RNA–Protein interactions for RNA: ENST00000314191.6

PRKDC-201, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKDC, Length 13,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-201ENST00000314191 NISCHQ9Y2I1 1504 aa11.57□□□□□ -0.56
PRKDC-201ENST00000314191 DCAF8L2P0C7V8 631 aa11.14□□□□□ -0.63
PRKDC-201ENST00000314191 SUPT5HO00267 1087 aaKnown RBP10.74□□□□□ -0.69
PRKDC-201ENST00000314191 SHROOM4Q9ULL8 1493 aa10.73□□□□□ -0.69
PRKDC-201ENST00000314191 EHMT2Q96KQ7 1210 aa10.19□□□□□ -0.78
PRKDC-201ENST00000314191 FAM9AQ8IZU1 332 aaPredicted RBP10.06□□□□□ -0.8
PRKDC-201ENST00000314191 TRIM41Q8WV44 630 aa9.91□□□□□ -0.82
PRKDC-201ENST00000314191 PCGF6Q9BYE7 350 aa9.87□□□□□ -0.83
PRKDC-201ENST00000314191 CHIC1Q5VXU3 224 aa9.87□□□□□ -0.83
PRKDC-201ENST00000314191 TTBK1Q5TCY1 1321 aaPredicted RBP9.8□□□□□ -0.84
PRKDC-201ENST00000314191 ABCC9O60706 1549 aa9.78□□□□□ -0.84
PRKDC-201ENST00000314191 LOC105371045A0A1W2PR82 267 aa9.76□□□□□ -0.85
PRKDC-201ENST00000314191 RANGAP1P46060 587 aaPredicted RBP9.71□□□□□ -0.85
PRKDC-201ENST00000314191 APLP2Q06481 763 aa9.67□□□□□ -0.86
PRKDC-201ENST00000314191 PPARGC1BQ86YN6 1023 aaKnown RBP9.67□□□□□ -0.86
PRKDC-201ENST00000314191 ZCCHC6Q5VYS8 1495 aaKnown RBP9.65□□□□□ -0.86
PRKDC-201ENST00000314191 PABPN1Q86U42 306 aaKnown RBP eCLIP9.65□□□□□ -0.86
PRKDC-201ENST00000314191 UBTFP17480 764 aaKnown RBP9.64□□□□□ -0.87
PRKDC-201ENST00000314191 CCER1Q8TC90 406 aaPredicted RBP9.53□□□□□ -0.88
PRKDC-201ENST00000314191 TRIM26Q12899 539 aaPredicted RBP9.53□□□□□ -0.88
PRKDC-201ENST00000314191 HRCP23327 699 aa9.49□□□□□ -0.89
PRKDC-201ENST00000314191 ATP1B4Q9UN42 357 aaPredicted RBP9.48□□□□□ -0.89
PRKDC-201ENST00000314191 ZEB1P37275 1124 aaPredicted RBP9.45□□□□□ -0.9
PRKDC-201ENST00000314191 SCRIBQ14160 1630 aa9.36□□□□□ -0.91
PRKDC-201ENST00000314191 HNRNPUL2Q1KMD3 747 aaKnown RBP9.35□□□□□ -0.91
PRKDC-201ENST00000314191 CCDC180Q9P1Z9 1646 aa9.34□□□□□ -0.92
PRKDC-201ENST00000314191 RSF1Q96T23 1441 aaPredicted RBP9.31□□□□□ -0.92
PRKDC-201ENST00000314191 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.3□□□□□ -0.92
PRKDC-201ENST00000314191 ITGAEP38570 1179 aa9.3□□□□□ -0.92
PRKDC-201ENST00000314191 CSRNP3Q8WYN3 585 aa9.28□□□□□ -0.92
PRKDC-201ENST00000314191 MYO15BQ96JP2 1530 aa9.25□□□□□ -0.93
PRKDC-201ENST00000314191 YTHDC1Q96MU7 727 aaKnown RBP9.2□□□□□ -0.94
PRKDC-201ENST00000314191 CECR2Q9BXF3 1484 aa9.2□□□□□ -0.94
PRKDC-201ENST00000314191 DCAF1Q9Y4B6 1507 aa9.19□□□□□ -0.94
PRKDC-201ENST00000314191 CENPBP07199 599 aaPredicted RBP9.18□□□□□ -0.94
PRKDC-201ENST00000314191 P3H3Q8IVL6 736 aa9.12□□□□□ -0.95
PRKDC-201ENST00000314191 FAM50AQ14320 339 aaKnown RBP9.1□□□□□ -0.95
PRKDC-201ENST00000314191 NACADO15069 1562 aa9.09□□□□□ -0.95
PRKDC-201ENST00000314191 RB1CC1Q8TDY2 1594 aa9.09□□□□□ -0.95
PRKDC-201ENST00000314191 DIEXFQ68CQ4 756 aaKnown RBP9.06□□□□□ -0.96
PRKDC-201ENST00000314191 PELP1Q8IZL8 1130 aaKnown RBP9.03□□□□□ -0.96
PRKDC-201ENST00000314191 MROH2BQ7Z745 1585 aa9.03□□□□□ -0.96
PRKDC-201ENST00000314191 ARID3CA6NKF2 412 aa9.01□□□□□ -0.97
PRKDC-201ENST00000314191 FBLN2P98095 1184 aa9.01□□□□□ -0.97
PRKDC-201ENST00000314191 NEUROD1Q13562 356 aa9□□□□□ -0.97
PRKDC-201ENST00000314191 WRNQ14191 1432 aaPredicted RBP eCLIP8.98□□□□□ -0.97
PRKDC-201ENST00000314191 TRIM52Q96A61 297 aa8.97□□□□□ -0.97
PRKDC-201ENST00000314191 BAZ1AQ9NRL2 1556 aaPredicted RBP8.96□□□□□ -0.98
PRKDC-201ENST00000314191 SOGA1O94964 1423 aa8.95□□□□□ -0.98
PRKDC-201ENST00000314191 CNGB1Q14028 1251 aaPredicted RBP8.95□□□□□ -0.98
PRKDC-201ENST00000314191 POLR3GLQ9BT43 218 aa8.94□□□□□ -0.98
PRKDC-201ENST00000314191 CEP162Q5TB80 1403 aa8.94□□□□□ -0.98
PRKDC-201ENST00000314191 BAZ1BQ9UIG0 1483 aaKnown RBP8.93□□□□□ -0.98
PRKDC-201ENST00000314191 ZNF316A6NFI3 1004 aaPredicted RBP8.93□□□□□ -0.98
PRKDC-201ENST00000314191 MYT1LQ9UL68 1186 aa8.93□□□□□ -0.98
PRKDC-201ENST00000314191 CLIP1P30622 1438 aa8.92□□□□□ -0.98
PRKDC-201ENST00000314191 CCDC88BA6NC98 1476 aa8.91□□□□□ -0.98
PRKDC-201ENST00000314191 TNIKQ9UKE5 1360 aa8.91□□□□□ -0.98
PRKDC-201ENST00000314191 MYT1Q01538 1121 aa8.9□□□□□ -0.98
PRKDC-201ENST00000314191 EEA1Q15075 1411 aa8.9□□□□□ -0.99
PRKDC-201ENST00000314191 GOLGA3Q08378 1498 aa8.88□□□□□ -0.99
PRKDC-201ENST00000314191 NEFLP07196 543 aa8.87□□□□□ -0.99
PRKDC-201ENST00000314191 ZNF777Q9ULD5 760 aaPredicted RBP8.84□□□□□ -0.99
PRKDC-201ENST00000314191 GTF3C3Q9Y5Q9 886 aa8.82□□□□□ -1
PRKDC-201ENST00000314191 ZNF326Q5BKZ1 582 aaKnown RBP8.82□□□□□ -1
PRKDC-201ENST00000314191 CHIC2Q9UKJ5 165 aa8.81□□□□□ -1
PRKDC-201ENST00000314191 CEP164Q9UPV0 1460 aa8.81□□□□□ -1
PRKDC-201ENST00000314191 ABCC8Q09428 1581 aa8.81□□□□□ -1
PRKDC-201ENST00000314191 KIF27Q86VH2 1401 aa8.8□□□□□ -1
PRKDC-201ENST00000314191 ATAD2BQ9ULI0 1458 aa8.78□□□□□ -1
PRKDC-201ENST00000314191 ACIN1Q9UKV3 1341 aaKnown RBP8.77□□□□□ -1
PRKDC-201ENST00000314191 CDK11AQ9UQ88 783 aaPredicted RBP8.76□□□□□ -1.01
PRKDC-201ENST00000314191 WIZO95785 1651 aa8.76□□□□□ -1.01
PRKDC-201ENST00000314191 MTUS2Q5JR59 1369 aa8.76□□□□□ -1.01
PRKDC-201ENST00000314191 RUSC2Q8N2Y8 1516 aa8.75□□□□□ -1.01
PRKDC-201ENST00000314191 TOP2AP11388 1531 aaKnown RBP8.75□□□□□ -1.01
PRKDC-201ENST00000314191 KANK4Q5T7N3 995 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-201ENST00000314191 CUX2O14529 1486 aa8.74□□□□□ -1.01
PRKDC-201ENST00000314191 CHMP7Q8WUX9 453 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-201ENST00000314191 CARMIL1Q5VZK9 1371 aa8.73□□□□□ -1.01
PRKDC-201ENST00000314191 DDX10Q13206 875 aaKnown RBP8.73□□□□□ -1.01
PRKDC-201ENST00000314191 ANP32CO43423 234 aa8.72□□□□□ -1.01
PRKDC-201ENST00000314191 HIRIP3Q9BW71 556 aaPredicted RBP8.72□□□□□ -1.01
PRKDC-201ENST00000314191 MIER1Q8N108 512 aa8.71□□□□□ -1.01
PRKDC-201ENST00000314191 RRP7BPQ9NSQ0 103 aa8.71□□□□□ -1.02
PRKDC-201ENST00000314191 BCANQ96GW7 911 aa8.7□□□□□ -1.02
PRKDC-201ENST00000314191 TONSLQ96HA7 1378 aa8.7□□□□□ -1.02
PRKDC-201ENST00000314191 ERICH6Q7L0X2 663 aa8.7□□□□□ -1.02
PRKDC-201ENST00000314191 TDRD9Q8NDG6 1382 aaKnown RBP8.69□□□□□ -1.02
PRKDC-201ENST00000314191 CADPSQ9ULU8 1353 aa8.69□□□□□ -1.02
PRKDC-201ENST00000314191 SMARCA2P51531 1590 aa8.69□□□□□ -1.02
PRKDC-201ENST00000314191 VPS8Q8N3P4 1428 aa8.68□□□□□ -1.02
PRKDC-201ENST00000314191 SIN3AQ96ST3 1273 aa8.68□□□□□ -1.02
PRKDC-201ENST00000314191 SLC4A1APQ9BWU0 796 aaKnown RBP8.65□□□□□ -1.03
PRKDC-201ENST00000314191 SMARCA4P51532 1647 aa8.64□□□□□ -1.03
PRKDC-201ENST00000314191 RAPGEF2Q9Y4G8 1499 aa8.64□□□□□ -1.03
PRKDC-201ENST00000314191 SCAF1Q9H7N4 1312 aaKnown RBP8.62□□□□□ -1.03
PRKDC-201ENST00000314191 CCNB3Q8WWL7 1395 aa8.62□□□□□ -1.03
PRKDC-201ENST00000314191 TSPY4P0CV99 314 aa8.62□□□□□ -1.03
PRKDC-201ENST00000314191 TSPY10P0CW01 314 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms