Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.873e-7■■□□□ 13.4
YBX3P16989 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.848e-12■■□□□ 13.4
YBX3P16989 ANKRD23-204ENST00000462692 857 ntTSL 520.94■□□□□ 0.943e-7■■□□□ 13.4
YBX3P16989 ANKRD39-202ENST00000443120 4965 ntTSL 215.44■□□□□ 0.063e-7■■□□□ 13.4
YBX3P16989 EIF5-207ENST00000558800 552 ntTSL 25.46□□□□□ -1.546e-7■■□□□ 13.4
YBX3P16989 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC25.12■■□□□ 1.611e-9■■□□□ 13.4
YBX3P16989 APLP2-219ENST00000533616 2041 ntTSL 221.77■■□□□ 1.081e-9■■□□□ 13.4
YBX3P16989 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.27■□□□□ 0.681e-9■■□□□ 13.4
YBX3P16989 NAGA-201ENST00000396398 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.423e-6■■□□□ 13.4
YBX3P16989 UBQLN1-206ENST00000533705 6055 ntTSL 1 (best)6.55□□□□□ -1.368e-9■■□□□ 13.4
YBX3P16989 S100A1-204ENST00000436839 236 ntTSL 316.35■□□□□ 0.211e-6■■□□□ 13.4
YBX3P16989 S100A1-203ENST00000368698 784 ntTSL 2 BASIC15.76■□□□□ 0.111e-6■■□□□ 13.4
YBX3P16989 S100A1-201ENST00000292169 594 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.211e-6■■□□□ 13.4
YBX3P16989 S100A1-205ENST00000469893 2621 ntTSL 1 (best)13.1□□□□□ -0.311e-6■■□□□ 13.4
YBX3P16989 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC8.15□□□□□ -1.11e-6■■□□□ 13.4
YBX3P16989 RAE1-208ENST00000492498 1156 ntTSL 521.48■■□□□ 1.034e-6■■□□□ 13.4
YBX3P16989 RAE1-209ENST00000527947 1503 ntTSL 1 (best) BASIC15.98■□□□□ 0.154e-6■■□□□ 13.4
YBX3P16989 RAE1-203ENST00000395841 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.454e-6■■□□□ 13.4
YBX3P16989 RAE1-201ENST00000371242 2362 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.464e-6■■□□□ 13.4
YBX3P16989 SOCS2-211ENST00000551883 719 ntTSL 26.52□□□□□ -1.374e-7■■□□□ 13.4
YBX3P16989 VCL-205ENST00000478896 727 ntTSL 518.22■□□□□ 0.515e-8■■□□□ 13.4
YBX3P16989 MYH9-209ENST00000477189 572 ntTSL 218.4■□□□□ 0.541e-8■■□□□ 13.4
YBX3P16989 ZKSCAN1-205ENST00000535170 8758 ntTSL 2 BASIC11.32□□□□□ -0.63e-7■■□□□ 13.4
YBX3P16989 ZKSCAN1-206ENST00000620510 9192 ntTSL 5 BASIC10.73□□□□□ -0.693e-7■■□□□ 13.4
YBX3P16989 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.913e-7■■□□□ 13.4
YBX3P16989 AC017083.4-201ENST00000406334 2306 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.114e-6■■□□□ 13.4
YBX3P16989 MBOAT2-207ENST00000477073 754 ntTSL 327.42■■□□□ 1.982e-7■■□□□ 13.4
YBX3P16989 MBOAT2-209ENST00000486484 1351 ntTSL 26.29□□□□□ -1.42e-7■■□□□ 13.4
YBX3P16989 MBOAT2-206ENST00000474341 713 ntTSL 55.22□□□□□ -1.572e-7■■□□□ 13.4
YBX3P16989 PHB2-209ENST00000544134 652 ntTSL 326.16■■□□□ 1.781e-21■■□□□ 13.4
YBX3P16989 RNF2-204ENST00000498201 631 ntTSL 223.14■■□□□ 1.292e-14■■□□□ 13.4
YBX3P16989 RNF2-203ENST00000453650 939 ntTSL 59.48□□□□□ -0.892e-14■■□□□ 13.4
YBX3P16989 CCNK-209ENST00000557441 936 ntTSL 517.51■□□□□ 0.397e-7■■□□□ 13.4
YBX3P16989 CCNK-208ENST00000557165 955 ntTSL 512.93□□□□□ -0.347e-7■■□□□ 13.4
YBX3P16989 CCNK-207ENST00000556641 747 ntTSL 212.88□□□□□ -0.357e-7■■□□□ 13.4
YBX3P16989 ARHGAP19-203ENST00000371027 2301 ntTSL 2 BASIC11.97□□□□□ -0.493e-6■■□□□ 13.4
YBX3P16989 PMM1-207ENST00000482178 2020 ntTSL 214.14□□□□□ -0.152e-6■■□□□ 13.4
YBX3P16989 ME2-214ENST00000639665 2090 ntTSL 526.83■■□□□ 1.892e-7■■□□□ 13.4
YBX3P16989 ME2-211ENST00000639398 2127 ntTSL 526.12■■□□□ 1.772e-7■■□□□ 13.4
YBX3P16989 ME2-210ENST00000639255 2262 ntTSL 5 BASIC24.14■■□□□ 1.462e-7■■□□□ 13.4
YBX3P16989 ME2-206ENST00000638410 2289 ntTSL 5 BASIC24.14■■□□□ 1.462e-7■■□□□ 13.4
YBX3P16989 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.31■■□□□ 1.322e-7■■□□□ 13.4
YBX3P16989 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC22.81■■□□□ 1.242e-7■■□□□ 13.4
YBX3P16989 ME2-216ENST00000639850 2331 ntTSL 5 BASIC22.42■■□□□ 1.182e-7■■□□□ 13.4
YBX3P16989 ME2-217ENST00000640530 2426 ntTSL 522.29■■□□□ 1.162e-7■■□□□ 13.4
YBX3P16989 ME2-209ENST00000639115 2524 ntTSL 521.47■■□□□ 1.032e-7■■□□□ 13.4
YBX3P16989 ME2-219ENST00000640967 2569 ntTSL 521.37■■□□□ 1.012e-7■■□□□ 13.4
YBX3P16989 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.88■□□□□ 0.932e-7■■□□□ 13.4
YBX3P16989 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.022e-7■■□□□ 13.4
YBX3P16989 ME2-212ENST00000639612 1281 ntTSL 58.49□□□□□ -1.052e-7■■□□□ 13.4
YBX3P16989 ME2-203ENST00000585680 1792 ntTSL 56.38□□□□□ -1.392e-7■■□□□ 13.4
YBX3P16989 ALYREF-203ENST00000511412 533 ntTSL 333.4■■■□□ 2.942e-7■■□□□ 13.4
YBX3P16989 FPGS-212ENST00000475765 898 ntTSL 230.3■■■□□ 2.441e-7■■□□□ 13.4
YBX3P16989 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.39■■■□□ 2.291e-7■■□□□ 13.4
YBX3P16989 FPGS-215ENST00000481552 504 ntTSL 528.29■■■□□ 2.121e-7■■□□□ 13.4
YBX3P16989 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.4■■□□□ 1.821e-7■■□□□ 13.4
YBX3P16989 FPGS-219ENST00000496586 567 ntTSL 325.76■■□□□ 1.711e-7■■□□□ 13.4
YBX3P16989 FPGS-220ENST00000497386 1060 ntTSL 225.11■■□□□ 1.611e-7■■□□□ 13.4
YBX3P16989 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.73■■□□□ 1.551e-7■■□□□ 13.4
YBX3P16989 ALYREF-204ENST00000512673 441 ntTSL 223.07■■□□□ 1.282e-7■■□□□ 13.4
YBX3P16989 FPGS-216ENST00000488307 1172 ntTSL 521.89■■□□□ 1.091e-7■■□□□ 13.4
YBX3P16989 FPGS-205ENST00000423577 677 ntTSL 521.41■■□□□ 1.021e-7■■□□□ 13.4
YBX3P16989 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.931e-7■■□□□ 13.4
YBX3P16989 FPGS-207ENST00000460181 2206 ntTSL 1 (best)20.41■□□□□ 0.861e-7■■□□□ 13.4
YBX3P16989 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.04■□□□□ 0.81e-7■■□□□ 13.4
YBX3P16989 FPGS-214ENST00000479375 690 ntTSL 518.29■□□□□ 0.521e-7■■□□□ 13.4
YBX3P16989 FPGS-213ENST00000479147 816 ntTSL 518.29■□□□□ 0.521e-7■■□□□ 13.4
YBX3P16989 FPGS-206ENST00000431857 959 ntTSL 517.19■□□□□ 0.341e-7■■□□□ 13.4
YBX3P16989 DLST-202ENST00000334220 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.333e-7■■□□□ 13.4
YBX3P16989 PDLIM4-203ENST00000418373 538 ntTSL 517.67■□□□□ 0.427e-7■■□□□ 13.4
YBX3P16989 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.21e-6■■□□□ 13.4
YBX3P16989 NT5DC3-203ENST00000447799 2172 ntTSL 29.85□□□□□ -0.831e-6■■□□□ 13.4
YBX3P16989 CSNK1G2-207ENST00000590106 1006 ntTSL 519.24■□□□□ 0.671e-7■■□□□ 13.4
YBX3P16989 POLR1B-206ENST00000430293 595 ntTSL 416.87■□□□□ 0.294e-6■■□□□ 13.4
YBX3P16989 RELN-205ENST00000473457 641 ntTSL 311.45□□□□□ -0.585e-10■■□□□ 13.4
YBX3P16989 FARSA-205ENST00000587488 514 ntTSL 317.93■□□□□ 0.461e-17■■□□□ 13.4
YBX3P16989 AGAP3-220ENST00000486946 431 ntTSL 317.05■□□□□ 0.329e-11■■□□□ 13.4
YBX3P16989 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.644e-6■■□□□ 13.4
YBX3P16989 CPSF3-202ENST00000460593 3157 ntTSL 1 (best) BASIC11.76□□□□□ -0.534e-6■■□□□ 13.4
YBX3P16989 P4HB-221ENST00000576052 562 ntTSL 425.95■■□□□ 1.742e-12■■□□□ 13.4
YBX3P16989 CNOT3-207ENST00000496327 784 ntTSL 521.31■■□□□ 16e-10■■□□□ 13.4
YBX3P16989 CNOT3-208ENST00000613073 2778 ntTSL 217.63■□□□□ 0.416e-10■■□□□ 13.4
YBX3P16989 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.15■□□□□ 0.186e-10■■□□□ 13.4
YBX3P16989 CNOT3-205ENST00000457463 1269 ntTSL 315.7■□□□□ 0.16e-10■■□□□ 13.4
YBX3P16989 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.016e-10■■□□□ 13.4
YBX3P16989 CNOT3-210ENST00000618939 4516 ntTSL 514.25□□□□□ -0.136e-10■■□□□ 13.4
YBX3P16989 CNOT3-202ENST00000358389 4118 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.596e-10■■□□□ 13.4
YBX3P16989 DAP3-209ENST00000465375 729 ntTSL 2 BASIC7.85□□□□□ -1.159e-11■■□□□ 13.4
YBX3P16989 DAP3-226ENST00000608852 384 ntTSL 37.78□□□□□ -1.169e-11■■□□□ 13.4
YBX3P16989 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.062e-9■■□□□ 13.4
YBX3P16989 DDB1-217ENST00000540166 3906 ntTSL 210.09□□□□□ -0.792e-9■■□□□ 13.4
YBX3P16989 RANGAP1-201ENST00000356244 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.238e-9■■□□□ 13.4
YBX3P16989 RANGAP1-202ENST00000405486 3469 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.268e-9■■□□□ 13.4
YBX3P16989 RANGAP1-207ENST00000455915 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.68e-9■■□□□ 13.4
YBX3P16989 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.372e-8■■□□□ 13.4
YBX3P16989 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.392e-8■■□□□ 13.4
YBX3P16989 RPL19-202ENST00000577741 1303 ntTSL 212.44□□□□□ -0.422e-49■■□□□ 13.4
YBX3P16989 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.372e-7■■□□□ 13.4
YBX3P16989 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.32e-7■■□□□ 13.4
YBX3P16989 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC8.38□□□□□ -1.072e-7■■□□□ 13.4
Retrieved 100 of 29,075 protein–RNA pairs in 240.5 ms