RNA–Protein interactions for RNA: ENST00000640481.1

NECAP1-226, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 3,216 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-226ENST00000640481 NISCHQ9Y2I1 1504 aa14.7□□□□□ -0.06
NECAP1-226ENST00000640481 CCDC180Q9P1Z9 1646 aa12.61□□□□□ -0.39
NECAP1-226ENST00000640481 ZCCHC6Q5VYS8 1495 aaKnown RBP12.37□□□□□ -0.43
NECAP1-226ENST00000640481 SHROOM4Q9ULL8 1493 aa12.31□□□□□ -0.44
NECAP1-226ENST00000640481 DCAF8L2P0C7V8 631 aa12.28□□□□□ -0.44
NECAP1-226ENST00000640481 DCAF1Q9Y4B6 1507 aa12.08□□□□□ -0.48
NECAP1-226ENST00000640481 SUPT5HO00267 1087 aaKnown RBP11.97□□□□□ -0.49
NECAP1-226ENST00000640481 ABCC9O60706 1549 aa11.91□□□□□ -0.5
NECAP1-226ENST00000640481 MYO15BQ96JP2 1530 aa11.84□□□□□ -0.51
NECAP1-226ENST00000640481 SCRIBQ14160 1630 aa11.76□□□□□ -0.53
NECAP1-226ENST00000640481 NACADO15069 1562 aa11.74□□□□□ -0.53
NECAP1-226ENST00000640481 RB1CC1Q8TDY2 1594 aa11.6□□□□□ -0.55
NECAP1-226ENST00000640481 RSF1Q96T23 1441 aaPredicted RBP11.53□□□□□ -0.56
NECAP1-226ENST00000640481 CHIC1Q5VXU3 224 aa11.52□□□□□ -0.57
NECAP1-226ENST00000640481 CECR2Q9BXF3 1484 aa11.48□□□□□ -0.57
NECAP1-226ENST00000640481 MROH2BQ7Z745 1585 aa11.4□□□□□ -0.58
NECAP1-226ENST00000640481 UNC13AQ9UPW8 1703 aa11.38□□□□□ -0.59
NECAP1-226ENST00000640481 PABPN1Q86U42 306 aaKnown RBP eCLIP11.35□□□□□ -0.59
NECAP1-226ENST00000640481 WIZO95785 1651 aa11.32□□□□□ -0.6
NECAP1-226ENST00000640481 BAZ1AQ9NRL2 1556 aaPredicted RBP11.31□□□□□ -0.6
NECAP1-226ENST00000640481 BICRAQ9NZM4 1560 aa11.28□□□□□ -0.6
NECAP1-226ENST00000640481 SMARCA4P51532 1647 aa11.24□□□□□ -0.61
NECAP1-226ENST00000640481 TRIM41Q8WV44 630 aa11.19□□□□□ -0.62
NECAP1-226ENST00000640481 LOC105371045A0A1W2PR82 267 aa11.16□□□□□ -0.62
NECAP1-226ENST00000640481 TOP2AP11388 1531 aaKnown RBP11.15□□□□□ -0.63
NECAP1-226ENST00000640481 CCDC88BA6NC98 1476 aa11.1□□□□□ -0.63
NECAP1-226ENST00000640481 SMARCA2P51531 1590 aa11.07□□□□□ -0.64
NECAP1-226ENST00000640481 FAM9AQ8IZU1 332 aaPredicted RBP11.07□□□□□ -0.64
NECAP1-226ENST00000640481 PEG3Q9GZU2 1588 aa11.04□□□□□ -0.64
NECAP1-226ENST00000640481 ATAD2BQ9ULI0 1458 aa11.03□□□□□ -0.64
NECAP1-226ENST00000640481 EIF4G1Q04637 1599 aaKnown RBP11.03□□□□□ -0.64
NECAP1-226ENST00000640481 BAZ1BQ9UIG0 1483 aaKnown RBP10.98□□□□□ -0.65
NECAP1-226ENST00000640481 ABCC8Q09428 1581 aa10.96□□□□□ -0.65
NECAP1-226ENST00000640481 EHMT2Q96KQ7 1210 aa10.96□□□□□ -0.66
NECAP1-226ENST00000640481 NCAPD3P42695 1498 aa10.88□□□□□ -0.67
NECAP1-226ENST00000640481 PCGF6Q9BYE7 350 aa10.87□□□□□ -0.67
NECAP1-226ENST00000640481 WRNQ14191 1432 aaPredicted RBP eCLIP10.84□□□□□ -0.67
NECAP1-226ENST00000640481 HMGXB3Q12766 1538 aa10.84□□□□□ -0.67
NECAP1-226ENST00000640481 SOGA1O94964 1423 aa10.82□□□□□ -0.68
NECAP1-226ENST00000640481 RUSC2Q8N2Y8 1516 aa10.78□□□□□ -0.68
NECAP1-226ENST00000640481 CSRNP3Q8WYN3 585 aa10.77□□□□□ -0.68
NECAP1-226ENST00000640481 SYNJ1O43426 1573 aa10.77□□□□□ -0.69
NECAP1-226ENST00000640481 EEA1Q15075 1411 aa10.74□□□□□ -0.69
NECAP1-226ENST00000640481 TRIM26Q12899 539 aaPredicted RBP10.74□□□□□ -0.69
NECAP1-226ENST00000640481 CC2D2AQ9P2K1 1620 aa10.72□□□□□ -0.69
NECAP1-226ENST00000640481 CFTRP13569 1480 aa10.71□□□□□ -0.7
NECAP1-226ENST00000640481 UBTFP17480 764 aaKnown RBP10.7□□□□□ -0.7
NECAP1-226ENST00000640481 HRCP23327 699 aa10.67□□□□□ -0.7
NECAP1-226ENST00000640481 TOP2BQ02880 1626 aa10.67□□□□□ -0.7
NECAP1-226ENST00000640481 TNIKQ9UKE5 1360 aa10.67□□□□□ -0.7
NECAP1-226ENST00000640481 PPARGC1BQ86YN6 1023 aaKnown RBP10.66□□□□□ -0.7
NECAP1-226ENST00000640481 CADPSQ9ULU8 1353 aa10.65□□□□□ -0.7
NECAP1-226ENST00000640481 CEP162Q5TB80 1403 aa10.64□□□□□ -0.71
NECAP1-226ENST00000640481 GOLGA3Q08378 1498 aa10.64□□□□□ -0.71
NECAP1-226ENST00000640481 BIVM-ERCC5R4GMW8 1640 aa10.63□□□□□ -0.71
NECAP1-226ENST00000640481 CUX1P39880 1505 aa10.63□□□□□ -0.71
NECAP1-226ENST00000640481 CEP164Q9UPV0 1460 aa10.61□□□□□ -0.71
NECAP1-226ENST00000640481 KIF21BO75037 1637 aa10.58□□□□□ -0.72
NECAP1-226ENST00000640481 RAPGEF2Q9Y4G8 1499 aa10.57□□□□□ -0.72
NECAP1-226ENST00000640481 PRDM2Q13029 1718 aa10.56□□□□□ -0.72
NECAP1-226ENST00000640481 DNAJC5BQ9UF47 199 aa10.55□□□□□ -0.72
NECAP1-226ENST00000640481 KIF27Q86VH2 1401 aa10.54□□□□□ -0.72
NECAP1-226ENST00000640481 RANGAP1P46060 587 aaPredicted RBP10.53□□□□□ -0.72
NECAP1-226ENST00000640481 NESP48681 1621 aa10.53□□□□□ -0.72
NECAP1-226ENST00000640481 TTBK1Q5TCY1 1321 aaPredicted RBP10.53□□□□□ -0.72
NECAP1-226ENST00000640481 FANCD2Q9BXW9 1451 aa10.53□□□□□ -0.72
NECAP1-226ENST00000640481 CLIP1P30622 1438 aa10.52□□□□□ -0.73
NECAP1-226ENST00000640481 PRXQ9BXM0 1461 aa10.51□□□□□ -0.73
NECAP1-226ENST00000640481 FGD5Q6ZNL6 1462 aa10.49□□□□□ -0.73
NECAP1-226ENST00000640481 CUX2O14529 1486 aa10.48□□□□□ -0.73
NECAP1-226ENST00000640481 ERICH3Q5RHP9 1530 aa10.47□□□□□ -0.73
NECAP1-226ENST00000640481 IGF1RP08069 1367 aa10.46□□□□□ -0.74
NECAP1-226ENST00000640481 LAMC3Q9Y6N6 1575 aa10.44□□□□□ -0.74
NECAP1-226ENST00000640481 VPS8Q8N3P4 1428 aa10.43□□□□□ -0.74
NECAP1-226ENST00000640481 TOPBP1Q92547 1522 aa10.43□□□□□ -0.74
NECAP1-226ENST00000640481 DNMBPQ6XZF7 1577 aa10.42□□□□□ -0.74
NECAP1-226ENST00000640481 RAD54L2Q9Y4B4 1467 aa10.42□□□□□ -0.74
NECAP1-226ENST00000640481 CARMIL1Q5VZK9 1371 aa10.41□□□□□ -0.74
NECAP1-226ENST00000640481 POLA1P09884 1462 aaPredicted RBP10.41□□□□□ -0.74
NECAP1-226ENST00000640481 APLP2Q06481 763 aa10.41□□□□□ -0.74
NECAP1-226ENST00000640481 PDS5BQ9NTI5 1447 aa10.4□□□□□ -0.74
NECAP1-226ENST00000640481 ZEB1P37275 1124 aaPredicted RBP10.39□□□□□ -0.75
NECAP1-226ENST00000640481 URB2Q14146 1524 aaKnown RBP10.38□□□□□ -0.75
NECAP1-226ENST00000640481 ABCA10Q8WWZ4 1543 aa10.37□□□□□ -0.75
NECAP1-226ENST00000640481 ARAP1Q96P48 1450 aa10.36□□□□□ -0.75
NECAP1-226ENST00000640481 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.36□□□□□ -0.75
NECAP1-226ENST00000640481 ARHGAP35Q9NRY4 1499 aa10.33□□□□□ -0.76
NECAP1-226ENST00000640481 KIF21AQ7Z4S6 1674 aa10.33□□□□□ -0.76
NECAP1-226ENST00000640481 TDRD9Q8NDG6 1382 aaKnown RBP10.33□□□□□ -0.76
NECAP1-226ENST00000640481 CCER1Q8TC90 406 aaPredicted RBP10.32□□□□□ -0.76
NECAP1-226ENST00000640481 KANK4Q5T7N3 995 aaPredicted RBP10.29□□□□□ -0.76
NECAP1-226ENST00000640481 HNRNPUL2Q1KMD3 747 aaKnown RBP10.28□□□□□ -0.76
NECAP1-226ENST00000640481 P3H3Q8IVL6 736 aa10.28□□□□□ -0.76
NECAP1-226ENST00000640481 GAPVD1Q14C86 1478 aa10.27□□□□□ -0.77
NECAP1-226ENST00000640481 WDR97A6NE52 1622 aa10.26□□□□□ -0.77
NECAP1-226ENST00000640481 CUL7Q14999 1698 aa10.25□□□□□ -0.77
NECAP1-226ENST00000640481 ABCA5Q8WWZ7 1642 aa10.24□□□□□ -0.77
NECAP1-226ENST00000640481 MRC2Q9UBG0 1479 aa10.24□□□□□ -0.77
NECAP1-226ENST00000640481 TARBP1Q13395 1621 aaKnown RBP10.23□□□□□ -0.77
NECAP1-226ENST00000640481 ATP1B4Q9UN42 357 aaPredicted RBP10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms