.92□□□□□ -1.3
SMAD4-202ENST00000398417 FBLN2P98095 1184 aa6.92□□□□□ -1.3
SMAD4-202ENST00000398417 IRX6P78412 446 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms