RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NISCHQ9Y2I1 1504 aa22.14■■□□□ 1.14
CPSF3-202ENST00000460593 SHROOM4Q9ULL8 1493 aa20.03■□□□□ 0.8
CPSF3-202ENST00000460593 SUPT5HO00267 1087 aaKnown RBP19.91■□□□□ 0.78
CPSF3-202ENST00000460593 HRCP23327 699 aa19.84■□□□□ 0.77
CPSF3-202ENST00000460593 PPARGC1BQ86YN6 1023 aaKnown RBP19.73■□□□□ 0.75
CPSF3-202ENST00000460593 PCGF6Q9BYE7 350 aa19.66■□□□□ 0.74
CPSF3-202ENST00000460593 MYO15BQ96JP2 1530 aa19.55■□□□□ 0.72
CPSF3-202ENST00000460593 CHIC1Q5VXU3 224 aa19.38■□□□□ 0.69
CPSF3-202ENST00000460593 LOC105371045A0A1W2PR82 267 aa19.13■□□□□ 0.65
CPSF3-202ENST00000460593 DCAF8L2P0C7V8 631 aa18.94■□□□□ 0.62
CPSF3-202ENST00000460593 SCAF1Q9H7N4 1312 aaKnown RBP18.86■□□□□ 0.61
CPSF3-202ENST00000460593 DCAF1Q9Y4B6 1507 aa18.84■□□□□ 0.61
CPSF3-202ENST00000460593 TRIM26Q12899 539 aaPredicted RBP18.82■□□□□ 0.6
CPSF3-202ENST00000460593 ZCCHC6Q5VYS8 1495 aaKnown RBP18.8■□□□□ 0.6
CPSF3-202ENST00000460593 PELP1Q8IZL8 1130 aaKnown RBP18.78■□□□□ 0.6
CPSF3-202ENST00000460593 EHMT2Q96KQ7 1210 aa18.6■□□□□ 0.57
CPSF3-202ENST00000460593 CCDC180Q9P1Z9 1646 aa18.58■□□□□ 0.56
CPSF3-202ENST00000460593 ZEB1P37275 1124 aaPredicted RBP18.5■□□□□ 0.55
CPSF3-202ENST00000460593 FAM9AQ8IZU1 332 aaPredicted RBP18.49■□□□□ 0.55
CPSF3-202ENST00000460593 NEUROD1Q13562 356 aa18.38■□□□□ 0.53
CPSF3-202ENST00000460593 ACIN1Q9UKV3 1341 aaKnown RBP18.31■□□□□ 0.52
CPSF3-202ENST00000460593 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.27■□□□□ 0.51
CPSF3-202ENST00000460593 GTF3C3Q9Y5Q9 886 aa18.26■□□□□ 0.51
CPSF3-202ENST00000460593 TRIM41Q8WV44 630 aa18.26■□□□□ 0.51
CPSF3-202ENST00000460593 CCER1Q8TC90 406 aaPredicted RBP18.13■□□□□ 0.49
CPSF3-202ENST00000460593 TTBK1Q5TCY1 1321 aaPredicted RBP18.1■□□□□ 0.49
CPSF3-202ENST00000460593 DIEXFQ68CQ4 756 aaKnown RBP18.07■□□□□ 0.48
CPSF3-202ENST00000460593 CENPBP07199 599 aaPredicted RBP18.01■□□□□ 0.47
CPSF3-202ENST00000460593 YTHDC1Q96MU7 727 aaKnown RBP18■□□□□ 0.47
CPSF3-202ENST00000460593 MYT1Q01538 1121 aa17.91■□□□□ 0.46
CPSF3-202ENST00000460593 RSF1Q96T23 1441 aaPredicted RBP17.91■□□□□ 0.46
CPSF3-202ENST00000460593 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
CPSF3-202ENST00000460593 ABCC9O60706 1549 aa17.84■□□□□ 0.45
CPSF3-202ENST00000460593 SCRIBQ14160 1630 aa17.7■□□□□ 0.42
CPSF3-202ENST00000460593 MIER1Q8N108 512 aa17.69■□□□□ 0.42
CPSF3-202ENST00000460593 ZNF316A6NFI3 1004 aaPredicted RBP17.68■□□□□ 0.42
CPSF3-202ENST00000460593 CECR2Q9BXF3 1484 aa17.52■□□□□ 0.4
CPSF3-202ENST00000460593 HNRNPUL2Q1KMD3 747 aaKnown RBP17.5■□□□□ 0.39
CPSF3-202ENST00000460593 MROH2BQ7Z745 1585 aa17.42■□□□□ 0.38
CPSF3-202ENST00000460593 CEP162Q5TB80 1403 aa17.42■□□□□ 0.38
CPSF3-202ENST00000460593 UBTFP17480 764 aaKnown RBP17.38■□□□□ 0.37
CPSF3-202ENST00000460593 WIZO95785 1651 aa17.36■□□□□ 0.37
CPSF3-202ENST00000460593 CCDC88BA6NC98 1476 aa17.34■□□□□ 0.37
CPSF3-202ENST00000460593 ABCC8Q09428 1581 aa17.34■□□□□ 0.37
CPSF3-202ENST00000460593 SUPT16HQ9Y5B9 1047 aaKnown RBP17.34■□□□□ 0.37
CPSF3-202ENST00000460593 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.36
CPSF3-202ENST00000460593 SOGA1O94964 1423 aa17.32■□□□□ 0.36
CPSF3-202ENST00000460593 TSHZ2Q9NRE2 1034 aa17.26■□□□□ 0.35
CPSF3-202ENST00000460593 RANGAP1P46060 587 aaPredicted RBP17.25■□□□□ 0.35
CPSF3-202ENST00000460593 RUSC2Q8N2Y8 1516 aa17.25■□□□□ 0.35
CPSF3-202ENST00000460593 TNIKQ9UKE5 1360 aa17.21■□□□□ 0.35
CPSF3-202ENST00000460593 BCANQ96GW7 911 aa17.2■□□□□ 0.34
CPSF3-202ENST00000460593 CSRNP3Q8WYN3 585 aa17.19■□□□□ 0.34
CPSF3-202ENST00000460593 ANP32EQ9BTT0 268 aa17.18■□□□□ 0.34
CPSF3-202ENST00000460593 BCL11AQ9H165 835 aa17.18■□□□□ 0.34
CPSF3-202ENST00000460593 EIF4G1Q04637 1599 aaKnown RBP17.16■□□□□ 0.34
CPSF3-202ENST00000460593 KCNH8Q96L42 1107 aa17.13■□□□□ 0.33
CPSF3-202ENST00000460593 BAZ1AQ9NRL2 1556 aaPredicted RBP17.06■□□□□ 0.32
CPSF3-202ENST00000460593 APLP2Q06481 763 aa17.01■□□□□ 0.31
CPSF3-202ENST00000460593 GOLGA3Q08378 1498 aa17■□□□□ 0.31
CPSF3-202ENST00000460593 FKBP8Q14318 412 aa16.96■□□□□ 0.31
CPSF3-202ENST00000460593 CLIP1P30622 1438 aa16.96■□□□□ 0.3
CPSF3-202ENST00000460593 NACADO15069 1562 aa16.95■□□□□ 0.3
CPSF3-202ENST00000460593 CLSPNQ9HAW4 1339 aa16.94■□□□□ 0.3
CPSF3-202ENST00000460593 DHX57Q6P158 1386 aaKnown RBP16.94■□□□□ 0.3
CPSF3-202ENST00000460593 ITGAEP38570 1179 aa16.92■□□□□ 0.3
CPSF3-202ENST00000460593 SMARCA2P51531 1590 aa16.89■□□□□ 0.29
CPSF3-202ENST00000460593 EEA1Q15075 1411 aa16.88■□□□□ 0.29
CPSF3-202ENST00000460593 TOP2AP11388 1531 aaKnown RBP16.87■□□□□ 0.29
CPSF3-202ENST00000460593 VPS8Q8N3P4 1428 aa16.87■□□□□ 0.29
CPSF3-202ENST00000460593 RBM19Q9Y4C8 960 aaKnown RBP16.85■□□□□ 0.29
CPSF3-202ENST00000460593 KANK4Q5T7N3 995 aaPredicted RBP16.83■□□□□ 0.28
CPSF3-202ENST00000460593 DDX10Q13206 875 aaKnown RBP16.8■□□□□ 0.28
CPSF3-202ENST00000460593 CEP164Q9UPV0 1460 aa16.8■□□□□ 0.28
CPSF3-202ENST00000460593 TRIM52Q96A61 297 aa16.79■□□□□ 0.28
CPSF3-202ENST00000460593 HIRIP3Q9BW71 556 aaPredicted RBP16.79■□□□□ 0.28
CPSF3-202ENST00000460593 RAPGEF2Q9Y4G8 1499 aa16.79■□□□□ 0.28
CPSF3-202ENST00000460593 MSH5O43196 834 aa16.75■□□□□ 0.27
CPSF3-202ENST00000460593 KIF21BO75037 1637 aa16.73■□□□□ 0.27
CPSF3-202ENST00000460593 SMARCA4P51532 1647 aa16.72■□□□□ 0.27
CPSF3-202ENST00000460593 SYNJ1O43426 1573 aa16.7■□□□□ 0.26
CPSF3-202ENST00000460593 NEFLP07196 543 aa16.69■□□□□ 0.26
CPSF3-202ENST00000460593 IRX6P78412 446 aaPredicted RBP16.67■□□□□ 0.26
CPSF3-202ENST00000460593 SIN3AQ96ST3 1273 aa16.66■□□□□ 0.26
CPSF3-202ENST00000460593 PABPN1Q86U42 306 aaKnown RBP eCLIP16.62■□□□□ 0.25
CPSF3-202ENST00000460593 ARAP1Q96P48 1450 aa16.56■□□□□ 0.24
CPSF3-202ENST00000460593 RAB3GAP2Q9H2M9 1393 aa16.56■□□□□ 0.24
CPSF3-202ENST00000460593 BAZ1BQ9UIG0 1483 aaKnown RBP16.55■□□□□ 0.24
CPSF3-202ENST00000460593 CCNB3Q8WWL7 1395 aa16.54■□□□□ 0.24
CPSF3-202ENST00000460593 PPP1R15AO75807 674 aaPredicted RBP16.54■□□□□ 0.24
CPSF3-202ENST00000460593 ERICH6Q7L0X2 663 aa16.53■□□□□ 0.24
CPSF3-202ENST00000460593 WDR97A6NE52 1622 aa16.53■□□□□ 0.24
CPSF3-202ENST00000460593 MAPKBP1O60336 1514 aa16.51■□□□□ 0.23
CPSF3-202ENST00000460593 RRBP1Q9P2E9 1410 aaKnown RBP16.51■□□□□ 0.23
CPSF3-202ENST00000460593 ANP32CO43423 234 aa16.5■□□□□ 0.23
CPSF3-202ENST00000460593 FAM50AQ14320 339 aaKnown RBP16.46■□□□□ 0.22
CPSF3-202ENST00000460593 HNRNPUQ00839 825 aaKnown RBP eCLIP16.44■□□□□ 0.22
CPSF3-202ENST00000460593 CDK11AQ9UQ88 783 aaPredicted RBP16.43■□□□□ 0.22
CPSF3-202ENST00000460593 CUX2O14529 1486 aa16.41■□□□□ 0.22
CPSF3-202ENST00000460593 CCER2I3L3R5 266 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 202 ms