RNA–Protein interactions for RNA: ENST00000447684.5

CNOT3-204, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2 BASIC

Gene CNOT3, Length 2,765 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-204ENST00000447684 NISCHQ9Y2I1 1504 aa30.7■■■□□ 2.51
CNOT3-204ENST00000447684 HRCP23327 699 aa27.09■■□□□ 1.93
CNOT3-204ENST00000447684 SHROOM4Q9ULL8 1493 aa26.87■■□□□ 1.89
CNOT3-204ENST00000447684 SUPT5HO00267 1087 aaKnown RBP26.83■■□□□ 1.89
CNOT3-204ENST00000447684 PPARGC1BQ86YN6 1023 aaKnown RBP26.7■■□□□ 1.87
CNOT3-204ENST00000447684 PCGF6Q9BYE7 350 aa26.69■■□□□ 1.86
CNOT3-204ENST00000447684 MYO15BQ96JP2 1530 aa26.33■■□□□ 1.81
CNOT3-204ENST00000447684 CHIC1Q5VXU3 224 aa26.21■■□□□ 1.79
CNOT3-204ENST00000447684 PELP1Q8IZL8 1130 aaKnown RBP26.16■■□□□ 1.78
CNOT3-204ENST00000447684 ZCCHC6Q5VYS8 1495 aaKnown RBP26.13■■□□□ 1.77
CNOT3-204ENST00000447684 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
CNOT3-204ENST00000447684 LOC105371045A0A1W2PR82 267 aa25.76■■□□□ 1.71
CNOT3-204ENST00000447684 DCAF1Q9Y4B6 1507 aa25.75■■□□□ 1.71
CNOT3-204ENST00000447684 SCAF1Q9H7N4 1312 aaKnown RBP25.72■■□□□ 1.71
CNOT3-204ENST00000447684 TRIM26Q12899 539 aaPredicted RBP25.66■■□□□ 1.7
CNOT3-204ENST00000447684 ZEB1P37275 1124 aaPredicted RBP25.43■■□□□ 1.66
CNOT3-204ENST00000447684 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
CNOT3-204ENST00000447684 MYT1Q01538 1121 aa25.11■■□□□ 1.61
CNOT3-204ENST00000447684 ACIN1Q9UKV3 1341 aaKnown RBP25.05■■□□□ 1.6
CNOT3-204ENST00000447684 NEUROD1Q13562 356 aa25.03■■□□□ 1.6
CNOT3-204ENST00000447684 GTF3C3Q9Y5Q9 886 aa24.94■■□□□ 1.58
CNOT3-204ENST00000447684 EHMT2Q96KQ7 1210 aa24.93■■□□□ 1.58
CNOT3-204ENST00000447684 FAM9AQ8IZU1 332 aaPredicted RBP24.88■■□□□ 1.57
CNOT3-204ENST00000447684 ABCC9O60706 1549 aa24.82■■□□□ 1.56
CNOT3-204ENST00000447684 CENPBP07199 599 aaPredicted RBP24.79■■□□□ 1.56
CNOT3-204ENST00000447684 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.72■■□□□ 1.55
CNOT3-204ENST00000447684 TRIM41Q8WV44 630 aa24.71■■□□□ 1.55
CNOT3-204ENST00000447684 CCER1Q8TC90 406 aaPredicted RBP24.68■■□□□ 1.54
CNOT3-204ENST00000447684 DIEXFQ68CQ4 756 aaKnown RBP24.66■■□□□ 1.54
CNOT3-204ENST00000447684 RSF1Q96T23 1441 aaPredicted RBP24.56■■□□□ 1.52
CNOT3-204ENST00000447684 YTHDC1Q96MU7 727 aaKnown RBP24.46■■□□□ 1.51
CNOT3-204ENST00000447684 RB1CC1Q8TDY2 1594 aa24.46■■□□□ 1.51
CNOT3-204ENST00000447684 TTBK1Q5TCY1 1321 aaPredicted RBP24.33■■□□□ 1.49
CNOT3-204ENST00000447684 SCRIBQ14160 1630 aa24.3■■□□□ 1.48
CNOT3-204ENST00000447684 ZNF316A6NFI3 1004 aaPredicted RBP24.11■■□□□ 1.45
CNOT3-204ENST00000447684 MIER1Q8N108 512 aa24.02■■□□□ 1.44
CNOT3-204ENST00000447684 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
CNOT3-204ENST00000447684 CECR2Q9BXF3 1484 aa23.91■■□□□ 1.42
CNOT3-204ENST00000447684 WRNQ14191 1432 aaPredicted RBP eCLIP23.87■■□□□ 1.41
CNOT3-204ENST00000447684 EIF4G1Q04637 1599 aaKnown RBP23.86■■□□□ 1.41
CNOT3-204ENST00000447684 WIZO95785 1651 aa23.84■■□□□ 1.41
CNOT3-204ENST00000447684 BAZ1AQ9NRL2 1556 aaPredicted RBP23.77■■□□□ 1.4
CNOT3-204ENST00000447684 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
CNOT3-204ENST00000447684 NACADO15069 1562 aa23.66■■□□□ 1.38
CNOT3-204ENST00000447684 BCL11AQ9H165 835 aa23.66■■□□□ 1.38
CNOT3-204ENST00000447684 HNRNPUL2Q1KMD3 747 aaKnown RBP23.66■■□□□ 1.38
CNOT3-204ENST00000447684 SUPT16HQ9Y5B9 1047 aaKnown RBP23.65■■□□□ 1.38
CNOT3-204ENST00000447684 ANP32EQ9BTT0 268 aa23.63■■□□□ 1.37
CNOT3-204ENST00000447684 TNIKQ9UKE5 1360 aa23.59■■□□□ 1.37
CNOT3-204ENST00000447684 CCDC88BA6NC98 1476 aa23.58■■□□□ 1.36
CNOT3-204ENST00000447684 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
CNOT3-204ENST00000447684 TSHZ2Q9NRE2 1034 aa23.56■■□□□ 1.36
CNOT3-204ENST00000447684 UBTFP17480 764 aaKnown RBP23.51■■□□□ 1.35
CNOT3-204ENST00000447684 TOP2AP11388 1531 aaKnown RBP23.46■■□□□ 1.35
CNOT3-204ENST00000447684 SOGA1O94964 1423 aa23.46■■□□□ 1.35
CNOT3-204ENST00000447684 EEA1Q15075 1411 aa23.46■■□□□ 1.35
CNOT3-204ENST00000447684 CSRNP3Q8WYN3 585 aa23.44■■□□□ 1.34
CNOT3-204ENST00000447684 CLSPNQ9HAW4 1339 aa23.43■■□□□ 1.34
CNOT3-204ENST00000447684 SMARCA2P51531 1590 aa23.37■■□□□ 1.33
CNOT3-204ENST00000447684 BCANQ96GW7 911 aa23.36■■□□□ 1.33
CNOT3-204ENST00000447684 GOLGA3Q08378 1498 aa23.35■■□□□ 1.33
CNOT3-204ENST00000447684 RUSC2Q8N2Y8 1516 aa23.31■■□□□ 1.32
CNOT3-204ENST00000447684 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
CNOT3-204ENST00000447684 APLP2Q06481 763 aa23.16■■□□□ 1.3
CNOT3-204ENST00000447684 KIF21BO75037 1637 aa23.14■■□□□ 1.29
CNOT3-204ENST00000447684 RANGAP1P46060 587 aaPredicted RBP23.14■■□□□ 1.29
CNOT3-204ENST00000447684 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
CNOT3-204ENST00000447684 FKBP8Q14318 412 aa23.12■■□□□ 1.29
CNOT3-204ENST00000447684 KCNH8Q96L42 1107 aa23.11■■□□□ 1.29
CNOT3-204ENST00000447684 VPS8Q8N3P4 1428 aa23.1■■□□□ 1.29
CNOT3-204ENST00000447684 CLIP1P30622 1438 aa23.1■■□□□ 1.29
CNOT3-204ENST00000447684 RBM19Q9Y4C8 960 aaKnown RBP23.03■■□□□ 1.28
CNOT3-204ENST00000447684 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
CNOT3-204ENST00000447684 ITGAEP38570 1179 aa22.97■■□□□ 1.27
CNOT3-204ENST00000447684 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
CNOT3-204ENST00000447684 NEFLP07196 543 aa22.95■■□□□ 1.26
CNOT3-204ENST00000447684 DHX57Q6P158 1386 aaKnown RBP22.94■■□□□ 1.26
CNOT3-204ENST00000447684 UNC13AQ9UPW8 1703 aa22.88■■□□□ 1.25
CNOT3-204ENST00000447684 RAPGEF2Q9Y4G8 1499 aa22.86■■□□□ 1.25
CNOT3-204ENST00000447684 ERICH6Q7L0X2 663 aa22.8■■□□□ 1.24
CNOT3-204ENST00000447684 MSH5O43196 834 aa22.79■■□□□ 1.24
CNOT3-204ENST00000447684 DDX10Q13206 875 aaKnown RBP22.78■■□□□ 1.24
CNOT3-204ENST00000447684 TRIM52Q96A61 297 aa22.78■■□□□ 1.24
CNOT3-204ENST00000447684 PEG3Q9GZU2 1588 aa22.77■■□□□ 1.24
CNOT3-204ENST00000447684 CUX2O14529 1486 aa22.69■■□□□ 1.22
CNOT3-204ENST00000447684 RRBP1Q9P2E9 1410 aaKnown RBP22.68■■□□□ 1.22
CNOT3-204ENST00000447684 ARAP1Q96P48 1450 aa22.66■■□□□ 1.22
CNOT3-204ENST00000447684 ERICH3Q5RHP9 1530 aa22.64■■□□□ 1.21
CNOT3-204ENST00000447684 KANK4Q5T7N3 995 aaPredicted RBP22.63■■□□□ 1.21
CNOT3-204ENST00000447684 PRKCSHP14314 528 aaPredicted RBP22.62■■□□□ 1.21
CNOT3-204ENST00000447684 HIRIP3Q9BW71 556 aaPredicted RBP22.61■■□□□ 1.21
CNOT3-204ENST00000447684 TOP2BQ02880 1626 aa22.6■■□□□ 1.21
CNOT3-204ENST00000447684 IRX6P78412 446 aaPredicted RBP22.58■■□□□ 1.21
CNOT3-204ENST00000447684 CDK11AQ9UQ88 783 aaPredicted RBP22.56■■□□□ 1.2
CNOT3-204ENST00000447684 PRXQ9BXM0 1461 aa22.55■■□□□ 1.2
CNOT3-204ENST00000447684 ANP32CO43423 234 aa22.52■■□□□ 1.2
CNOT3-204ENST00000447684 BIVM-ERCC5R4GMW8 1640 aa22.52■■□□□ 1.2
CNOT3-204ENST00000447684 CCNB3Q8WWL7 1395 aa22.52■■□□□ 1.2
CNOT3-204ENST00000447684 BICRAQ9NZM4 1560 aa22.51■■□□□ 1.19
CNOT3-204ENST00000447684 FANCIQ9NVI1 1328 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms