RNA–Protein interactions for RNA: ENST00000418373.1

PDLIM4-203, Transcript of PDZ and LIM domain 4, humanhuman

TSL 5

Gene PDLIM4, Length 538 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-203ENST00000418373 NISCHQ9Y2I1 1504 aa32.31■■■□□ 2.76
PDLIM4-203ENST00000418373 CCDC180Q9P1Z9 1646 aa29.09■■■□□ 2.25
PDLIM4-203ENST00000418373 ABCC9O60706 1549 aa29.01■■■□□ 2.23
PDLIM4-203ENST00000418373 RB1CC1Q8TDY2 1594 aa27.65■■■□□ 2.02
PDLIM4-203ENST00000418373 NACADO15069 1562 aa27.46■■□□□ 1.99
PDLIM4-203ENST00000418373 DNAJC5BQ9UF47 199 aa27.26■■□□□ 1.95
PDLIM4-203ENST00000418373 UNC13AQ9UPW8 1703 aa27.13■■□□□ 1.93
PDLIM4-203ENST00000418373 MYO15BQ96JP2 1530 aa27.11■■□□□ 1.93
PDLIM4-203ENST00000418373 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
PDLIM4-203ENST00000418373 PABPN1Q86U42 306 aaKnown RBP eCLIP26.94■■□□□ 1.9
PDLIM4-203ENST00000418373 BICRAQ9NZM4 1560 aa26.9■■□□□ 1.9
PDLIM4-203ENST00000418373 ZCCHC6Q5VYS8 1495 aaKnown RBP26.8■■□□□ 1.88
PDLIM4-203ENST00000418373 DCAF1Q9Y4B6 1507 aa26.74■■□□□ 1.87
PDLIM4-203ENST00000418373 SHROOM4Q9ULL8 1493 aa26.53■■□□□ 1.84
PDLIM4-203ENST00000418373 SCRIBQ14160 1630 aa26.43■■□□□ 1.82
PDLIM4-203ENST00000418373 CC2D2AQ9P2K1 1620 aa26.27■■□□□ 1.8
PDLIM4-203ENST00000418373 EIF4G1Q04637 1599 aaKnown RBP26.2■■□□□ 1.79
PDLIM4-203ENST00000418373 CECR2Q9BXF3 1484 aa26.16■■□□□ 1.78
PDLIM4-203ENST00000418373 NCAPD3P42695 1498 aa25.34■■□□□ 1.65
PDLIM4-203ENST00000418373 ATAD2BQ9ULI0 1458 aa25.25■■□□□ 1.63
PDLIM4-203ENST00000418373 SMARCA4P51532 1647 aa25.24■■□□□ 1.63
PDLIM4-203ENST00000418373 HMGXB3Q12766 1538 aa25.18■■□□□ 1.62
PDLIM4-203ENST00000418373 SMARCA2P51531 1590 aa25.18■■□□□ 1.62
PDLIM4-203ENST00000418373 BAZ1AQ9NRL2 1556 aaPredicted RBP25.09■■□□□ 1.61
PDLIM4-203ENST00000418373 CUX2O14529 1486 aa25.07■■□□□ 1.6
PDLIM4-203ENST00000418373 DNAJC5Q9H3Z4 198 aa25.05■■□□□ 1.6
PDLIM4-203ENST00000418373 PEG3Q9GZU2 1588 aa25.04■■□□□ 1.6
PDLIM4-203ENST00000418373 ERCC6Q03468 1493 aa25.02■■□□□ 1.6
PDLIM4-203ENST00000418373 BAZ1BQ9UIG0 1483 aaKnown RBP24.97■■□□□ 1.59
PDLIM4-203ENST00000418373 NESP48681 1621 aa24.94■■□□□ 1.58
PDLIM4-203ENST00000418373 MROH2BQ7Z745 1585 aa24.89■■□□□ 1.58
PDLIM4-203ENST00000418373 LAMC3Q9Y6N6 1575 aa24.79■■□□□ 1.56
PDLIM4-203ENST00000418373 THOC2Q8NI27 1593 aaKnown RBP24.77■■□□□ 1.56
PDLIM4-203ENST00000418373 KIF21AQ7Z4S6 1674 aa24.68■■□□□ 1.54
PDLIM4-203ENST00000418373 WIZO95785 1651 aa24.61■■□□□ 1.53
PDLIM4-203ENST00000418373 PDS5BQ9NTI5 1447 aa24.58■■□□□ 1.53
PDLIM4-203ENST00000418373 CADPSQ9ULU8 1353 aa24.53■■□□□ 1.52
PDLIM4-203ENST00000418373 MRC2Q9UBG0 1479 aa24.41■■□□□ 1.5
PDLIM4-203ENST00000418373 WDR62O43379 1518 aa24.4■■□□□ 1.5
PDLIM4-203ENST00000418373 RSF1Q96T23 1441 aaPredicted RBP24.35■■□□□ 1.49
PDLIM4-203ENST00000418373 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
PDLIM4-203ENST00000418373 CEP164Q9UPV0 1460 aa24.29■■□□□ 1.48
PDLIM4-203ENST00000418373 CFTRP13569 1480 aa24.28■■□□□ 1.48
PDLIM4-203ENST00000418373 FANCD2Q9BXW9 1451 aa24.26■■□□□ 1.47
PDLIM4-203ENST00000418373 PRDM2Q13029 1718 aa24.13■■□□□ 1.45
PDLIM4-203ENST00000418373 URB2Q14146 1524 aaKnown RBP24.1■■□□□ 1.45
PDLIM4-203ENST00000418373 CCDC88BA6NC98 1476 aa23.99■■□□□ 1.43
PDLIM4-203ENST00000418373 TRIM41Q8WV44 630 aa23.85■■□□□ 1.41
PDLIM4-203ENST00000418373 OSCARQ8IYS5 282 aa23.82■■□□□ 1.4
PDLIM4-203ENST00000418373 TOPBP1Q92547 1522 aa23.82■■□□□ 1.4
PDLIM4-203ENST00000418373 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
PDLIM4-203ENST00000418373 ZNF608Q9ULD9 1512 aaPredicted RBP23.79■■□□□ 1.4
PDLIM4-203ENST00000418373 ABCC8Q09428 1581 aa23.74■■□□□ 1.39
PDLIM4-203ENST00000418373 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
PDLIM4-203ENST00000418373 EIF4G3O43432 1585 aaKnown RBP23.69■■□□□ 1.38
PDLIM4-203ENST00000418373 TARBP1Q13395 1621 aaKnown RBP23.66■■□□□ 1.38
PDLIM4-203ENST00000418373 RIMBP3CA6NJZ7 1639 aa23.62■■□□□ 1.37
PDLIM4-203ENST00000418373 RIMBP3BA6NNM3 1639 aa23.62■■□□□ 1.37
PDLIM4-203ENST00000418373 RIMBP3Q9UFD9 1639 aa23.62■■□□□ 1.37
PDLIM4-203ENST00000418373 POLA1P09884 1462 aaPredicted RBP23.57■■□□□ 1.36
PDLIM4-203ENST00000418373 CHD1O14646 1710 aa23.54■■□□□ 1.36
PDLIM4-203ENST00000418373 AQRO60306 1485 aaKnown RBP eCLIP23.53■■□□□ 1.36
PDLIM4-203ENST00000418373 ARHGEF11O15085 1522 aa23.53■■□□□ 1.36
PDLIM4-203ENST00000418373 RAD54L2Q9Y4B4 1467 aa23.45■■□□□ 1.34
PDLIM4-203ENST00000418373 WDR97A6NE52 1622 aa23.41■■□□□ 1.34
PDLIM4-203ENST00000418373 FGD5Q6ZNL6 1462 aa23.41■■□□□ 1.34
PDLIM4-203ENST00000418373 SOGA1O94964 1423 aa23.41■■□□□ 1.34
PDLIM4-203ENST00000418373 CUX1P39880 1505 aa23.4■■□□□ 1.34
PDLIM4-203ENST00000418373 TDRD9Q8NDG6 1382 aaKnown RBP23.36■■□□□ 1.33
PDLIM4-203ENST00000418373 SNAPC4Q5SXM2 1469 aa23.3■■□□□ 1.32
PDLIM4-203ENST00000418373 ARAP1Q96P48 1450 aa23.3■■□□□ 1.32
PDLIM4-203ENST00000418373 FBLN2P98095 1184 aa23.28■■□□□ 1.32
PDLIM4-203ENST00000418373 MAGI1Q96QZ7 1491 aaPredicted RBP23.27■■□□□ 1.32
PDLIM4-203ENST00000418373 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.32
PDLIM4-203ENST00000418373 CYB5RLQ6IPT4 315 aa23.25■■□□□ 1.31
PDLIM4-203ENST00000418373 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
PDLIM4-203ENST00000418373 PBRM1Q86U86 1689 aa23.22■■□□□ 1.31
PDLIM4-203ENST00000418373 SYNJ1O43426 1573 aa23.2■■□□□ 1.3
PDLIM4-203ENST00000418373 SYNJ2O15056 1496 aa23.18■■□□□ 1.3
PDLIM4-203ENST00000418373 ABCA5Q8WWZ7 1642 aa23.17■■□□□ 1.3
PDLIM4-203ENST00000418373 ABCA10Q8WWZ4 1543 aa23.16■■□□□ 1.3
PDLIM4-203ENST00000418373 GAPVD1Q14C86 1478 aa23.15■■□□□ 1.3
PDLIM4-203ENST00000418373 CHMP7Q8WUX9 453 aaPredicted RBP23.14■■□□□ 1.29
PDLIM4-203ENST00000418373 SUPT5HO00267 1087 aaKnown RBP23.09■■□□□ 1.29
PDLIM4-203ENST00000418373 BIVM-ERCC5R4GMW8 1640 aa23.05■■□□□ 1.28
PDLIM4-203ENST00000418373 TOP2BQ02880 1626 aa23.03■■□□□ 1.28
PDLIM4-203ENST00000418373 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
PDLIM4-203ENST00000418373 ADAMTS12P58397 1594 aa22.98■■□□□ 1.27
PDLIM4-203ENST00000418373 GRIN2AQ12879 1464 aa22.97■■□□□ 1.27
PDLIM4-203ENST00000418373 TRHP20396 242 aaPredicted RBP22.96■■□□□ 1.27
PDLIM4-203ENST00000418373 CEP170Q5SW79 1584 aa22.91■■□□□ 1.26
PDLIM4-203ENST00000418373 NUP160Q12769 1436 aa22.91■■□□□ 1.26
PDLIM4-203ENST00000418373 ERCC6L2Q5T890 1561 aa22.88■■□□□ 1.25
PDLIM4-203ENST00000418373 ERICH3Q5RHP9 1530 aa22.87■■□□□ 1.25
PDLIM4-203ENST00000418373 SHROOM2Q13796 1616 aa22.86■■□□□ 1.25
PDLIM4-203ENST00000418373 FHAD1B1AJZ9 1412 aa22.85■■□□□ 1.25
PDLIM4-203ENST00000418373 RUSC2Q8N2Y8 1516 aa22.67■■□□□ 1.22
PDLIM4-203ENST00000418373 PRG4Q92954 1404 aaPredicted RBP22.63■■□□□ 1.21
PDLIM4-203ENST00000418373 KIF13AQ9H1H9 1805 aa22.59■■□□□ 1.21
PDLIM4-203ENST00000418373 JPH4Q96JJ6 628 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms